Works matching AU Kyrpides, Nikos

Results: 236

Leichte Neucodierung von Selenocystein in der Natur.

Published in:

Angewandte Chemie, 2016, v. 128, n. 17, p. 5423, doi. 10.1002/ange.201511657

By:

Mukai, Takahito;
Englert, Markus;
Tripp, H. James;
Miller, Corwin;
Ivanova, Natalia N.;
Rubin, Edward M.;
Kyrpides, Nikos C.;
Söll, Dieter

Publication type:

Article

The Positive Role of the Ecological Community in the Genomic Revolution.

Published in:

Microbial Ecology, 2007, v. 53, n. 3, p. 507, doi. 10.1007/s00248-007-9206-5

By:

Field, Dawn;
Kyrpides, Nikos

Publication type:

Article

Estimating DNA coverage and abundance in metagenomes using a gamma approximation.

Published in:

Bioinformatics, 2010, v. 26, n. 3, p. 295, doi. 10.1093/bioinformatics/btp687

By:

Hooper, Sean D.;
Dalevi, Daniel;
Pati, Amrita;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

IMG ER: a system for microbial genome annotation expert review and curation.

Published in:

Bioinformatics, 2009, v. 25, n. 17, p. 2271, doi. 10.1093/bioinformatics/btp393

By:

Markowitz, Victor M.;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Chen, I-Min A.;
Chu, Ken;
Kyrpides, Nikos C.

Publication type:

Article

Annotation of metagenome short reads using proxygenes.

Published in:

Bioinformatics, 2008, v. 24, n. 16, p. i7, doi. 10.1093/bioinformatics/btn276

By:

Daniel Dalevi;
Natalia N. Ivanova;
Konstantinos Mavromatis;
Sean D. Hooper;
Ernest Szeto;
Philip Hugenholtz;
Nikos C. Kyrpides;
Victor M. Markowitz

Publication type:

Article

The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.735911

By:

Eardly, Bertrand;
Meor Osman, Wan Adnawani;
Ardley, Julie;
Zandberg, Jaco;
Gollagher, Margaret;
van Berkum, Peter;
Elia, Patrick;
Marinova, Dora;
Seshadri, Rekha;
Reddy, T. B. K.;
Ivanova, Natalia;
Pati, Amrita;
Woyke, Tanja;
Kyrpides, Nikos;
Loedolff, Matthys;
Laird, Damian W.;
Reeve, Wayne

Publication type:

Article

The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-145

By:

Anderson, Iain J.;
Dharmarajan, Lakshmi;
Rodriguez, Jason;
Hooper, Sean;
Porat, Iris;
Ulrich, Luke E.;
Elkins, James G.;
Mavromatis, Kostas;
Hui Sun;
Land, Miriam;
Lapidus, Alla;
Lucas, Susan;
Barry, Kerrie;
Huber, Harald;
Zhulin, Igor B.;
Whitman, William B.;
Mukhopadhyay, Biswarup;
Woese, Carl;
Bristow, James;
Kyrpides, Nikos

Publication type:

Article

Genomes OnLine Database (GOLD 1.0):a monitor of complete and ongoing genome projects world‐wide.

Published in:

Bioinformatics, 1999, v. 15, n. 9, p. 773, doi. 10.1093/bioinformatics/15.9.773

By:

Kyrpides, Nikos C.

Publication type:

Article

The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25646-9

By:

Martin, Kara;
Schmidt, Katrin;
Toseland, Andrew;
Boulton, Chris A.;
Barry, Kerrie;
Beszteri, Bánk;
Brussaard, Corina P. D.;
Clum, Alicia;
Daum, Chris G.;
Eloe-Fadrosh, Emiley;
Fong, Allison;
Foster, Brian;
Foster, Bryce;
Ginzburg, Michael;
Huntemann, Marcel;
Ivanova, Natalia N.;
Kyrpides, Nikos C.;
Lindquist, Erika;
Mukherjee, Supratim;
Palaniappan, Krishnaveni

Publication type:

Article

Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0118285

By:

Petit, Elsa;
Coppi, Maddalena V.;
Hayes, James C.;
Tolonen, Andrew C.;
Warnick, Thomas;
Latouf, William G.;
Amisano, Danielle;
Biddle, Amy;
Mukherjee, Supratim;
Ivanova, Natalia;
Lykidis, Athanassios;
Land, Miriam;
Hauser, Loren;
Kyrpides, Nikos;
Henrissat, Bernard;
Lau, Joanne;
Schnell, Danny J.;
Church, George M.;
Leschine, Susan B.;
Blanchard, Jeffrey L.

Publication type:

Article

Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation.

Published in:

PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109738

By:

Billis, Konstantinos;
Billini, Maria;
Tripp, H. James;
Kyrpides, Nikos C.;
Mavromatis, Konstantinos

Publication type:

Article

Comparative Metagenomic and Metatranscriptomic Analysis of Hindgut Paunch Microbiota in Wood- and Dung-Feeding Higher Termites.

Published in:

PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0061126

By:

He, Shaomei;
Ivanova, Natalia;
Kirton, Edward;
Allgaier, Martin;
Bergin, Claudia;
Scheffrahn, Rudolf H.;
Kyrpides, Nikos C.;
Warnecke, Falk;
Tringe, Susannah G.;
Hugenholtz, Philip

Publication type:

Article

Improving Microbial Genome Annotations in an Integrated Database Context.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0054859

By:

Chen, I-Min A.;
Markowitz, Victor M.;
Chu, Ken;
Anderson, Iain;
Mavromatis, Konstantinos;
Kyrpides, Nikos C.;
Ivanova, Natalia N.

Publication type:

Article

The Fast Changing Landscape of Sequencing Technologies and Their Impact on Microbial Genome Assemblies and Annotation.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0048837

By:

Mavromatis, Konstantinos;
Land, Miriam L.;
Brettin, Thomas S.;
Quest, Daniel J.;
Copeland, Alex;
Clum, Alicia;
Goodwin, Lynne;
Woyke, Tanja;
Lapidus, Alla;
Klenk, Hans Peter;
Cottingham, Robert W.;
Kyrpides, Nikos C.

Publication type:

Article

IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project.

Published in:

PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040151

By:

Markowitz, Victor M.;
Chen, I-Min A.;
Chu, Ken;
Szeto, Ernest;
Palaniappan, Krishna;
Jacob, Biju;
Ratner, Anna;
Liolios, Konstantinos;
Pagani, Ioanna;
Huntemann, Marcel;
Mavromatis, Konstantinos;
Ivanova, Natalia N.;
Kyrpides, Nikos C.

Publication type:

Article

Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0039331

By:

Anderson, Iain;
Abt, Birte;
Lykidis, Athanasios;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Ivanova, Natalia

Publication type:

Article

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030087

By:

Luo, Chengwei;
Tsementzi, Despina;
Kyrpides, Nikos;
Read, Timothy;
Konstantinidis, Konstantinos T.

Publication type:

Article

The Complete Genome Sequence of Thermoproteus tenax: A Physiologically Versatile Member of the Crenarchaeota.

Published in:

PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0024222

By:

Siebers, Bettina;
Zaparty, Melanie;
Raddatz, Guenter;
Tjaden, Britta;
Albers, Sonja-Verena;
Bell, Steve D.;
Blombach, Fabian;
Kletzin, Arnulf;
Kyrpides, Nikos;
Lanz, Christa;
Plagens, André;
Rampp, Markus;
Rosinus, Andrea;
Jan, Mathias von;
Makarova, Kira S.;
Klenk, Hans-Peter;
Schuster, Stephan C.;
Hensel, Reinhard

Publication type:

Article

Novel Insights into the Diversity of Catabolic Metabolism from Ten Haloarchaeal Genomes.

Published in:

PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020237

By:

Anderson, Iain;
Scheuner, Carmen;
Göker, Markus;
Mavromatis, Kostas;
Hooper, Sean D.;
Porat, Iris;
Klenk, Hans-Peter;
Ivanova, Natalia;
Kyrpides, Nikos

Publication type:

Article

The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrade.

Published in:

PLoS ONE, 2010, v. 5, n. 3, p. 1, doi. 10.1371/journal.pone.0009729

By:

Lykidis, Athanasios;
Pérez-Pantoja, Danilo;
Ledger, Thomas;
Mavromatis, Kostantinos;
Anderson, Iain J.;
Ivanova, Natalia N.;
Hooper, Sean D.;
Lapidus, Alla;
Lucas, Susan;
González, Bernardo;
Kyrpides, Nikos C.

Publication type:

Article

Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens.

Published in:

PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005797

By:

Anderson, Iain;
Ulrich, Luke E.;
Lupa, Boguslaw;
Susanti, Dwi;
Porat, Iris;
Hooper, Sean D.;
Lykidis, Athanasios;
Sieprawska-Lupa, Magdalena;
Dharmarajan, Lakshmi;
Goltsman, Eugene;
Lapidus, Alla;
Saunders, Elizabeth;
Han, Cliff;
Land, Miriam;
Lucas, Susan;
Mukhopadhyay, Biswarup;
Whitman, William B.;
Woese, Carl;
Bristow, James;
Kyrpides, Nikos

Publication type:

Article

Genome Analysis of the Anaerobic Thermohalophilic Bacterium Halothermothrix orenii.

Published in:

PLoS ONE, 2009, v. 4, n. 1, p. 1, doi. 10.1371/journal.pone.0004192

By:

Mavromatis, Konstantinos;
Ivanova, Natalia;
Anderson, Iain;
Lykidis, Athanasios;
Hooper, Sean D.;
Hui Sun;
Kunin, Victor;
Lapidus, Alla;
Hugenholtz, Philip;
Patel, Bharat;
Kyrpides, Nikos C.

Publication type:

Article

Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6623-z

By:

Klonowska, Agnieszka;
Moulin, Lionel;
Ardley, Julie Kaye;
Braun, Florence;
Gollagher, Margaret Mary;
Zandberg, Jaco Daniel;
Marinova, Dora Vasileva;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha Jacob;
Woyke, Tanja;
Ivanova, Natalia;
Seshadri, Rekha;
Kyrpides, Nikos;
Reeve, Wayne Gerald

Publication type:

Article

Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-019-6410-x

By:

Strepis, Nikolaos;
Naranjo, Henry D.;
Meier-Kolthoff, Jan;
Göker, Markus;
Shapiro, Nicole;
Kyrpides, Nikos;
Klenk, Hans-Peter;
Schaap, Peter J.;
Stams, Alfons J. M.;
Sousa, Diana Z.

Publication type:

Article

Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0268-9

By:

Melton, Emily Denise;
Sorokin, Dimitry Y.;
Overmars, Lex;
Lapidus, Alla L.;
Pillay, Manoj;
Ivanova, Natalia;
del Rio, Tijana Glavina;
Kyrpides, Nikos C.;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0270-2

By:

Meor Osman, Wan Adnawani;
van Berkum, Peter;
León-Barrios, Milagros;
Velázquez, Encarna;
Elia, Patrick;
Rui Tian;
Ardley, Julie;
Gollagher, Margaret;
Seshadri, Rekha;
Reddy, T. B. K.;
Ivanova, Natalia;
Woyke, Tanja;
Pati, Amrita;
Markowitz, Victor;
Baeshen, Mohamed N.;
Nabeeh Baeshen, Naseebh;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0216-0

By:

Nouioui, Imen;
Göker, Markus;
Carro, Lorena;
Montero-Calasanz, Maria del Carmen;
Rohde, Manfred;
Woyke, Tanja;
Kyrpides, Nikos C.;
Klenk, Hans-Peter

Publication type:

Article

High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6

By:

Laviad-Shitrit, Sivan;
Göker, Markus;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Daum, Chris;
Shapiro, Nicole;
Markowitz, Victor;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Halpern, Malka

Publication type:

Article

High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2

By:

Reeve, Wayne;
van Berkum, Peter;
Ardley, Julie;
Tian, Rui;
Gollagher, Margaret;
Marinova, Dora;
Elia, Patrick;
Reddy, T. B. K.;
Pillay, Manoj;
Varghese, Neha;
Seshadri, Rekha;
Ivanova, Natalia;
Woyke, Tanja;
Baeshen, Mohamed N.;
Baeshen, Nabih A.;
Kyrpides, Nikos

Publication type:

Article

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4

By:

Patil, Yogita;
Müller, Nicolai;
Schink, Bernhard;
Whitman, William B.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T. B. K.;
Daum, Chris;
Shapiro, Nicole;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja;
Junghare, Madan

Publication type:

Article

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6

By:

Jian-Yu Jiao;
Carro, Lorena;
Lan Liu;
Xiao-Yang Gao;
Xiao-Tong Zhang;
Hozzein, Wael N.;
Lapidus, Alla;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha;
Hadjithomas, Michalis;
Ivanova, Natalia N.;
Göker, Markus;
Pillay, Manoj;
Eisen, Jonathan A.;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.;
Wen-Jun Li

Publication type:

Article

Draft genome sequence of type strain HBR26T and description of Rhizobium aethiopicum sp. nov.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0220-z

By:

Aserse, Aregu Amsalu;
Woyke, Tanja;
Kyrpides, Nikos C.;
Whitman, William B.;
Lindström, Kristina

Publication type:

Article

Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0229-3

By:

Hutt, Lee P.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, Tatiparthi;
Daum, Chris;
Shapiro, Nicole;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja;
Boden, Rich

Publication type:

Article

High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0212-4

By:

Klonowska, Agnieszka;
López-López, Aline;
Moulin, Lionel;
Ardley, Julie;
Gollagher, Margaret;
Marinova, Dora;
Tian, Rui;
Huntemann, Marcel;
Reddy, T. B. K.;
Varghese, Neha;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Seshadri, Rekha;
Baeshen, Mohamed N.;
Baeshen, Nabih A.;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9

By:

Panschin, Irina;
Sixing Huang;
Meier-Kolthoff, Jan P.;
Tindall, Brian J.;
Rohde, Manfred;
Verbarg, Susanne;
Lapidus, Alla;
Han, James;
Trong, Stephan;
Haynes, Matthew;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia N.;
Mavromatis, Konstantinos;
Markowitz, Victor;
Woyke, Tanja;
Göker, Markus;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.

Published in:

Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0203-5

By:

Tsesmetzis, Nicolas;
Yilmaz, Pelin;
Marks, Peter C.;
Kyrpides, Nikos C.;
Head, Ian M.;
Lomans, Bart P.

Publication type:

Article

Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.

Published in:

Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0

By:

Boden, Rich;
Hutt, Lee P.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, Tatiparthi;
Chew Yee Ngan;
Daum, Chris;
Shapiro, Nicole;
Markowitz, Victor;
Ivanova, Natalia;
Woyke, Tanja;
Kyrpides, Nikos

Publication type:

Article

An improved high-quality draft genome sequence of Carnobacterium inhibens subsp. inhibens strain K1T.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0193-3

By:

Nicholson, Wayne L.;
Davis, Christina L.;
Shapiro, Nicole;
Huntemann, Marcel;
Clum, Alicia;
Reddy, T. B. K.;
Pillay, Manoj;
Markowitz, Victor;
Varghese, Neha;
Pati, Amrita;
Ivanova, Natalia;
Kyrpides, Nikos;
Woyke, Tanja

Publication type:

Article

Complete genome sequence of Desulfurivibrio alkaliphilus strain AHT2T, a haloalkaliphilic sulfidogen from Egyptian hypersaline alkaline lakes.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0184-4

By:

Melton, Emily Denise;
Sorokin, Dimitry Y.;
Overmars, Lex;
Chertkov, Olga;
Clum, Alicia;
Pillay, Manoj;
Ivanova, Natalia;
Shapiro, Nicole;
Kyrpides, Nikos C.;
Woyke, Tanja;
Lapidus, Alla L.;
Muyzer, Gerard

Publication type:

Article

High quality draft genome sequences of Pseudomonas fulva DSM 17717T, Pseudomonas parafulva DSM 17004T and Pseudomonas cremoricolorata DSM 17059T type strains.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2

By:

Peña, Arantxa;
Busquets, Antonio;
Gomila, Margarita;
Mulet, Magdalena;
Gomila, Rosa M.;
Reddy, T. B. K.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
García-Valdés, Elena;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Lalucat, Jorge

Publication type:

Article

Complete genome of Nitrosospira briensis C-128, an ammonia-oxidizing bacterium from agricultural soil.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0168-4

By:

Rice, Marlen C.;
Norton, Jeanette M.;
Valois, Frederica;
Bollmann, Annette;
Bottomley, Peter J.;
Klotz, Martin G.;
Laanbroek, Hendrikus J.;
Suwa, Yuichi;
Stein, Lisa Y.;
Sayavedra-Soto, Luis;
Woyke, Tanja;
Shapiro, Nicole;
Goodwin, Lynne A.;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Kyrpides, Nikos;
Varghese, Neha;
Mikhailova, Natalia;
Markowitz, Victor

Publication type:

Article

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0148-8

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7

By:

Gehlot, Hukam Singh;
Ardley, Julie;
Tak, Nisha;
Rui Tian;
Poonar, Neetu;
Meghwal, Raju R.;
Rathi, Sonam;
Tiwari, Ravi;
Adnawani, Wan;
Seshadri, Rekha;
Reddy, T. B. K.;
Pati, Amrita;
Woyke, Tanja;
Pillay, Manoj;
Markowitz, Victor;
Baeshen, Mohammed N.;
Al-Hejin, Ahmed M.;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T).

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x

By:

Kappler, Ulrike;
Davenport, Karen;
Beatson, Scott;
Lapidus, Alla;
Pan, Chongle;
Han, Cliff;
del Carmen Montero-Calasanz, Maria;
Land, Miriam;
Hauser, Loren;
Rohde, Manfred;
Göker, Markus;
Ivanova, Natalia;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos C.

Publication type:

Article

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Tennessen, Kristin;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0143-0

By:

Kanukollu, Saranya;
Voget, Sonja;
Pohlner, Marion;
Vandieken, Verona;
Petersen, Jörn;
Kyrpides, Nikos;
Woyke, Tanja;
Shapiro, Nicole;
Göker, Markus;
Klenk, Hans-Peter;
Cypionka, Heribert;
Engelen, Bert

Publication type:

Article

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775, a plant pathogen of French bean pods.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0127-5

By:

Aizenberg-Gershtein, Yana;
Izhaki, Ido;
Lapidus, Alla;
Copeland, Alex;
Reddy, TBK;
Huntemann, Marcel;
Pillay, Manoj;
Markowitz, Victor;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Halpern, Malka

Publication type:

Article

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0128-4

By:

Susanti, Dwi;
Johnson, Eric;
Lapidus, Alla;
Han, James;
Reddy, T.;
Pilay, Manoj;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos;
Mukhopadhyay, Biswarup

Publication type:

Article

Complete genome sequence of Methanospirillum hungatei type strain JF1.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0124-8

By:

Gunsalus, Robert;
Cook, Lauren;
Crable, Bryan;
Rohlin, Lars;
McDonald, Erin;
Mouttaki, Housna;
Sieber, Jessica;
Poweleit, Nicole;
Zhou, Hong;
Lapidus, Alla;
Daligault, Hajnalka;
Land, Miriam;
Gilna, Paul;
Ivanova, Natalia;
Kyrpides, Nikos;
Culley, David;
McInerney, Michael

Publication type:

Article

High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0119-5

By:

Ardley, Julie;
Tian, Rui;
O'Hara, Graham;
Seshadri, Rekha;
Reddy, T.;
Pati, Amrita;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Howieson, John;
Reeve, Wayne

Publication type:

Article