Works by Kyrpides, Nikos C.

Results: 132

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains.

Published in:

PLoS Biology, 2014, v. 12, n. 8, p. 1, doi. 10.1371/journal.pbio.1001920

By:

Kyrpides, Nikos C.;
Hugenholtz, Philip;
Eisen, Jonathan A.;
Woyke, Tanja;
Göker, Markus;
Parker, Charles T.;
Amann, Rudolf;
Beck, Brian J.;
Chain, Patrick S. G.;
Chun, Jongsik;
Colwell, Rita R.;
Danchin, Antoine;
Dawyndt, Peter;
Dedeurwaerdere, Tom;
DeLong, Edward F.;
Detter, John C.;
De Vos, Paul;
Donohue, Timothy J.;
Dong, Xiu-Zhu;
Ehrlich, Dusko S.

Publication type:

Article

Genomes OnLine Database (GOLD 1.0):a monitor of complete and ongoing genome projects world‐wide.

Published in:

Bioinformatics, 1999, v. 15, n. 9, p. 773, doi. 10.1093/bioinformatics/15.9.773

By:

Kyrpides, Nikos C.

Publication type:

Article

Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.

Published in:

Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7

By:

Martínez-Hidalgo, Pilar;
Humm, Ethan A.;
Still, David W.;
Shi, Baochen;
Pellegrini, Matteo;
de la Roca, Gabriela;
Veliz, Esteban;
Maymon, Maskit;
Bru, Pierrick;
Huntemann, Marcel;
Clum, Alicia;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mukherjee, Supratim;
Reddy, T. B. K.;
Daum, Chris;
Ivanova, Natalia N.;
Kyrpides, Nikos C.;
Shapiro, Nicole;
Eloe-Fadrosh, Emiley A.

Publication type:

Article

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6

By:

Jian-Yu Jiao;
Carro, Lorena;
Lan Liu;
Xiao-Yang Gao;
Xiao-Tong Zhang;
Hozzein, Wael N.;
Lapidus, Alla;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha;
Hadjithomas, Michalis;
Ivanova, Natalia N.;
Göker, Markus;
Pillay, Manoj;
Eisen, Jonathan A.;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0220-z

By:

Aserse, Aregu Amsalu;
Woyke, Tanja;
Kyrpides, Nikos C.;
Whitman, William B.;
Lindström, Kristina

Publication type:

Article

High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0216-0

By:

Nouioui, Imen;
Göker, Markus;
Carro, Lorena;
Montero-Calasanz, Maria del Carmen;
Rohde, Manfred;
Woyke, Tanja;
Kyrpides, Nikos C.;
Klenk, Hans-Peter

Publication type:

Article

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.

Published in:

Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0203-5

By:

Tsesmetzis, Nicolas;
Yilmaz, Pelin;
Marks, Peter C.;
Kyrpides, Nikos C.;
Head, Ian M.;
Lomans, Bart P.

Publication type:

Article

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0184-4

By:

Melton, Emily Denise;
Sorokin, Dimitry Y.;
Overmars, Lex;
Chertkov, Olga;
Clum, Alicia;
Pillay, Manoj;
Ivanova, Natalia;
Shapiro, Nicole;
Kyrpides, Nikos C.;
Woyke, Tanja;
Lapidus, Alla L.;
Muyzer, Gerard

Publication type:

Article

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9

By:

Panschin, Irina;
Sixing Huang;
Meier-Kolthoff, Jan P.;
Tindall, Brian J.;
Rohde, Manfred;
Verbarg, Susanne;
Lapidus, Alla;
Han, James;
Trong, Stephan;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T).

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x

By:

Kappler, Ulrike;
Davenport, Karen;
Beatson, Scott;
Lapidus, Alla;
Pan, Chongle;
Han, Cliff;
del Carmen Montero-Calasanz, Maria;
Land, Miriam;
Hauser, Loren;
Rohde, Manfred;
Göker, Markus;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7

By:

Ntougias, Spyridon;
Lapidus, Alla;
Copeland, Alex;
Reddy, T. B. K.;
Pati, Amrita;
Ivanova, Natalia N.;
Markowitz, Victor M.;
Klenk, Hans-Peter;
Woyke, Tanja;
Fasseas, Constantinos;
Kyrpides, Nikos C.;
Zervakis, Georgios I.

Publication type:

Article

Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009PT), a representative of the Roseobacter group.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0050-9

By:

Lau, Stanley C. K.;
Riedel, Thomas;
Fiebig, Anne;
Han, James;
Huntemann, Marcel;
Petersen, Jörn;
Ivanova, Natalia N.;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Kyrpides, Nikos C.;
Klenk, Hans-Peter;
Pei-Yuan Qian

Publication type:

Article

High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0036-7

By:

Yassin, Atteyet F.;
Lapidus, Alla;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Large-scale contamination of microbial isolate genomes by Illumina PhiX control.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-18

By:

Mukherjee, Supratim;
Huntemann, Marcel;
Ivanova, Natalia;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4

By:

Laviad, Sivan;
Lapidus, Alla;
Han, James;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Lang, Elke;
Rohde, Manfred;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Halpern, Malka

Publication type:

Article

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-13

By:

De Meyer, Sofie E.;
Fabiano, Elena;
Tian, Rui;
Van Berkum, Peter;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia N.;
Pati, Amrita;
Woyke, Tanja;
Howieson, John;
Kyrpides, Nikos C.;
Reeve, Wayne

Publication type:

Article

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8

By:

Mukherjee, Supratim;
Lapidus, Alla;
Shapiro, Nicole;
Jan-Fang Cheng;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Ivanova, Natalia;
Mikhailova, Natalia;
Amy Chen;
Palaniappan, Krishna;
Spring, Stefan;
Göker, Markus;
Markowitz, Victor;
Woyke, Tanja;
Tindall, Brian J.;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1

By:

Gao, Xiao-Yang;
Zhi, Xiao-Yang;
Li, Hong-Wei;
Yu Zhou;
Alla Lapidus;
James Han;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Tindall, Brian J.;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659

By:

Spring, Stefan;
Visser, Michael;
Lu, Megan;
Copeland, Alex;
Lapidus, Alla;
Lucas, Susan;
Jan-Fang Cheng;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne A.;
Pitluck, Sam;
Ivanova, Natalia;
Land, Miriam;
Hauser, Loren;
Larimer, Frank;
Rohde, Manfred;
Göker, Markus;
Detter, John C.;
Kyrpides, Nikos C.;
Woyke, Tanja

Publication type:

Article

Complete genome sequence of Marinomonas posidonica type strain (IVIA-Po-181T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 31, doi. 10.4056/sigs.2976373

By:

Lucas-Elío, Patricia;
Goodwin, Lynne;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Kyrpides, Nikos C.;
Detter, Janine C.;
Copeland, Alex;
Megan Lu;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Shunsheng Han;
Land, Miriam L.;
Ivanova, Natalia;
Mikhailova, Natalia;
Johnston, Andrew W. B.;
Sanchez-Amat, Antonio

Publication type:

Article

Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 22, doi. 10.4056/sigs.2966299

By:

Neupane, Saraswoti;
Finlay, Roger D.;
Kyrpides, Nikos C.;
Goodwin, Lynne;
Alström, Sadhna;
Lucas, Susan;
Land, Miriam;
Han, James;
Lapidus, Alla;
Jan-Fang Cheng;
Bruce, David;
Pitluck, Sam;
Peters, Lin;
Ovchinnikova, Galina;
Held, Brittany;
Cliff Han;
Detter, John C.;
Tapia, Roxanne;
Hauser, Loren;
Ivanova, Natalia

Publication type:

Article

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projectsand their associated metadata.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D346, doi. 10.1093/nar/gkp848

By:

Liolios, Konstantinos;
Chen, I-Min A.;
Mavromatis, Konstantinos;
Tavernarakis, Nektarios;
Hugenholtz, Philip;
Markowitz, Victor M.;
Kyrpides, Nikos C.

Publication type:

Article

The integrated microbial genomes system: an expanding comparative analysis resource.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D382, doi. 10.1093/nar/gkp887

By:

Markowitz, Victor M.;
Chen, I-Min A.;
Palaniappan, Krishna;
Ken Chu;
Szeto, Ernest;
Grechkin, Yuri;
Ratner, Anna;
Anderson, Iain;
Lykidis, Athanasios;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 7, p. 2096, doi. 10.1093/nar/gkp075

By:

Hooper, Sean D.;
Anderson, Iain J.;
Pati, Amrita;
Dalevi, Daniel;
Mavromatis, Konstantinos;
Kyrpides, Nikos C.

Publication type:

Article

The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D475

By:

Liolios, Konstantinos;
Mavromatis, Konstantinos;
Tavernarakis, Nektarios;
Kyrpides, Nikos C.

Publication type:

Article

IMG/M: a data management and analysis system for metagenomes.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D534

By:

Markowitz, Victor M.;
Ivanova, Natalia N.;
Szeto, Ernest;
Palaniappan, Krishna;
Chu, Ken;
Dalevi, Daniel;
Chen, I-Min A.;
Grechkin, Yuri;
Dubchak, Inna;
Anderson, Iain;
Lykidis, Athanasios;
Mavromatis, Konstantinos;
Hugenholtz, Philip;
Kyrpides, Nikos C.

Publication type:

Article

The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D528

By:

Markowitz, Victor M.;
Szeto, Ernest;
Palaniappan, Krishna;
Grechkin, Yuri;
Chu, Ken;
Chen, I-Min A.;
Dubchak, Inna;
Anderson, Iain;
Lykidis, Athanasios;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d332, doi. 10.1093/nar/gkj145

By:

Liolios, Konstantinos;
Tavernarakis, Nektarios;
Hugenholtz, Philip;
Kyrpides, Nikos C.

Publication type:

Article

The integrated microbial genomes (IMG) system.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d344, doi. 10.1093/nar/gkj024

By:

Markowitz, Victor M.;
Korzeniewski, Frank;
Palaniappan, Krishna;
Szeto, Ernest;
Werner, Greg;
Padki, Anu;
Zhao, Xueling;
Dubchak, Inna;
Hugenholtz, Philip;
Anderson, Iain;
Lykidis, Athanasios;
Mavromatis, Konstantinos;
Ivanova, Natalia;
Kyrpides, Nikos C.

Publication type:

Article

Analysis of the Thermotoga maritima genome combining a variety of sequence similarity and genome context tools.

Published in:

Nucleic Acids Research, 2000, v. 28, n. 22, p. 4573, doi. 10.1093/nar/28.22.4573

By:

Kyrpides, Nikos C.;
Ouzounis, Christos A.;
Iliopoulos, Ioannis;
Vonstein, Veronika;
Overbeek, Ross

Publication type:

Article

A thermostable Cas9 with increased lifetime in human plasma.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01408-4

By:

Harrington, Lucas B.;
Paez-Espino, David;
Staahl, Brett T.;
Chen, Janice S.;
Ma, Enbo;
Kyrpides, Nikos C.;
Doudna, Jennifer A.

Publication type:

Article

Identifying candidate structured RNAs in CRISPR operons.

Published in:

RNA Biology, 2022, v. 19, n. 1, p. 678, doi. 10.1080/15476286.2022.2067714

By:

Fremin, Brayon J.;
Kyrpides, Nikos C.

Publication type:

Article

Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2629-y

By:

Chen, I-Min A.;
Markowitz, Victor M.;
Palaniappan, Krishna;
Szeto, Ernest;
Chu, Ken;
Jinghua Huang;
Ratner, Anna;
Pillay, Manoj;
Hadjithomas, Michalis;
Huntemann, Marcel;
Mikhailova, Natalia;
Ovchinnikova, Galina;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

Insights into the phylogeny and coding potential of microbial dark matter.

Published in:

Nature, 2013, v. 499, n. 7459, p. 431, doi. 10.1038/nature12352

By:

Rinke, Christian;
Schwientek, Patrick;
Sczyrba, Alexander;
Ivanova, Natalia N.;
Anderson, Iain J.;
Cheng, Jan-Fang;
Darling, Aaron;
Malfatti, Stephanie;
Swan, Brandon K.;
Gies, Esther A.;
Dodsworth, Jeremy A.;
Hedlund, Brian P.;
Tsiamis, George;
Sievert, Stefan M.;
Liu, Wen-Tso;
Eisen, Jonathan A.;
Hallam, Steven J.;
Kyrpides, Nikos C.;
Stepanauskas, Ramunas;
Rubin, Edward M.

Publication type:

Article

Whole-genome sequence annotation: ‘Going wrong with confidence’.

Published in:

Molecular Microbiology, 1999, v. 32, n. 4, p. 886, doi. 10.1046/j.1365-2958.1999.01380.x

By:

Kyrpides, Nikos C;
Ouzounis, Christos A

Publication type:

Article

The Santorini Volcanic Complex as a Valuable Source of Enzymes for Bioenergy.

Published in:

Energies (19961073), 2021, v. 14, n. 5, p. 1414, doi. 10.3390/en14051414

By:

Polymenakou, Paraskevi N.;
Nomikou, Paraskevi;
Zafeiropoulos, Haris;
Mandalakis, Manolis;
Anastasiou, Thekla I.;
Kilias, Stephanos;
Kyrpides, Nikos C.;
Kotoulas, Georgios;
Magoulas, Antoniοs;
Jeon, Byong-Hun

Publication type:

Article

Facile Recoding of Selenocysteine in Nature.

Published in:

Angewandte Chemie International Edition, 2016, v. 55, n. 17, p. 5337, doi. 10.1002/anie.201511657

By:

Mukai, Takahito;
Englert, Markus;
Tripp, H. James;
Miller, Corwin;
Ivanova, Natalia N.;
Rubin, Edward M.;
Kyrpides, Nikos C.;
Söll, Dieter

Publication type:

Article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 8, p. 1645, doi. 10.1038/ismej.2014.18

By:

Williams, Timothy J;
Allen, Michelle A;
DeMaere, Matthew Z;
Kyrpides, Nikos C;
Tringe, Susannah G;
Woyke, Tanja;
Cavicchioli, Ricardo

Publication type:

Article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 8, p. 1752, doi. 10.1038/ismej.2014.65

By:

Williams, Timothy J;
Allen, Michelle A;
DeMaere, Matthew Z;
Kyrpides, Nikos C;
Tringe, Susannah G;
Woyke, Tanja;
Cavicchioli, Ricardo

Publication type:

Article

Individual genome assembly from complex community short-read metagenomic datasets.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 4, p. 898, doi. 10.1038/ismej.2011.147

By:

Luo, Chengwei;
Tsementzi, Despina;
Kyrpides, Nikos C;
Konstantinidis, Konstantinos T

Publication type:

Article

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 1, p. 122, doi. 10.1038/ismej.2010.125

By:

Lykidis, Athanasios;
Chen, Chia-Lung;
Tringe, Susannah G;
McHardy, Alice C;
Copeland, Alex;
Kyrpides, Nikos C;
Hugenholtz, Philip;
Macarie, Hervé;
Olmos, Alejandro;
Monroy, Oscar;
Liu, Wen-Tso

Publication type:

Article

Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00195

By:

Kublanov, Ilya V.;
Sigalova, Olga M.;
Gavrilov, Sergey N.;
Lebedinsky, Alexander V.;
Rinke, Christian;
Kovaleva, Olga;
Chernyh, Nikolai A.;
Ivanova, Natalia;
Daum, Chris;
Reddy, T. B. K.;
Klenk, Hans-Peter;
Spring, Stefan;
Göker, Markus;
Reva, Oleg N.;
Miroshnichenko, Margarita L.;
Kyrpides, Nikos C.;
Woyke, Tanja;
Gelfand, Mikhail S.;
Bonch-Osmolovskaya, Elizaveta A.

Publication type:

Article

Genome-Based Taxonomic Classification of Bacteroidetes.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.02003

By:

Hahnke, Richard L.;
Meier-Kolthoff, Jan P.;
García-López, Marina;
Mukherjee, Supratim;
Huntemann, Marcel;
Ivanova, Natalia N.;
Woyke, Tanja;
Kyrpides, Nikos C.;
Klenk, Hans-Peter;
Göker, Markus

Publication type:

Article

Evolution of a multi-step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhancer-binding protein triggers acid-activated gene expression.

Published in:

Molecular Microbiology, 2017, v. 103, n. 5, p. 829, doi. 10.1111/mmi.13592

By:

Tian, Rui;
Heiden, Stephan;
Osman, Wan A. M.;
Ardley, Julie K.;
James, Euan K.;
Gollagher, Margaret M.;
Tiwari, Ravi;
Seshadri, Rekha;
Kyrpides, Nikos C.;
Reeve, Wayne G.

Publication type:

Article

Leichte Neucodierung von Selenocystein in der Natur.

Published in:

Angewandte Chemie, 2016, v. 128, n. 17, p. 5423, doi. 10.1002/ange.201511657

By:

Mukai, Takahito;
Englert, Markus;
Tripp, H. James;
Miller, Corwin;
Ivanova, Natalia N.;
Rubin, Edward M.;
Kyrpides, Nikos C.;
Söll, Dieter

Publication type:

Article

Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome.

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Microbiome, 2022, v. 10, n. 1, p. N.PAG, doi. 10.1186/s40168-022-01343-7

By:

Keller-Costa, Tina;
Kozma, Lydia;
Silva, Sandra G.;
Toscan, Rodolfo;
Gonçalves, Jorge;
Lago-Lestón, Asunción;
Kyrpides, Nikos C.;
Nunes da Rocha, Ulisses;
Costa, Rodrigo

Publication type:

Article

Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0303-x

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Díaz-Cárdenas, Carolina;
López, Gina;
Alzate-Ocampo, José David;
González, Laura N.;
Shapiro, Nicole;
Woyke, Tanja;
Kyrpides, Nikos C.;
Restrepo, Silvia;
Baena, Sandra

Publication type:

Article

Draft genome sequence of Pseudomonas extremaustralis strain USBA-GBX 515 isolated from Superparamo soil samples in Colombian Andes.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0292-9

By:

López, Gina;
Diaz-Cárdenas, Carolina;
Shapiro, Nicole;
Woyke, Tanja;
Kyrpides, Nikos C.;
Alzate, J. David;
González, Laura N.;
Restrepo, Silvia;
Baena, Sandra

Publication type:

Article

Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0283-x

By:

Aserse, Aregu Amsalu;
Woyke, Tanja;
Kyrpides, Nikos C.;
Whitman, William B.;
Lindström, Kristina

Publication type:

Article

Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0275-x

By:

Dong Han Choi;
Gwang II Jang;
Lapidus, Alla;
Copeland, Alex;
Reddy, T. B. K.;
Mukherjee, Supratim;
Huntemann, Marcel;
Varghese, Neha;
Ivanova, Natalia;
Pillay, Manoj;
Tindall, Brian J.;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Byung Cheol Cho

Publication type:

Article