Works by Kyrpides, Nikos

Results: 236

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains.

Published in:

PLoS Biology, 2014, v. 12, n. 8, p. 1, doi. 10.1371/journal.pbio.1001920

By:

Kyrpides, Nikos C.;
Hugenholtz, Philip;
Eisen, Jonathan A.;
Woyke, Tanja;
Göker, Markus;
Parker, Charles T.;
Amann, Rudolf;
Beck, Brian J.;
Chain, Patrick S. G.;
Chun, Jongsik;
Colwell, Rita R.;
Danchin, Antoine;
Dawyndt, Peter;
Dedeurwaerdere, Tom;
DeLong, Edward F.;
Detter, John C.;
De Vos, Paul;
Donohue, Timothy J.;
Dong, Xiu-Zhu;
Ehrlich, Dusko S.

Publication type:

Article

The Genomic Standards Consortium.

Published in:

PLoS Biology, 2011, v. 9, n. 6, p. 1, doi. 10.1371/journal.pbio.1001088

By:

Field, Dawn;
Amaral-Zettler, Linda;
Cochrane, Guy;
Cole, James R.;
Dawyndt, Peter;
Garrity, George M.;
Gilbert, Jack;
Glöckner, Frank Oliver;
Hirschman, Lynette;
Karsch-Mizrachi, Ilene;
Klenk, Hans-Peter;
Knight, Rob;
Kottmann, Renzo;
Kyrpides, Nikos;
Meyer, Folker;
Gil, Inigo San;
Sansone, Susanna-Assunta;
Schriml, Lynn M.;
Sterk, Peter;
Tatusova, Tatiana

Publication type:

Article

Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater.

Published in:

Antonie van Leeuwenhoek, 2017, v. 110, n. 9, p. 1189, doi. 10.1007/s10482-017-0891-x

By:

Simon, Lučka;
Škraban, Jure;
Kyrpides, Nikos;
Woyke, Tanja;
Shapiro, Nicole;
Cleenwerck, Ilse;
Vandamme, Peter;
Whitman, William;
Trček, Janja

Publication type:

Article

The Positive Role of the Ecological Community in the Genomic Revolution.

Published in:

Microbial Ecology, 2007, v. 53, n. 3, p. 507, doi. 10.1007/s00248-007-9206-5

By:

Field, Dawn;
Kyrpides, Nikos

Publication type:

Article

Genomes OnLine Database (GOLD 1.0):a monitor of complete and ongoing genome projects world‐wide.

Published in:

Bioinformatics, 1999, v. 15, n. 9, p. 773, doi. 10.1093/bioinformatics/15.9.773

By:

Kyrpides, Nikos C.

Publication type:

Article

Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.

Published in:

Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7

By:

Martínez-Hidalgo, Pilar;
Humm, Ethan A.;
Still, David W.;
Shi, Baochen;
Pellegrini, Matteo;
de la Roca, Gabriela;
Veliz, Esteban;
Maymon, Maskit;
Bru, Pierrick;
Huntemann, Marcel;
Clum, Alicia;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mukherjee, Supratim;
Reddy, T. B. K.;
Daum, Chris;
Ivanova, Natalia N.;
Kyrpides, Nikos C.;
Shapiro, Nicole;
Eloe-Fadrosh, Emiley A.

Publication type:

Article

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4

By:

Patil, Yogita;
Müller, Nicolai;
Schink, Bernhard;
Whitman, William B.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Daum, Chris;
Shapiro, Nicole;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja;
Junghare, Madan

Publication type:

Article

High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2

By:

Reeve, Wayne;
van Berkum, Peter;
Ardley, Julie;
Tian, Rui;
Gollagher, Margaret;
Marinova, Dora;
Elia, Patrick;
Reddy, T. B. K.;
Pillay, Manoj;
Varghese, Neha;
Seshadri, Rekha;
Ivanova, Natalia;
Woyke, Tanja;
Baeshen, Mohamed N.;
Baeshen, Nabih A.;
Kyrpides, Nikos

Publication type:

Article

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6

By:

Jian-Yu Jiao;
Carro, Lorena;
Lan Liu;
Xiao-Yang Gao;
Xiao-Tong Zhang;
Hozzein, Wael N.;
Lapidus, Alla;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha;
Hadjithomas, Michalis;
Ivanova, Natalia N.;
Göker, Markus;
Pillay, Manoj;
Eisen, Jonathan A.;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0220-z

By:

Aserse, Aregu Amsalu;
Woyke, Tanja;
Kyrpides, Nikos C.;
Whitman, William B.;
Lindström, Kristina

Publication type:

Article

Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0229-3

By:

Hutt, Lee P.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, Tatiparthi;
Daum, Chris;
Shapiro, Nicole;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja;
Boden, Rich

Publication type:

Article

High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0212-4

By:

Klonowska, Agnieszka;
López-López, Aline;
Moulin, Lionel;
Ardley, Julie;
Gollagher, Margaret;
Marinova, Dora;
Tian, Rui;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Seshadri, Rekha;
Baeshen, Mohamed N.;
Baeshen, Nabih A.;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0216-0

By:

Nouioui, Imen;
Göker, Markus;
Carro, Lorena;
Montero-Calasanz, Maria del Carmen;
Rohde, Manfred;
Woyke, Tanja;
Kyrpides, Nikos C.;
Klenk, Hans-Peter

Publication type:

Article

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.

Published in:

Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0203-5

By:

Tsesmetzis, Nicolas;
Yilmaz, Pelin;
Marks, Peter C.;
Kyrpides, Nikos C.;
Head, Ian M.;
Lomans, Bart P.

Publication type:

Article

Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.

Published in:

Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0

By:

Boden, Rich;
Hutt, Lee P.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, Tatiparthi;
Chew Yee Ngan;
Daum, Chris;
Shapiro, Nicole;
Markowitz, Victor;
Ivanova, Natalia;
Woyke, Tanja;
Kyrpides, Nikos

Publication type:

Article

An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1T.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0193-3

By:

Nicholson, Wayne L.;
Davis, Christina L.;
Shapiro, Nicole;
Huntemann, Marcel;
Clum, Alicia;
Reddy, T. B. K.;
Pillay, Manoj;
Markowitz, Victor;
Varghese, Neha;
Pati, Amrita;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja

Publication type:

Article

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0184-4

By:

Melton, Emily Denise;
Sorokin, Dimitry Y.;
Overmars, Lex;
Chertkov, Olga;
Clum, Alicia;
Pillay, Manoj;
Ivanova, Natalia;
Shapiro, Nicole;
Kyrpides, Nikos C.;
Woyke, Tanja;
Lapidus, Alla L.;
Muyzer, Gerard

Publication type:

Article

High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2

By:

Peña, Arantxa;
Busquets, Antonio;
Gomila, Margarita;
Mulet, Magdalena;
Gomila, Rosa M.;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
García-Valdés, Elena;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Lalucat, Jorge

Publication type:

Article

Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0168-4

By:

Rice, Marlen C.;
Norton, Jeanette M.;
Valois, Frederica;
Bollmann, Annette;
Bottomley, Peter J.;
Klotz, Martin G.;
Laanbroek, Hendrikus J.;
Suwa, Yuichi;
Stein, Lisa Y.;
Sayavedra-Soto, Luis;
Woyke, Tanja;
Shapiro, Nicole;
Goodwin, Lynne A.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Kyrpides, Nikos;
Varghese, Neha;
Mikhailova, Natalia;
Markowitz, Victor

Publication type:

Article

High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7

By:

Gehlot, Hukam Singh;
Ardley, Julie;
Tak, Nisha;
Rui Tian;
Poonar, Neetu;
Meghwal, Raju R.;
Rathi, Sonam;
Tiwari, Ravi;
Adnawani, Wan;
Seshadri, Rekha;
Reddy, T. B. K.;
Pati, Amrita;
Woyke, Tanja;
Pillay, Manoj;
Markowitz, Victor;
Baeshen, Mohammed N.;
Al-Hejin, Ahmed M.;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9

By:

Panschin, Irina;
Sixing Huang;
Meier-Kolthoff, Jan P.;
Tindall, Brian J.;
Rohde, Manfred;
Verbarg, Susanne;
Lapidus, Alla;
Han, James;
Trong, Stephan;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T).

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x

By:

Kappler, Ulrike;
Davenport, Karen;
Beatson, Scott;
Lapidus, Alla;
Pan, Chongle;
Han, Cliff;
del Carmen Montero-Calasanz, Maria;
Land, Miriam;
Hauser, Loren;
Rohde, Manfred;
Göker, Markus;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0148-8

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0143-0

By:

Kanukollu, Saranya;
Voget, Sonja;
Pohlner, Marion;
Vandieken, Verona;
Petersen, Jörn;
Kyrpides, Nikos;
Woyke, Tanja;
Shapiro, Nicole;
Göker, Markus;
Klenk, Hans-Peter;
Cypionka, Heribert;
Engelen, Bert

Publication type:

Article

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Tennessen, Kristin;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775, a plant pathogen of French bean pods.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0127-5

By:

Aizenberg-Gershtein, Yana;
Izhaki, Ido;
Lapidus, Alla;
Copeland, Alex;
Reddy, TBK;
Huntemann, Marcel;
Pillay, Manoj;
Markowitz, Victor;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Halpern, Malka

Publication type:

Article

Complete genome sequence of Methanospirillum hungatei type strain JF1.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0124-8

By:

Gunsalus, Robert;
Cook, Lauren;
Crable, Bryan;
Rohlin, Lars;
McDonald, Erin;
Mouttaki, Housna;
Sieber, Jessica;
Poweleit, Nicole;
Zhou, Hong;
Lapidus, Alla;
Daligault, Hajnalka;
Land, Miriam;
Gilna, Paul;
Ivanova, Natalia;
Kyrpides, Nikos;
Culley, David;
McInerney, Michael

Publication type:

Article

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0128-4

By:

Susanti, Dwi;
Johnson, Eric;
Lapidus, Alla;
Han, James;
Reddy, T.;
Pilay, Manoj;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos;
Mukhopadhyay, Biswarup

Publication type:

Article

High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0119-5

By:

Ardley, Julie;
Tian, Rui;
O'Hara, Graham;
Seshadri, Rekha;
Reddy, T.;
Pati, Amrita;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Howieson, John;
Reeve, Wayne

Publication type:

Article

Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0115-9

By:

Tiwari, Ravi;
Howieson, John;
Yates, Ron;
Tian, Rui;
Held, Britanny;
Tapia, Roxanne;
Han, Cliff;
Seshadri, Rekha;
Reddy, T.;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0100-3

By:

Billings, Andrew;
Fortney, Julian;
Hazen, Terry;
Simmons, Blake;
Davenport, Karen;
Goodwin, Lynne;
Ivanova, Natalia;
Kyrpides, Nikos;
Mavromatis, Konstantinos;
Woyke, Tanja;
DeAngelis, Kristen

Publication type:

Article

Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0097-7

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

High-quality draft genome sequence of Gracilimonas tropica CL-CB462 (DSM 19535), isolated from a Synechococcus culture.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0088-8

By:

Choi, Dong;
Ahn, Chisang;
Jang, Gwang;
Lapidus, Alla;
Han, James;
Reddy, T.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Rohde, Manfred;
Tindall, Brian;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Cho, Byung

Publication type:

Article

Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0080-3

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0077-y

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0078-x

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0073-2

By:

Eshraghi, Leila;
De Meyer, Sofie;
Tian, Rui;
Seshadri, Rekha;
Ivanova, Natalia;
Pati, Amrita;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos;
Tiwari, Ravi;
Yates, Ron;
Howieson, John;
Reeve, Wayne

Publication type:

Article

High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0048-3

By:

De Meyer, Sofie;
Tian, Rui;
Seshadri, Rekha;
Ivanova, Natalia;
Pati, Amrita;
Markowitz, Victor;
Woyke, Tanja;
Yates, Ron;
Howieson, John;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1

By:

McIlroy, Simon J.;
Lapidus, Alla;
Thomsen, Trine R.;
Han, James;
Haynes, Matthew;
Lobos, Elizabeth;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Markowitz, Victor;
Verbarg, Susanne;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Nielsen, Per H.

Publication type:

Article

High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7T, and emended description of the genus Halotalea.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7

By:

Ntougias, Spyridon;
Lapidus, Alla;
Copeland, Alex;
Reddy, T. B. K.;
Pati, Amrita;
Ivanova, Natalia N.;
Markowitz, Victor M.;
Klenk, Hans-Peter;
Woyke, Tanja;
Fasseas, Constantinos;
Kyrpides, Nikos C.;
Zervakis, Georgios I.

Publication type:

Article

Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009PT), a representative of the Roseobacter group.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0050-9

By:

Lau, Stanley C. K.;
Riedel, Thomas;
Fiebig, Anne;
Han, James;
Huntemann, Marcel;
Petersen, Jörn;
Ivanova, Natalia N.;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Kyrpides, Nikos C.;
Klenk, Hans-Peter;
Pei-Yuan Qian

Publication type:

Article

High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0049-2

By:

Reeve, Wayne;
Sullivan, John;
Ronson, Clive;
Rui Tian;
Munk, Christine;
Han, Cliff;
Reddy, T. B. K.;
Seshadri, Rekha;
Woyke, Tanja;
Pati, Amrita;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos

Publication type:

Article

Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x

By:

Shetty, Ameesha R.;
de Gannes, Vidya;
Obi, Chioma C.;
Lucas, Susan;
Lapidus, Alla;
Jan-Fang Cheng;
Goodwin, Lynne A.;
Pitluck, Samuel;
Peters, Linda;
Mikhailova, Natalia;
Teshima, Hazuki;
Han, Cliff;
Tapia, Roxanne;
Land, Miriam;
Hauser, Loren J.;
Kyrpides, Nikos;
Ivanova, Natalia;
Pagani, Ioanna;
Chain, Patrick S. G.;
Denef, Vincent J

Publication type:

Article

High quality draft genome sequence of Corynebacterium ulceribovis type strain IMMIB-L1395T (DSM 45146T).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0036-7

By:

Yassin, Atteyet F.;
Lapidus, Alla;
Han, James;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Burkholderia sp. strain UYPR1.413.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0018-9

By:

De Meyer, Sofie E.;
Fabiano, Elena;
Tian, Rui;
Van Berkum, Peter;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia;
Pati, Amrita;
Woyke, Tanja;
Howieson, John;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Large-scale contamination of microbial isolate genomes by Illumina PhiX control.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-18

By:

Mukherjee, Supratim;
Huntemann, Marcel;
Ivanova, Natalia;
Kyrpides, Nikos C.;
Pati, Amrita

Publication type:

Article

High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884T) isolated from a Chironomus sp. egg mass.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4

By:

Laviad, Sivan;
Lapidus, Alla;
Han, James;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Lang, Elke;
Rohde, Manfred;
Markowitz, Victor;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Halpern, Malka

Publication type:

Article

High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0007-z

By:

Tian, Rui;
Parker, Matthew;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia;
Pati, Amrita;
Woyke, Tanja;
Baeshen, Mohammed;
Baeshen, Nabih;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0006-0

By:

Tian, Rui;
Parker, Matthew;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia;
Pati, Amrita;
Woyke, Tanja;
Baeshen, Mohammed N.;
Baeshen, Nabih A.;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High-quality permanent draft genome sequence of the Parapiptadenia rigida-nodulating Cupriavidus sp. strain UYPR2.512.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-13

By:

De Meyer, Sofie E.;
Fabiano, Elena;
Tian, Rui;
Van Berkum, Peter;
Seshadri, Rekha;
Reddy, T. B. K.;
Markowitz, Victor;
Ivanova, Natalia N.;
Pati, Amrita;
Woyke, Tanja;
Howieson, John;
Kyrpides, Nikos C.;
Reeve, Wayne

Publication type:

Article