Works by Kuramitsu, Seiki

Results: 105

Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3′–5′ exonuclease activity.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 6, p. 2037, doi. 10.1093/nar/gkp064

By:

Nakane, Shuhei;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Analysis of a nuclease activity of catalytic domain of Thermus thermophilus MutS2 by high-accuracy mass spectrometry.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 15, p. e100, doi. 10.1093/nar/gkm575

By:

Fukui, Kenji;
Takahata, Yoshio;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 3, p. 850, doi. 10.1093/nar/gkl735

By:

Fukui, Kenji;
Kosaka, Hiromichi;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Overexpression, purification and characterization of RecJ protein from Thermus thermophilus HB8 and its core domain.

Published in:

Nucleic Acids Research, 2001, v. 29, n. 22, p. 4617, doi. 10.1093/nar/29.22.4617

By:

Yamagata, Atsushi;
Masui, Ryoji;
Kakuta, Yoshimitsu;
Kuramitsu, Seiki;
Fukuyama, Keiichi

Publication type:

Article

Domain organization and functional analysis of Thermus thermophilus MutS protein.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 18, p. 4153, doi. 10.1093/nar/26.18.4153

By:

Tachiki, Hidehisa;
Kato, Ryuichi;
Masui, Ryoji;
Hasegawa, Koichi;
Itakura, Hiroyuki;
Fukuyama, Keiichi;
Kuramitsu, Seiki

Publication type:

Article

Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia.

Published in:

EMBO Journal, 2005, v. 24, n. 8, p. 1523, doi. 10.1038/sj.emboj.7600632

By:

Nakai, Tadashi;
Nakagawa, Noriko;
Maoka, Nobuko;
Masui, Ryoji;
Kuramitsu, Seiki;
Kamiya, Nobuo

Publication type:

Article

A putative adenosine kinase family protein possesses adenosine diphosphatase activity.

Published in:

Bioscience, Biotechnology & Biochemistry, 2016, v. 80, n. 11, p. 2138, doi. 10.1080/09168451.2016.1214532

By:

Tomoike, Fumiaki;
Tsunetou, Akiko;
Kim, Kwang;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Separation of heat-stable proteins from Thermus thermophilus HB8 by two-dimensional electrophoresis.

Published in:

Electrophoresis, 1995, v. 16, n. 1, p. 1060, doi. 10.1002/elps.11501601176

By:

Kawaguchi, Shin-ichi;
Kuramitsu, Seiki

Publication type:

Article

Identification and characterization of tRNA (Gm18) methyltransferase from Thermus thermophilus HB8: domain structure and conserved amino acid sequence motifs.

Published in:

Genes to Cells, 2002, v. 7, n. 3, p. 259, doi. 10.1046/j.1365-2443.2002.00520.x

By:

Hori, Hiroyuki;
Suzuki, Tsutomu;
Sugawara, Kazumasa;
Inoue, Yorinao;
Shibata, Takehiko;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Oshima, Tairo;
Watanabe, Kimitsuna

Publication type:

Article

Insights into thermal resistance of proteins from the intrinsic stability of their α-helices.

Published in:

Proteins, 1997, v. 29, n. 3, p. 309, doi. 10.1002/(SICI)1097-0134(199711)29:3<309::AID-PROT5>3.0.CO;2-5

By:

Petukhov, Michael;
Kil, Yuri;
Kuramitsu, Seiki;
Lanzov, Vladislav

Publication type:

Article

The role of ribonucleases in regulating global mRNA levels in the model organism Thermus thermophilus HB8.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-386

By:

Ohyama, Hiromasa;
Sakai, Tomofumi;
Agari, Yoshihiro;
Fukui, Kenji;
Nakagawa, Noriko;
Shinkai, Akeo;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus.

Published in:

Extremophiles, 2017, v. 21, n. 2, p. 283, doi. 10.1007/s00792-016-0901-3

By:

Okanishi, Hiroki;
Kim, Kwang;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-β-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains.

Published in:

Extremophiles, 2016, v. 20, n. 3, p. 275, doi. 10.1007/s00792-016-0817-y

By:

Nakabayashi, Makoto;
Shibata, Naoki;
Ishido-Nakai, Emi;
Kanagawa, Mayumi;
Iio, Yota;
Komori, Hirofumi;
Ueda, Yasufumi;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Higuchi, Yoshiki

Publication type:

Article

Roles of Mn-catalase and a possible heme peroxidase homologue in protection from oxidative stress in Thermus thermophilus.

Published in:

Extremophiles, 2015, v. 19, n. 4, p. 775, doi. 10.1007/s00792-015-0753-2

By:

Ebihara, Akio;
Manzoku, Miho;
Fukui, Kenji;
Shimada, Atsuhiro;
Morita, Rihito;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Small-angle X-ray scattering analysis reveals the ATP-bound monomeric state of the ATPase domain from the homodimeric MutL endonuclease, a GHKL phosphotransferase superfamily protein.

Published in:

Extremophiles, 2015, v. 19, n. 3, p. 643, doi. 10.1007/s00792-015-0745-2

By:

Iino, Hitoshi;
Hikima, Takaaki;
Nishida, Yuya;
Yamamoto, Masaki;
Kuramitsu, Seiki;
Fukui, Kenji

Publication type:

Article

Crystal structure and in silico studies of dihydrodipicolinate synthase (DHDPS) from Aquifex aeolicus.

Published in:

Extremophiles, 2014, v. 18, n. 6, p. 973, doi. 10.1007/s00792-014-0667-4

By:

Sridharan, Upasana;
Ebihara, Akio;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kumarevel, Thirumananseri;
Ponnuraj, Karthe

Publication type:

Article

Genome-wide comprehensive analysis of transcriptional regulation by ArgR in Thermus thermophilus.

Published in:

Extremophiles, 2014, v. 18, n. 6, p. 995, doi. 10.1007/s00792-014-0669-2

By:

Iwanaga, Naoki;
Ide, Kaori;
Nagashima, Takeshi;
Tomita, Takeo;
Agari, Yoshihiro;
Shinkai, Akeo;
Kuramitsu, Seiki;
Okada-Hatakeyema, Mariko;
Kuzuyama, Tomohisa;
Nishiyama, Makoto

Publication type:

Article

Unique substrate specificity of purine nucleoside phosphorylases from Thermus thermophilus.

Published in:

Extremophiles, 2013, v. 17, n. 3, p. 505, doi. 10.1007/s00792-013-0535-7

By:

Tomoike, Fumiaki;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus.

Published in:

Extremophiles, 2008, v. 12, n. 2, p. 217, doi. 10.1007/s00792-007-0118-6

By:

Kondo, Naoyuki;
Nishikubo, Takashi;
Wakamatsu, Taisuke;
Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

A recombinational defect in the C-terminal domain of Escherichia coli RecA2278-5 protein is compensated by protein binding to ATP.

Published in:

Molecular Microbiology, 1997, v. 23, n. 3, p. 255, doi. 10.1046/j.1365-2958.1997.1961557.x

By:

Alexseyev, Andrey A.;
Baitin, Dmitry M.;
Kuramitsu, Seiki;
Ogawa, Tomoko;
Ogawa, Hideyuki;
Lanzov, Vladislav A.

Publication type:

Article

A recombinational defect in the C-terminal domain of <em>Escherichia coli</em> RecA2278-5 protein is compensated by protein binding to ATP.

Published in:

Molecular Microbiology, 1997, v. 23, n. 2, p. 255, doi. 10.1046/j.1365-2958.1997.1961557.x

By:

Alexseyev, Andrey A.;
Baitin, Dmitry M.;
Kuramitsu, Seiki;
Ogawa, Tomoko;
Ogawa, Hideyuki;
Lanzov, Vladislav A.

Publication type:

Article

Crystal structure analysis and molecular dynamics simulations of arginase from Thermus thermophilus.

Published in:

Journal of Biomolecular Structure & Dynamics, 2023, v. 41, n. 14, p. 6811, doi. 10.1080/07391102.2022.2112615

By:

K, Dhanalakshmi;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Thirumananseri, Kumarevel;
Ponnuraj, Karthe

Publication type:

Article

Application of Bis(terpyridine)ruthenium(II) to N-Terminal Amino Acid Sequencing.

Published in:

Chemistry Letters, 2005, v. 34, n. 3, p. 332, doi. 10.1246/cl.2005.332

By:

Okamura, Taka-aki;
Iwamura, Taku;
Ito, Akihiro;
Kaneko, Maki;
Yamaguchi, Minoru;
Yamamoto, Hitoshi;
Ueyama, Norikazu;
Kuyama, Hiroki;
Ando, Eiji;
Norioka, Shigemi;
Nakazawa, Takashi;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

Published in:

Molecular Microbiology, 2014, v. 93, n. 2, p. 390, doi. 10.1111/mmi.12667

By:

Agari, Yoshihiro;
Kashihara, Aiko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

Published in:

Molecular Microbiology, 2008, v. 70, n. 1, p. 60, doi. 10.1111/j.1365-2958.2008.06388.x

By:

Agari, Yoshihiro;
Kashihara, Aiko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of the Metallo-β-lactamase Superfamily.

Published in:

Journal of Biochemistry, 2006, v. 140, n. 4, p. 535, doi. 10.1093/jb/mvj183

By:

Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Interaction Analysis between tmRNA and SmpB from Thermus thermophilus.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 6, p. 729, doi. 10.1093/jb/mvi180

By:

Nameki, Nobukazu;
Someya, Tatsuhiko;
Okano, Satoshi;
Suemasa, Reiko;
Kimoto, Michiko;
Hanawa-Suetsugu, Kyoko;
Terada, Takaho;
Shirouzu, Mikako;
Hirao, Ichiro;
Takaku, Hiroshi;
Himeno, Hyouta;
Muto, Akira;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article

Novel Reaction Mechanism of GTP Cyclohydrolase I. High-Resolution X-Ray Crystallography of Thermus thermophilus HB8 Enzyme Complexed with a Transition State Analogue, the 8-Oxoguanine Derivative.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 3, p. 263, doi. 10.1093/jb/mvi120

By:

Tanaka, Yoko;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Masui, Ryoji

Publication type:

Article

A Novel Metal-Activated l-Serine O-Acetyltransferase from Thermus thermophilus HB8.

Published in:

Journal of Biochemistry, 2004, v. 136, n. 5, p. 629, doi. 10.1093/jb/mvh170

By:

Kobayashi, Shin-ichiro;
Masui, Ryoji;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Takagi, Hiroshi

Publication type:

Article

Biochemical Characterization of TT1383 from Thermus thermophilus Identifies a Novel dNTP Triphosphohydrolase Activity Stimulated by dATP and dTTP.

Published in:

Journal of Biochemistry, 2004, v. 136, n. 2, p. 221, doi. 10.1093/jb/mvh115

By:

Kondo, Naoyuki;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Thermus thermophilus MutS2, a MutS Paralogue, Possesses an Endonuclease Activity Promoted by MutL.

Published in:

Journal of Biochemistry, 2004, v. 135, n. 3, p. 375, doi. 10.1093/jb/mvh045

By:

Fukui, Kenji;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Substrate Recognition Mechanism of Thermophilic Dual-Substrate Enzyme1.

Published in:

Journal of Biochemistry, 2001, v. 130, n. 1, p. 89, doi. 10.1093/oxfordjournals.jbchem.a002966

By:

Ura, Hideaki;
Nakai, Tadashi;
Kawaguchi, Shin-ichi;
Miyahara, Ikuko;
Hirotsu, Ken;
Kuramitsu, Seiki

Publication type:

Article

Demonstration of the Importance and Usefulness of Manipulating Non-Active-Site Residues in Protein Design1.

Published in:

Journal of Biochemistry, 2001, v. 129, n. 6, p. 943, doi. 10.1093/oxfordjournals.jbchem.a002941

By:

Shimotohno, Akie;
Oue, Shinya;
Yano, Takato;
Kuramitsu, Seiki;
Kagamiyama, Hiroyuki

Publication type:

Article

Temperature Dependence of the Enzyme-Substrate Recognition Mechanism1.

Published in:

Journal of Biochemistry, 2001, v. 129, n. 1, p. 173, doi. 10.1093/oxfordjournals.jbchem.a002829

By:

Ura, Hideaki;
Harata, Kazuaki;
Matsui, Ikuo;
Kuramitsu, Seiki

Publication type:

Article

Crystallization and Preliminary X-Ray Crystallographic Studies of Thermus thermophilus HB8 MutM Protein Involved in Repairs of Oxidative DNA Damage.

Published in:

Journal of Biochemistry, 2000, v. 127, n. 1, p. 9, doi. 10.1093/oxfordjournals.jbchem.a022588

By:

Sugahara, Mitsuaki;
Mikawa, Tsutomu;
Kato, Ryuichi;
Fukuyama, Keiichi;
Kumasaka, Takashi;
Yamamoto, Masaki;
Inoue, Yorinao;
Kuramitsu, Seiki

Publication type:

Article

Crystal Structure of Thermus thermophilus HB8 UvrB Protein, a Key Enzyme of Nucleotide Excision Repair1.

Published in:

Journal of Biochemistry, 1999, v. 126, n. 6, p. 986, doi. 10.1093/oxfordjournals.jbchem.a022566

By:

Nakagawa, Noriko;
Sugahara, Mitsuaki;
Masui, Ryoji;
Kato, Ryuichi;
Fukuyama, Keiichi;
Kuramitsu, Seiki

Publication type:

Article

Directed Evolution of Thermostable Kanamycin-Resistance Gene: A Convenient Selection Marker for Thermus thermophilus1.

Published in:

Journal of Biochemistry, 1999, v. 126, n. 5, p. 951, doi. 10.1093/oxfordjournals.jbchem.a022539

By:

Hoseki, Jun;
Yano, Takato;
Koyama, Yoshinori;
Kuramitsu, Seiki;
Kagamiyama, Hiroyuki

Publication type:

Article

Cloning of the RNA Polymerase α Subunit Gene from Thermus thermophilus HB8 and Characterization of the Protein1.

Published in:

Journal of Biochemistry, 1999, v. 125, n. 1, p. 143, doi. 10.1093/oxfordjournals.jbchem.a022251

By:

Wada, Takashi;
Yamazaki, Toshio;
Kuramitsu, Seiki;
Kyogoku, Yoshimasa

Publication type:

Article

RecA Protein Has Extremely High Cooperativity for Substrate in Its ATPase Activity1.

Published in:

Journal of Biochemistry, 1998, v. 123, n. 3, p. 450, doi. 10.1093/oxfordjournals.jbchem.a021958

By:

Mikawa, Tsutomu;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Enzyme Flexibility: A New Concept in Recognition of Hydrophobic Substrates1.

Published in:

Journal of Biochemistry, 1997, v. 122, n. 1, p. 55, doi. 10.1093/oxfordjournals.jbchem.a021740

By:

Kawaguchi, Shin-ichi;
Nobe, Yuko;
Yasuoka, Jun-ichi;
Wakamiya, Tateaki;
Kusumoto, Shoichi;
Kuramitsu, Seiki

Publication type:

Article

An Aspartate Aminotransferase from an Extremely Thermophilic Bacterium, Thermus thermophilus HB81.

Published in:

Journal of Biochemistry, 1996, v. 119, n. 1, p. 135, doi. 10.1093/oxfordjournals.jbchem.a021198

By:

Okamoto, Akihiro;
Kato, Ryuichi;
Masui, Ryoji;
Yamagishi, Akihiko;
Oshima, Tairo;
Kuramitsu, Seiki

Publication type:

Article

Corrigendum: Fast native-SAD phasing for routine macromolecular structure determination.

Published in:

Nature Methods, 2015, v. 12, n. 7, p. 692, doi. 10.1038/nmeth0715-692a

By:

Weinert, Tobias;
Olieric, Vincent;
Waltersperger, Sandro;
Panepucci, Ezequiel;
Chen, Lirong;
Zhang, Hua;
Zhou, Dayong;
Rose, John;
Ebihara, Akio;
Kuramitsu, Seiki;
Li, Dianfan;
Howe, Nicole;
Schnapp, Gisela;
Pautsch, Alexander;
Bargsten, Katja;
Prota, Andrea E;
Surana, Parag;
Kottur, Jithesh;
Nair, Deepak T;
Basilico, Federica

Publication type:

Article

Fast native-SAD phasing for routine macromolecular structure determination.

Published in:

Nature Methods, 2015, v. 12, n. 2, p. 131, doi. 10.1038/nmeth.3211

By:

Weinert, Tobias;
Olieric, Vincent;
Waltersperger, Sandro;
Panepucci, Ezequiel;
Chen, Lirong;
Zhang, Hua;
Zhou, Dayong;
Rose, John;
Ebihara, Akio;
Kuramitsu, Seiki;
Li, Dianfan;
Howe, Nicole;
Schnapp, Gisela;
Pautsch, Alexander;
Bargsten, Katja;
Prota, Andrea E;
Surana, Parag;
Kottur, Jithesh;
Nair, Deepak T;
Basilico, Federica

Publication type:

Article

Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin.

Published in:

Invertebrate Neuroscience, 2008, v. 8, n. 2, p. 71, doi. 10.1007/s10158-008-0069-3

By:

Makoto Ihara;
Toshihide Okajima;
Atsuko Yamashita;
Takuma Oda;
Koichi Hirata;
Hisashi Nishiwaki;
Takako Morimoto;
Miki Akamatsu;
Yuji Ashikawa;
Shun’ichi Kuroda;
Ryosuke Mega;
Seiki Kuramitsu;
David Sattelle;
Kazuhiko Matsuda

Publication type:

Article

Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1154, doi. 10.1093/bioinformatics/bti071

By:

Shuhei Kimura;
Kaori Ide;
Aiko Kashihara;
Makoto Kano;
Mariko Hatakeyama;
Ryoji Masui;
Noriko Nakagawa;
Shigeyuki Yokoyama;
Seiki Kuramitsu;
Akihiko Konagaya

Publication type:

Article

Thermostable repair enzyme for oxidative DNA damage from extremely thermophilic bacterium, Thermus thermophilus HB8.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 4, p. 903, doi. 10.1093/nar/26.4.903

By:

Mikawa, Tsutomu;
Kato, Ryuichi;
Sugahara, Mitsuaki;
Kuramitsu, Seiki

Publication type:

Article

Mismatch DNA Recognition Protein from an Extremely Thermophilic Bacterium, Thermus Thermophilus HB8.

Published in:

Nucleic Acids Research, 1996, v. 24, n. 4, p. 640, doi. 10.1093/nar/24.4.640

By:

Takamatsu, Satoko;
Kato, Ryuichi;
Kuramitsu, Seiki

Publication type:

Article

Characterization of C- and N-terminal domains of Aquifex aeolicus MutL endonuclease: N-terminal domain stimulates the endonuclease activity of C-terminal domain in a zinc-dependent manner.

Published in:

Bioscience Reports, 2011, v. 31, n. 5, p. 309, doi. 10.1042/BSR20100116

By:

IINO, Hitoshi;
KIM, Kwang;
SHIMADA, Atsuhiro;
MASUI, Ryoji;
KURAMITSU, Seiki;
FUKUI, Kenji

Publication type:

Article

Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus.

Published in:

Journal of Biochemistry, 2016, v. 159, n. 3, p. 313, doi. 10.1093/jb/mvv107

By:

Mayumi Kanagawa;
Seiki Baba;
Yuzo Watanabe;
Noriko Nakagawa;
Akio Ebihara;
Seiki Kuramitsu;
Shigeyuki Yokoyama;
Gen-ichi Sampei;
Gota Kawai

Publication type:

Article

Structures and reaction mechanisms of the two related enzymes, PurN and PurU.

Published in:

Journal of Biochemistry, 2013, v. 154, n. 6, p. 569, doi. 10.1093/jb/mvt090

By:

Sampei, Gen-ichi;
Kanagawa, Mayumi;
Baba, Seiki;
Shimasaki, Toshiaki;
Taka, Hiroyuki;
Mitsui, Shohei;
Fujiwara, Shinji;
Yanagida, Yuki;
Kusano, Mayumi;
Suzuki, Sakiko;
Terao, Kayoko;
Kawai, Hiroya;
Fukai, Yoko;
Nakagawa, Noriko;
Ebihara, Akio;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article