Works matching AU Kyrpides, Nikos C.

Results: 132

Leichte Neucodierung von Selenocystein in der Natur.

Published in:

Angewandte Chemie, 2016, v. 128, n. 17, p. 5423, doi. 10.1002/ange.201511657

By:

Mukai, Takahito;
Englert, Markus;
Tripp, H. James;
Miller, Corwin;
Ivanova, Natalia N.;
Rubin, Edward M.;
Kyrpides, Nikos C.;
Söll, Dieter

Publication type:

Article

Estimating DNA coverage and abundance in metagenomes using a gamma approximation.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 295, doi. 10.1093/bioinformatics/btp687

By:

Hooper, Sean D.;
Dalevi, Daniel;
Pati, Amrita;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

IMG ER: a system for microbial genome annotation expert review and curation.

Published in:

Bioinformatics, 2009, v. 25, n. 17, p. 2271, doi. 10.1093/bioinformatics/btp393

By:

Markowitz, Victor M.;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Chen, I-Min A.;
Chu, Ken;
Kyrpides, Nikos C.

Publication type:

Article

Annotation of metagenome short reads using proxygenes.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i7, doi. 10.1093/bioinformatics/btn276

By:

Daniel Dalevi;
Natalia N. Ivanova;
Konstantinos Mavromatis;
Sean D. Hooper;
Ernest Szeto;
Philip Hugenholtz;
Nikos C. Kyrpides;
Victor M. Markowitz

Publication type:

Article

Genomes OnLine Database (GOLD 1.0):a monitor of complete and ongoing genome projects world‐wide.

Published in:

Bioinformatics, 1999, v. 15, n. 9, p. 773, doi. 10.1093/bioinformatics/15.9.773

By:

Kyrpides, Nikos C.

Publication type:

Article

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25646-9

By:

Martin, Kara;
Schmidt, Katrin;
Toseland, Andrew;
Boulton, Chris A.;
Barry, Kerrie;
Beszteri, Bánk;
Brussaard, Corina P. D.;
Clum, Alicia;
Daum, Chris G.;
Eloe-Fadrosh, Emiley;
Fong, Allison;
Foster, Brian;
Foster, Bryce;
Ginzburg, Michael;
Huntemann, Marcel;
Ivanova, Natalia N.;
Kyrpides, Nikos C.;
Lindquist, Erika;
Mukherjee, Supratim;
Palaniappan, Krishnaveni

Publication type:

Article

Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation.

Published in:

PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109738

By:

Billis, Konstantinos;
Billini, Maria;
Tripp, H. James;
Kyrpides, Nikos C.;
Mavromatis, Konstantinos

Publication type:

Article

Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0061126

By:

He, Shaomei;
Ivanova, Natalia;
Kirton, Edward;
Allgaier, Martin;
Bergin, Claudia;
Scheffrahn, Rudolf H.;
Kyrpides, Nikos C.;
Warnecke, Falk;
Tringe, Susannah G.;
Hugenholtz, Philip

Publication type:

Article

Improving Microbial Genome Annotations in an Integrated Database Context.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0054859

By:

Chen, I-Min A.;
Markowitz, Victor M.;
Chu, Ken;
Anderson, Iain;
Mavromatis, Konstantinos;
Kyrpides, Nikos C.;
Ivanova, Natalia N.

Publication type:

Article

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0048837

By:

Mavromatis, Konstantinos;
Land, Miriam L.;
Brettin, Thomas S.;
Quest, Daniel J.;
Copeland, Alex;
Clum, Alicia;
Goodwin, Lynne;
Woyke, Tanja;
Lapidus, Alla;
Klenk, Hans Peter;
Cottingham, Robert W.;
Kyrpides, Nikos C.

Publication type:

Article

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project.

Published in:

PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040151

By:

Markowitz, Victor M.;
Chen, I-Min A.;
Chu, Ken;
Szeto, Ernest;
Palaniappan, Krishna;
Jacob, Biju;
Ratner, Anna;
Liolios, Konstantinos;
Pagani, Ioanna;
Huntemann, Marcel;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrade.

Published in:

PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009729

By:

Lykidis, Athanasios;
Pérez-Pantoja, Danilo;
Ledger, Thomas;
Mavromatis, Kostantinos;
Anderson, Iain J.;
Ivanova, Natalia N.;
Hooper, Sean D.;
Lapidus, Alla;
Lucas, Susan;
González, Bernardo;
Kyrpides, Nikos C.

Publication type:

Article

Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii.

Published in:

PLoS ONE, 2009, v. 4, n. 1, p. 1, doi. 10.1371/journal.pone.0004192

By:

Mavromatis, Konstantinos;
Ivanova, Natalia;
Anderson, Iain;
Lykidis, Athanasios;
Hooper, Sean D.;
Hui Sun;
Kunin, Victor;
Lapidus, Alla;
Hugenholtz, Philip;
Patel, Bharat;
Kyrpides, Nikos C.

Publication type:

Article

Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0268-9

By:

Melton, Emily Denise;
Sorokin, Dimitry Y.;
Overmars, Lex;
Lapidus, Alla L.;
Pillay, Manoj;
Ivanova, Natalia;
del Rio, Tijana Glavina;
Kyrpides, Nikos C.;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0216-0

By:

Nouioui, Imen;
Göker, Markus;
Carro, Lorena;
Montero-Calasanz, Maria del Carmen;
Rohde, Manfred;
Woyke, Tanja;
Kyrpides, Nikos C.;
Klenk, Hans-Peter

Publication type:

Article

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6

By:

Laviad-Shitrit, Sivan;
Göker, Markus;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Daum, Chris;
Shapiro, Nicole;
Markowitz, Victor;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Halpern, Malka

Publication type:

Article

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6

By:

Jian-Yu Jiao;
Carro, Lorena;
Lan Liu;
Xiao-Yang Gao;
Xiao-Tong Zhang;
Hozzein, Wael N.;
Lapidus, Alla;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha;
Hadjithomas, Michalis;
Ivanova, Natalia N.;
Göker, Markus;
Pillay, Manoj;
Eisen, Jonathan A.;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0220-z

By:

Aserse, Aregu Amsalu;
Woyke, Tanja;
Kyrpides, Nikos C.;
Whitman, William B.;
Lindström, Kristina

Publication type:

Article

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9

By:

Panschin, Irina;
Sixing Huang;
Meier-Kolthoff, Jan P.;
Tindall, Brian J.;
Rohde, Manfred;
Verbarg, Susanne;
Lapidus, Alla;
Han, James;
Trong, Stephan;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.

Published in:

Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0203-5

By:

Tsesmetzis, Nicolas;
Yilmaz, Pelin;
Marks, Peter C.;
Kyrpides, Nikos C.;
Head, Ian M.;
Lomans, Bart P.

Publication type:

Article

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0184-4

By:

Melton, Emily Denise;
Sorokin, Dimitry Y.;
Overmars, Lex;
Chertkov, Olga;
Clum, Alicia;
Pillay, Manoj;
Ivanova, Natalia;
Shapiro, Nicole;
Kyrpides, Nikos C.;
Woyke, Tanja;
Lapidus, Alla L.;
Muyzer, Gerard

Publication type:

Article

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T).

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x

By:

Kappler, Ulrike;
Davenport, Karen;
Beatson, Scott;
Lapidus, Alla;
Pan, Chongle;
Han, Cliff;
del Carmen Montero-Calasanz, Maria;
Land, Miriam;
Hauser, Loren;
Rohde, Manfred;
Göker, Markus;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7

By:

Ntougias, Spyridon;
Lapidus, Alla;
Copeland, Alex;
Reddy, T. B. K.;
Pati, Amrita;
Ivanova, Natalia N.;
Markowitz, Victor M.;
Klenk, Hans-Peter;
Woyke, Tanja;
Fasseas, Constantinos;
Kyrpides, Nikos C.;
Zervakis, Georgios I.

Publication type:

Article

High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0036-7

By:

Yassin, Atteyet F.;
Lapidus, Alla;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009PT), a representative of the Roseobacter group.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0050-9

By:

Lau, Stanley C. K.;
Riedel, Thomas;
Fiebig, Anne;
Han, James;
Huntemann, Marcel;
Petersen, Jörn;
Ivanova, Natalia N.;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Kyrpides, Nikos C.;
Klenk, Hans-Peter;
Pei-Yuan Qian

Publication type:

Article

High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4

By:

Laviad, Sivan;
Lapidus, Alla;
Han, James;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Lang, Elke;
Rohde, Manfred;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Halpern, Malka

Publication type:

Article

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-13

By:

De Meyer, Sofie E.;
Fabiano, Elena;
Tian, Rui;
Van Berkum, Peter;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia N.;
Pati, Amrita;
Woyke, Tanja;
Howieson, John;
Kyrpides, Nikos C.;
Reeve, Wayne

Publication type:

Article

Large-scale contamination of microbial isolate genomes by Illumina PhiX control.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-18

By:

Mukherjee, Supratim;
Huntemann, Marcel;
Ivanova, Natalia;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8

By:

Mukherjee, Supratim;
Lapidus, Alla;
Shapiro, Nicole;
Jan-Fang Cheng;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Ivanova, Natalia;
Mikhailova, Natalia;
Amy Chen;
Palaniappan, Krishna;
Spring, Stefan;
Göker, Markus;
Markowitz, Victor;
Woyke, Tanja;
Tindall, Brian J.;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

Draft genome sequence of Halomonas lutea strain YIM 91125T (DSM 23508T) isolated from the alkaline Lake Ebinur in Northwest China.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1

By:

Gao, Xiao-Yang;
Zhi, Xiao-Yang;
Li, Hong-Wei;
Yu Zhou;
Alla Lapidus;
James Han;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Tindall, Brian J.;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659

By:

Spring, Stefan;
Visser, Michael;
Lu, Megan;
Copeland, Alex;
Lapidus, Alla;
Lucas, Susan;
Jan-Fang Cheng;
Han, Cliff;
Tapia, Roxanne;
Goodwin, Lynne A.;
Pitluck, Sam;
Ivanova, Natalia;
Land, Miriam;
Hauser, Loren;
Larimer, Frank;
Rohde, Manfred;
Göker, Markus;
Detter, John C.;
Kyrpides, Nikos C.;
Woyke, Tanja

Publication type:

Article

Complete genome sequence of Marinomonas posidonica type strain (IVIA-Po-181T).

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 31, doi. 10.4056/sigs.2976373

By:

Lucas-Elío, Patricia;
Goodwin, Lynne;
Woyke, Tanja;
Pitluck, Sam;
Nolan, Matt;
Kyrpides, Nikos C.;
Detter, Janine C.;
Copeland, Alex;
Megan Lu;
Bruce, David;
Detter, Chris;
Tapia, Roxanne;
Shunsheng Han;
Land, Miriam L.;
Ivanova, Natalia;
Mikhailova, Natalia;
Johnston, Andrew W. B.;
Sanchez-Amat, Antonio

Publication type:

Article

Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.

Published in:

Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 22, doi. 10.4056/sigs.2966299

By:

Neupane, Saraswoti;
Finlay, Roger D.;
Kyrpides, Nikos C.;
Goodwin, Lynne;
Alström, Sadhna;
Lucas, Susan;
Land, Miriam;
Han, James;
Lapidus, Alla;
Jan-Fang Cheng;
Bruce, David;
Pitluck, Sam;
Peters, Lin;
Ovchinnikova, Galina;
Held, Brittany;
Cliff Han;
Detter, John C.;
Tapia, Roxanne;
Hauser, Loren;
Ivanova, Natalia

Publication type:

Article

Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology.

Published in:

Environmental Microbiology, 2016, v. 18, n. 4, p. 1122, doi. 10.1111/1462-2920.13095

By:

Oulas, Anastasis;
Polymenakou, Paraskevi N.;
Seshadri, Rekha;
Tripp, H. James;
Mandalakis, Manolis;
Paez ‐ Espino, A. David;
Pati, Amrita;
Chain, Patrick;
Nomikou, Paraskevi;
Carey, Steven;
Kilias, Stephanos;
Christakis, Christos;
Kotoulas, Georgios;
Magoulas, Antonios;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

A call for standardized classification of metagenome projects.

Published in:

2010

By:

Ivanova, Natalia;
Tringe, Susannah G.;
Liolios, Konstantinos;
Wen-Tso Liu;
Morrison, Norman;
Hugenholtz, Philip;
Kyrpides, Nikos C.

Publication type:

Other

Focus: Synergistetes.

Published in:

2009

By:

Hugenholtz, Philip;
Hooper, Sean D.;
Kyrpides, Nikos C.

Publication type:

Other

A changing of the guard.

Published in:

2009

By:

Hugenholtz, Philip;
Kyrpides, Nikos C.

Publication type:

Other

Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 3, p. 354, doi. 10.1038/s41396-022-01345-1

By:

Camargo, Antonio P.;
de Souza, Rafael S. C.;
Jose, Juliana;
Gerhardt, Isabel R.;
Dante, Ricardo A.;
Mukherjee, Supratim;
Huntemann, Marcel;
Kyrpides, Nikos C.;
Carazzolle, Marcelo F.;
Arruda, Paulo

Publication type:

Article

Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 5, p. 1337, doi. 10.1038/s41396-021-01178-4

By:

Bowers, Robert M.;
Nayfach, Stephen;
Schulz, Frederik;
Jungbluth, Sean P.;
Ruhl, Ilona A.;
Sheremet, Andriy;
Lee, Janey;
Goudeau, Danielle;
Eloe-Fadrosh, Emiley A.;
Stepanauskas, Ramunas;
Malmstrom, Rex R.;
Kyrpides, Nikos C.;
Dunfield, Peter F.;
Woyke, Tanja

Publication type:

Article

Feathermoss and epiphytic Nostoc cooperate differently: expanding the spectrum of plant-cyanobacteria symbiosis.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 12, p. 2821, doi. 10.1038/ismej.2017.134

By:

Warshan, Denis;
Espinoza, Josh L;
Stuart, Rhona K;
Richter, R Alexander;
Kim, Sea-Yong;
Shapiro, Nicole;
Woyke, Tanja;
C Kyrpides, Nikos;
Barry, Kerrie;
Singan, Vasanth;
Lindquist, Erika;
Ansong, Charles;
Purvine, Samuel O;
M Brewer, Heather;
Weyman, Philip D;
Dupont, Christopher L;
Rasmussen, Ulla

Publication type:

Article

Succession in the petroleum reservoir microbiome through an oil field production lifecycle.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 9, p. 2141, doi. 10.1038/ismej.2017.78

By:

Vigneron, Adrien;
Alsop, Eric B;
Lomans, Bartholomeus P;
Kyrpides, Nikos C;
Head, Ian M;
Tsesmetzis, Nicolas

Publication type:

Article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 8, p. 1645, doi. 10.1038/ismej.2014.18

By:

Williams, Timothy J;
Allen, Michelle A;
DeMaere, Matthew Z;
Kyrpides, Nikos C;
Tringe, Susannah G;
Woyke, Tanja;
Cavicchioli, Ricardo

Publication type:

Article

Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 8, p. 1752, doi. 10.1038/ismej.2014.65

By:

Williams, Timothy J;
Allen, Michelle A;
DeMaere, Matthew Z;
Kyrpides, Nikos C;
Tringe, Susannah G;
Woyke, Tanja;
Cavicchioli, Ricardo

Publication type:

Article

Individual genome assembly from complex community short-read metagenomic datasets.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 4, p. 898, doi. 10.1038/ismej.2011.147

By:

Luo, Chengwei;
Tsementzi, Despina;
Kyrpides, Nikos C;
Konstantinidis, Konstantinos T

Publication type:

Article

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 1, p. 122, doi. 10.1038/ismej.2010.125

By:

Lykidis, Athanasios;
Chen, Chia-Lung;
Tringe, Susannah G;
McHardy, Alice C;
Copeland, Alex;
Kyrpides, Nikos C;
Hugenholtz, Philip;
Macarie, Hervé;
Olmos, Alejandro;
Monroy, Oscar;
Liu, Wen-Tso

Publication type:

Article

COVID-19 pandemic reveals the peril of ignoring metadata standards.

Published in:

Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0524-5

By:

Schriml, Lynn M.;
Chuvochina, Maria;
Davies, Neil;
Eloe-Fadrosh, Emiley A.;
Finn, Robert D.;
Hugenholtz, Philip;
Hunter, Christopher I.;
Hurwitz, Bonnie L.;
Kyrpides, Nikos C.;
Meyer, Folker;
Mizrachi, Ilene Karsch;
Sansone, Susanna-Assunta;
Sutton, Granger;
Tighe, Scott;
Walls, Ramona

Publication type:

Article

A synthesis of bacterial and archaeal phenotypic trait data.

Published in:

Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0497-4

By:

Madin, Joshua S.;
Nielsen, Daniel A.;
Brbic, Maria;
Corkrey, Ross;
Danko, David;
Edwards, Kyle;
Engqvist, Martin K. M.;
Fierer, Noah;
Geoghegan, Jemma L.;
Gillings, Michael;
Kyrpides, Nikos C.;
Litchman, Elena;
Mason, Christopher E.;
Moore, Lisa;
Nielsen, Søren L.;
Paulsen, Ian T.;
Price, Nathan D.;
Reddy, T. B. K.;
Richards, Matthew A.;
Rocha, Eduardo P. C.

Publication type:

Article

Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

Published in:

Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3

By:

Högfors-Rönnholm, Eva;
Lopez-Fernandez, Margarita;
Christel, Stephan;
Brambilla, Diego;
Huntemann, Marcel;
Clum, Alicia;
Foster, Brian;
Foster, Bryce;
Roux, Simon;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mukherjee, Supratim;
Reddy, T. B. K.;
Daum, Chris;
Copeland, Alex;
Chen, I-Min A.;
Ivanova, Natalia N.;
Kyrpides, Nikos C.;
Harmon-Smith, Miranda;
Eloe-Fadrosh, Emiley A.

Publication type:

Article

Discovery of Novel Plant Interaction Determinants from the Genomes of 163 Root Nodule Bacteria.

Published in:

Scientific Reports, 2015, p. 16825, doi. 10.1038/srep16825

By:

Kyrpides, Nikos C.;
Seshadri, Rekha;
Tennessen, Kristin;
Woyke, Tanja;
Ivanova, Natalia N.;
Reeve, Wayne G.;
Ardley, Julie K.

Publication type:

Article

Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.

Published in:

Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00468

By:

Hördt, Anton;
López, Marina García;
Meier-Kolthoff, Jan P.;
Schleuning, Marcel;
Weinhold, Lisa-Maria;
Tindall, Brian J.;
Gronow, Sabine;
Kyrpides, Nikos C.;
Woyke, Tanja;
Göker, Markus

Publication type:

Article