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PredIL13: Stacking a variety of machine and deep learning methods with ESM-2 language model for identifying IL13-inducing peptides.
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- PLoS ONE, 2024, v. 19, n. 8, p. 1, doi. 10.1371/journal.pone.0309078
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Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2′-O-methylation sites in human RNA.
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- PLoS ONE, 2024, v. 19, n. 6, p. 1, doi. 10.1371/journal.pone.0305406
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- Article
Automatic Generation of SBML Kinetic Models from Natural Language Texts Using GPT.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7296, doi. 10.3390/ijms24087296
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- Article
MLAGO: machine learning-aided global optimization for Michaelis constant estimation of kinetic modeling.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05009-x
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- Article
ICAN: Interpretable cross-attention network for identifying drug and target protein interactions.
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- PLoS ONE, 2022, v. 17, n. 10, p. 1, doi. 10.1371/journal.pone.0276609
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- Article
iACVP: markedly enhanced identification of anti-coronavirus peptides using a dataset-specific word2vec model.
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- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac265
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- Article
BERT6mA: prediction of DNA N6-methyladenine site using deep learning-based approaches.
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- Briefings in Bioinformatics, 2022, v. 23, n. 2, p. 1, doi. 10.1093/bib/bbac053
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- Article
NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab167
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- Article
LSTM-PHV: prediction of human-virus protein–protein interactions by LSTM with word2vec.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab228
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- Article
Critical evaluation of web-based DNA N6-methyladenine site prediction tools.
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- Briefings in Functional Genomics, 2021, v. 20, n. 4, p. 258, doi. 10.1093/bfgp/elaa028
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- Article
Fabrication and Characterisation of Organic EL Devices in the Presence of Cyclodextrin as an Interlayer.
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- Sensors (14248220), 2021, v. 21, n. 11, p. 3666, doi. 10.3390/s21113666
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- Article
Meta-i6mA: an interspecies predictor for identifying DNA N<sup>6</sup>-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning framework.
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- Briefings in Bioinformatics, 2021, v. 22, n. 3, p. 1, doi. 10.1093/bib/bbaa202
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- Article
PredNTS: Improved and Robust Prediction of Nitrotyrosine Sites by Integrating Multiple Sequence Features.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 5, p. 2704, doi. 10.3390/ijms22052704
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- Article
IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representations.
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- Journal of Computer-Aided Molecular Design, 2021, v. 35, n. 3, p. 315, doi. 10.1007/s10822-020-00368-0
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- Article
PUP-Fuse: Prediction of Protein Pupylation Sites by Integrating Multiple Sequence Representations.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 4, p. 2120, doi. 10.3390/ijms22042120
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- Article
RCGAToolbox: A Real-coded Genetic Algorithm Software for Parameter Estimation of Kinetic Models.
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- IPSJ Transactions on Bioinformatics, 2021, v. 14, n. 1, p. 30, doi. 10.2197/ipsjtbio.14.30
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- Article
ProIn-Fuse: improved and robust prediction of proinflammatory peptides by fusing of multiple feature representations.
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- Journal of Computer-Aided Molecular Design, 2020, v. 34, n. 12, p. 1229, doi. 10.1007/s10822-020-00343-9
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- Article
Asymmetric Amination of meso-Epoxide with Vegetable Powder as a Low-Toxicity Catalyst.
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- Molecules, 2020, v. 25, n. 14, p. 3197, doi. 10.3390/molecules25143197
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- Article
i6mA-Fuse: improved and robust prediction of DNA 6 mA sites in the Rosaceae genome by fusing multiple feature representation.
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- Plant Molecular Biology, 2020, v. 103, n. 1/2, p. 225, doi. 10.1007/s11103-020-00988-y
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- Article
Chiral Tetraarylmethane Derivative with Metal‐Coordinating Ability.
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- Asian Journal of Organic Chemistry, 2020, v. 9, n. 4, p. 448, doi. 10.1002/ajoc.202000132
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- Article
Chiral Tetraarylmethane Derivative with Metal‐Coordinating Ability.
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- Asian Journal of Organic Chemistry, 2020, v. 9, n. 4, p. 652, doi. 10.1002/ajoc.201900760
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- Article
Improvement of the memory function of a mutual repression network in a stochastic environment by negative autoregulation.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3315-2
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- Article
Self-replenishment cycles generate a threshold response.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-53589-1
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- Article
Efficient computational model for identification of antitubercular peptides by integrating amino acid patterns and properties.
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- FEBS Letters, 2019, v. 593, n. 21, p. 3029, doi. 10.1002/1873-3468.13536
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- Article
Computational identification of microbial phosphorylation sites by the enhanced characteristics of sequence information.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-44548-x
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- Article
Ranking network mechanisms by how they fit diverse experiments and deciding on E. coli's ammonium transport and assimilation network.
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- NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0091-6
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- Article
PreAIP: Computational Prediction of Anti-inflammatory Peptides by Integrating Multiple Complementary Features.
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- Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00129
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- Article
Large-Scale Assessment of Bioinformatics Tools for Lysine Succinylation Sites.
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- Cells (2073-4409), 2019, v. 8, n. 2, p. 95, doi. 10.3390/cells8020095
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- Article
GPSuc: Global Prediction of Generic and Species-specific Succinylation Sites by aggregating multiple sequence features.
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- PLoS ONE, 2018, v. 13, n. 10, p. 1, doi. 10.1371/journal.pone.0200283
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- Article
Modeling and simulation of the redox regulation of the metabolism in Escherichia coli at different oxygen concentrations.
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- Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0867-0
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- Article
Robustness analysis of the detailed kinetic model of an ErbB signaling network by using dynamic sensitivity.
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- PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0178250
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- Article
In vitro evaluation of a combination treatment involving anticancer agents and an aurora kinase B inhibitor.
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- Oncology Letters, 2016, v. 12, n. 5, p. 4263, doi. 10.3892/ol.2016.5156
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- Article
Development of an accurate kinetic model for the central carbon metabolism of Escherichia coli.
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- Microbial Cell Factories, 2016, v. 15, p. 1, doi. 10.1186/s12934-016-0511-x
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- Article
S-system-based analysis of the robust properties common to many biochemical network models.
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- Bioprocess & Biosystems Engineering, 2016, v. 39, n. 5, p. 735, doi. 10.1007/s00449-016-1554-4
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- Article
Isolation of a Hydrogen-Bonded Complex Based on the Anthranol/Anthroxyl Pair: Formation of a Hydrogen-Atom Self-Exchange System.
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- Angewandte Chemie, 2015, v. 127, n. 8, p. 2432, doi. 10.1002/ange.201410796
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- Article
Isolation of a Hydrogen-Bonded Complex Based on the Anthranol/Anthroxyl Pair: Formation of a Hydrogen-Atom Self-Exchange System.
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- Angewandte Chemie International Edition, 2015, v. 54, n. 8, p. 2402, doi. 10.1002/anie.201410796
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- Article
Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivity.
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- BMC Systems Biology, 2014, v. 8, p. 1, doi. 10.1186/1752-0509-8-S5-S1
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- Article
CADLIVE toolbox for MATLAB: automatic dynamic modeling of biochemical networks with comprehensive system analysis.
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- Bioprocess & Biosystems Engineering, 2014, v. 37, n. 9, p. 1925, doi. 10.1007/s00449-014-1167-8
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- Article
BioFNet: biological functional network database for analysis and synthesis of biological systems.
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- Briefings in Bioinformatics, 2014, v. 15, n. 5, p. 699, doi. 10.1093/bib/bbt048
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- Article
Dual Association Modes of the 2,5,8-Tris(pentafluorophenyl)phenalenyl Radical.
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- Chemistry - An Asian Journal, 2014, v. 9, n. 7, p. 1823, doi. 10.1002/asia.201402187
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- Article
Shift-Peristrophic Multiplexing for High Density Holographic Data Storage.
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- Applied Sciences (2076-3417), 2014, v. 4, n. 2, p. 148, doi. 10.3390/app4020148
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- Article
Anthenes: Model systems for understanding the edge state of graphene nanoribbons.
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- Pure & Applied Chemistry, 2014, v. 86, n. 4, p. 497, doi. 10.1515/pac-2013-0811
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- Article
Bicyclo[6.3.0]undecapentaenyl Anion: The Next Higher Homolog of the Indenyl Anion with Exceptionally Large Ion-Pairing Effects on its Tropicity.
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- Chemistry - An Asian Journal, 2014, v. 9, n. 3, p. 893, doi. 10.1002/asia.201301307
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- Article
Numerical Model of Radical Photopolymerization Based on Interdiffusion.
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- International Journal of Polymer Science, 2014, p. 1, doi. 10.1155/2014/243895
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- Article
Flux module decomposition for parameter estimation in a multiple-feedback loop model of biochemical networks.
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- Bioprocess & Biosystems Engineering, 2013, v. 36, n. 3, p. 333, doi. 10.1007/s00449-012-0789-y
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- Article
3,14-Bis( p-nitrophenyl)-17,17-dipentyltetrabenzo[ a,c,g,i]-fluorene: A New Fluorophore Displaying Both Remarkable Solvatochromism and Crystalline-Induced Emission.
- Published in:
- Chemistry - An Asian Journal, 2013, v. 8, n. 2, p. 392, doi. 10.1002/asia.201200976
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- Article
Application of Approximate Pattern Matching in Two Dimensional Spaces to Grid Layout for Biochemical Network Maps.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0037739
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- Article
A Symmetric Dual Feedback System Provides a Robust and Entrainable Oscillator.
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- PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030489
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- Article
Synthesis, Electronic, and Morphological Properties of Tetrahedral Oligothiophenes with n-Hexyl Terminal Groups.
- Published in:
- Chemistry - An Asian Journal, 2012, v. 7, n. 1, p. 225, doi. 10.1002/asia.201100639
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- Article
CADLIVE optimizer: web-based parameter estimation for dynamic models.
- Published in:
- Source Code for Biology & Medicine, 2012, v. 7, n. 1, p. 9, doi. 10.1186/1751-0473-7-9
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- Article