Works matching AU Kuramitsu, Seiki

Results: 105

Simultaneous detection of N-terminal fragment ions in a protein mixture using a ruthenium(II) complex.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2007, v. 21, n. 16, p. 2647, doi. 10.1002/rcm.3126

By:

Ito, Akihiro;
Okamura, Taka-aki;
Yamamoto, Hitoshi;
Ueyama, Norikazu;
Yamaguchi, Minoru;
Kuyama, Hiroki;
Ando, Eiji;
Tsunasawa, Susumu;
Ake, Kojiro;
Masui, Ryoji;
Kuramitsu, Seiki;
Nakazawa, Takashi;
Norioka, Shigemi

Publication type:

Article

Structural and Biochemical Studies on the Reaction Mechanism of Uridine-Cytidine Kinase.

Published in:

Protein Journal, 2015, v. 34, n. 6, p. 411, doi. 10.1007/s10930-015-9636-8

By:

Tomoike, Fumiaki;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus.

Published in:

Extremophiles, 2017, v. 21, n. 2, p. 283, doi. 10.1007/s00792-016-0901-3

By:

Okanishi, Hiroki;
Kim, Kwang;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-β-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains.

Published in:

Extremophiles, 2016, v. 20, n. 3, p. 275, doi. 10.1007/s00792-016-0817-y

By:

Nakabayashi, Makoto;
Shibata, Naoki;
Ishido-Nakai, Emi;
Kanagawa, Mayumi;
Iio, Yota;
Komori, Hirofumi;
Ueda, Yasufumi;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Higuchi, Yoshiki

Publication type:

Article

Roles of Mn-catalase and a possible heme peroxidase homologue in protection from oxidative stress in Thermus thermophilus.

Published in:

Extremophiles, 2015, v. 19, n. 4, p. 775, doi. 10.1007/s00792-015-0753-2

By:

Ebihara, Akio;
Manzoku, Miho;
Fukui, Kenji;
Shimada, Atsuhiro;
Morita, Rihito;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Small-angle X-ray scattering analysis reveals the ATP-bound monomeric state of the ATPase domain from the homodimeric MutL endonuclease, a GHKL phosphotransferase superfamily protein.

Published in:

Extremophiles, 2015, v. 19, n. 3, p. 643, doi. 10.1007/s00792-015-0745-2

By:

Iino, Hitoshi;
Hikima, Takaaki;
Nishida, Yuya;
Yamamoto, Masaki;
Kuramitsu, Seiki;
Fukui, Kenji

Publication type:

Article

Crystal structure and in silico studies of dihydrodipicolinate synthase (DHDPS) from Aquifex aeolicus.

Published in:

Extremophiles, 2014, v. 18, n. 6, p. 973, doi. 10.1007/s00792-014-0667-4

By:

Sridharan, Upasana;
Ebihara, Akio;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kumarevel, Thirumananseri;
Ponnuraj, Karthe

Publication type:

Article

Genome-wide comprehensive analysis of transcriptional regulation by ArgR in Thermus thermophilus.

Published in:

Extremophiles, 2014, v. 18, n. 6, p. 995, doi. 10.1007/s00792-014-0669-2

By:

Iwanaga, Naoki;
Ide, Kaori;
Nagashima, Takeshi;
Tomita, Takeo;
Agari, Yoshihiro;
Shinkai, Akeo;
Kuramitsu, Seiki;
Okada-Hatakeyema, Mariko;
Kuzuyama, Tomohisa;
Nishiyama, Makoto

Publication type:

Article

Unique substrate specificity of purine nucleoside phosphorylases from Thermus thermophilus.

Published in:

Extremophiles, 2013, v. 17, n. 3, p. 505, doi. 10.1007/s00792-013-0535-7

By:

Tomoike, Fumiaki;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus.

Published in:

Extremophiles, 2008, v. 12, n. 2, p. 217, doi. 10.1007/s00792-007-0118-6

By:

Kondo, Naoyuki;
Nishikubo, Takashi;
Wakamatsu, Taisuke;
Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 1154, doi. 10.1093/bioinformatics/bti071

By:

Shuhei Kimura;
Kaori Ide;
Aiko Kashihara;
Makoto Kano;
Mariko Hatakeyama;
Ryoji Masui;
Noriko Nakagawa;
Shigeyuki Yokoyama;
Seiki Kuramitsu;
Akihiko Konagaya

Publication type:

Article

Structural Characterization of Neutral and Acidic Glycolipids from Thermus thermophilus HB8.

Published in:

PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0035067

By:

Suda, Yasuo;
Okazaki, Fumiaki;
Hasegawa, Yushi;
Adachi, Seiji;
Fukase, Koichi;
Kokubo, Susumu;
Kuramitsu, Seiki;
Kusumoto, Shoichi

Publication type:

Article

Inactivation of the DNA Repair Genes mutS, mutL or the Anti-Recombination Gene mutS2 Leads to Activation of Vitamin B<sub>1</sub> Biosynthesis Genes.

Published in:

PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0019053

By:

Fukui, Kenji;
Wakamatsu, Taisuke;
Agari, Yoshihiro;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Role of alkyltransferase-like (ATL) protein in repair of methylated DNA lesions in Thermus thermophilus.

Published in:

Mutagenesis, 2011, v. 26, n. 2, p. 303, doi. 10.1093/mutage/geq093

By:

Onodera, Takefumi;
Morino, Kae;
Tokishita, Shin-ichi;
Morita, Rihito;
Masui, Ryoji;
Kuramitsu, Seiki;
Ohta, Toshihiro

Publication type:

Article

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

Published in:

Molecular Microbiology, 2014, v. 93, n. 2, p. 390, doi. 10.1111/mmi.12667

By:

Agari, Yoshihiro;
Kashihara, Aiko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Global gene expression mediated by Thermus thermophilus SdrP, a CRP/FNR family transcriptional regulator.

Published in:

Molecular Microbiology, 2008, v. 70, n. 1, p. 60, doi. 10.1111/j.1365-2958.2008.06388.x

By:

Agari, Yoshihiro;
Kashihara, Aiko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

RecA Protein Has Extremely High Cooperativity for Substrate in Its ATPase Activity1.

Published in:

Journal of Biochemistry, 1998, v. 123, n. 3, p. 450, doi. 10.1093/oxfordjournals.jbchem.a021958

By:

Mikawa, Tsutomu;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Enzyme Flexibility: A New Concept in Recognition of Hydrophobic Substrates1.

Published in:

Journal of Biochemistry, 1997, v. 122, n. 1, p. 55, doi. 10.1093/oxfordjournals.jbchem.a021740

By:

Kawaguchi, Shin-ichi;
Nobe, Yuko;
Yasuoka, Jun-ichi;
Wakamiya, Tateaki;
Kusumoto, Shoichi;
Kuramitsu, Seiki

Publication type:

Article

An Aspartate Aminotransferase from an Extremely Thermophilic Bacterium, Thermus thermophilus HB81.

Published in:

Journal of Biochemistry, 1996, v. 119, n. 1, p. 135, doi. 10.1093/oxfordjournals.jbchem.a021198

By:

Okamoto, Akihiro;
Kato, Ryuichi;
Masui, Ryoji;
Yamagishi, Akihiko;
Oshima, Tairo;
Kuramitsu, Seiki

Publication type:

Article

A putative adenosine kinase family protein possesses adenosine diphosphatase activity.

Published in:

Bioscience, Biotechnology & Biochemistry, 2016, v. 80, n. 11, p. 2138, doi. 10.1080/09168451.2016.1214532

By:

Tomoike, Fumiaki;
Tsunetou, Akiko;
Kim, Kwang;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus

Published in:

FEBS Letters, 2003, v. 535, n. 1-3, p. 94, doi. 10.1016/S0014-5793(02)03880-2

By:

Someya, Tatsuhiko;
Nameki, Nobukazu;
Hosoi, Haruko;
Suzuki, Sakura;
Hatanaka, Hideki;
Fujii, Michiko;
Terada, Takaho;
Shirouzu, Mikako;
Inoue, Yorinao;
Shibata, Takehiko;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article

Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8.

Published in:

Proteins, 2009, v. 76, n. 1, p. 244, doi. 10.1002/prot.22397

By:

Tomoike, Fumiaki;
Wakamatsu, Taisuke;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

X-ray crystal structure of a CRISPR-associated RAMP superfamily protein, Cmr5, from Thermus thermophilus HB8.

Published in:

Proteins, 2009, v. 75, n. 2, p. 528, doi. 10.1002/prot.22358

By:

Sakamoto, Keiko;
Agari, Yoshihiro;
Agari, Kazuko;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

X-ray crystal structure of a CRISPR-associated protein, Cse2, from Thermus thermophilus HB8.

Published in:

Proteins, 2008, v. 73, n. 4, p. 1063, doi. 10.1002/prot.22224

By:

Agari, Yoshihiro;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8.

Published in:

Proteins, 2008, v. 73, n. 1, p. 259, doi. 10.1002/prot.22158

By:

Morita, Rihito;
Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Crystal structure of uncharacterized protein TTHA1756 from Thermus thermophilus HB8: Structural variety in UPF0150 family proteins.

Published in:

Proteins, 2008, v. 71, n. 4, p. 2097, doi. 10.1002/prot.22018

By:

Ebihara, Akio;
Manzoku, Miho;
Iino, Hitoshi;
Kanagawa, Mayumi;
Shinkai, Akeo;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki

Publication type:

Article

X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7.

Published in:

Proteins, 2008, v. 70, n. 3, p. 1108, doi. 10.1002/prot.21794

By:

Agari, Yoshihiro;
Sato, Shinya;
Wakamatsu, Taisuke;
Bessho, Yoshitaka;
Ebihara, Akio;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Shinkai, Akeo

Publication type:

Article

Crystal structure of the single-domain rhodanese homologue TTHA0613 from Thermus thermophilus HB8.

Published in:

Proteins, 2006, v. 64, n. 1, p. 284, doi. 10.1002/prot.20937

By:

Hattori, Motoyuki;
Mizohata, Eiichi;
Tatsuguchi, Ayako;
Shibata, Rie;
Kishishita, Seiichiro;
Murayama, Kazutaka;
Terada, Takaho;
Kuramitsu, Seiki;
Shirouzu, Mikako;
Yokoyama, Shigeyuki

Publication type:

Article

Crystal structure of the hypothetical protein TTHA1013 from Thermus thermophilus HB8.

Published in:

Proteins, 2005, v. 61, n. 4, p. 1117, doi. 10.1002/prot.20692

By:

Hattori, Motoyuki;
Mizohata, Eiichi;
Manzoku, Miho;
Bessho, Yoshitaka;
Murayama, Kazutaka;
Terada, Takaho;
Kuramitsu, Seiki;
Shirouzu, Mikako;
Yokoyama, Shigeyuki

Publication type:

Article

Crystal structure of TT1662 from Thermus thermophilus HB8: A member of the α/β hydrolase fold enzymes.

Published in:

Proteins, 2005, v. 58, n. 4, p. 982, doi. 10.1002/prot.20361

By:

Murayama, Kazutaka;
Shirouzu, Mikako;
Terada, Takaho;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki

Publication type:

Article

ATP-induced structural change of dephosphocoenzyme A kinase from Thermus thermophilus HB8.

Published in:

Proteins, 2005, v. 58, n. 1, p. 235, doi. 10.1002/prot.20276

By:

Seto, Azusa;
Murayama, Kazutaka;
Toyama, Mitsutoshi;
Ebihara, Akio;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Shirouzu, Mikako;
Yokoyama, Shigeyuki

Publication type:

Article

Crystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8.

Published in:

Proteins, 2004, v. 57, n. 4, p. 883, doi. 10.1002/prot.20282

By:

Kishishita, Seiichiro;
Tatsuguchi, Ayako;
Ushikoshi-Nakayama, Ryoko;
Terada, Takaho;
Kuramitsu, Seiki;
Park, Sam-Yong;
Tame, Jeremy R. H.;
Shirouzu, Mikako;
Yokoyama, Shigeyuki

Publication type:

Article

Structural and sequence comparisons arising from the solution structure of the transcription elongation factor NusG from Thermus thermophilus.

Published in:

Proteins, 2004, v. 56, n. 1, p. 40, doi. 10.1002/prot.20054

By:

Reay, Paul;
Yamasaki, Kazuhiko;
Terada, Takaho;
Kuramitsu, Seiki;
Shirouzu, Mikako;
Yokoyama, Shigeyuki

Publication type:

Article

Crystal structure of a putative aspartate aminotransferase belonging to subgroup IV.

Published in:

Proteins, 2004, v. 55, n. 3, p. 487, doi. 10.1002/prot.20020

By:

Katsura, Yasuhiro;
Shirouzu, Mikako;
Yamaguchi, Hiroto;
Ishitani, Ryuichiro;
Nureki, Osamu;
Kuramitsu, Seiki;
Hayashi, Hideyuki;
Yokoyama, Shigeyuki

Publication type:

Article

Crystal structure of the conserved hypothetical protein TT1380 from Thermus thermophilus HB8.

Published in:

Proteins, 2004, v. 55, n. 3, p. 778, doi. 10.1002/prot.20122

By:

Wada, Takashi;
Shirouzu, Mikako;
Terada, Takaho;
Kamewari, Yuki;
Park, Sam-Yong;
Tame, Jeremy R.H.;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki

Publication type:

Article

Insights into thermal resistance of proteins from the intrinsic stability of their α-helices.

Published in:

Proteins, 1997, v. 29, n. 3, p. 309, doi. 10.1002/(SICI)1097-0134(199711)29:3<309::AID-PROT5>3.0.CO;2-5

By:

Petukhov, Michael;
Kil, Yuri;
Kuramitsu, Seiki;
Lanzov, Vladislav

Publication type:

Article

Application of Bis(terpyridine)ruthenium(II) to N-Terminal Amino Acid Sequencing.

Published in:

Chemistry Letters, 2005, v. 34, n. 3, p. 332, doi. 10.1246/cl.2005.332

By:

Okamura, Taka-aki;
Iwamura, Taku;
Ito, Akihiro;
Kaneko, Maki;
Yamaguchi, Minoru;
Yamamoto, Hitoshi;
Ueyama, Norikazu;
Kuyama, Hiroki;
Ando, Eiji;
Norioka, Shigemi;
Nakazawa, Takashi;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article

Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin.

Published in:

Invertebrate Neuroscience, 2008, v. 8, n. 2, p. 71, doi. 10.1007/s10158-008-0069-3

By:

Makoto Ihara;
Toshihide Okajima;
Atsuko Yamashita;
Takuma Oda;
Koichi Hirata;
Hisashi Nishiwaki;
Takako Morimoto;
Miki Akamatsu;
Yuji Ashikawa;
Shun’ichi Kuroda;
Ryosuke Mega;
Seiki Kuramitsu;
David Sattelle;
Kazuhiko Matsuda

Publication type:

Article

Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus.

Published in:

Journal of Biochemistry, 2016, v. 159, n. 3, p. 313, doi. 10.1093/jb/mvv107

By:

Mayumi Kanagawa;
Seiki Baba;
Yuzo Watanabe;
Noriko Nakagawa;
Akio Ebihara;
Seiki Kuramitsu;
Shigeyuki Yokoyama;
Gen-ichi Sampei;
Gota Kawai

Publication type:

Article

Structures and reaction mechanisms of the two related enzymes, PurN and PurU.

Published in:

Journal of Biochemistry, 2013, v. 154, n. 6, p. 569, doi. 10.1093/jb/mvt090

By:

Sampei, Gen-ichi;
Kanagawa, Mayumi;
Baba, Seiki;
Shimasaki, Toshiaki;
Taka, Hiroyuki;
Mitsui, Shohei;
Fujiwara, Shinji;
Yanagida, Yuki;
Kusano, Mayumi;
Suzuki, Sakiko;
Terao, Kayoko;
Kawai, Hiroya;
Fukai, Yoko;
Nakagawa, Noriko;
Ebihara, Akio;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article

Crystal structure of the tandem-type universal stress protein TTHA0350 from Thermus thermophilus HB8.

Published in:

Journal of Biochemistry, 2011, v. 150, n. 3, p. 295, doi. 10.1093/jb/mvr057

By:

Iino, Hitoshi;
Shimizu, Nobutaka;
Goto, Masaru;
Ebihara, Akio;
Fukui, Kenji;
Hirotsu, Ken;
Kuramitsu, Seiki

Publication type:

Article

An alkyltransferase-like protein from Thermus thermophilus HB8 affects the regulation of gene expression in alkylation response.

Published in:

Journal of Biochemistry, 2011, v. 150, n. 3, p. 327, doi. 10.1093/jb/mvr052

By:

Morita, Rihito;
Hishinuma, Hisahiro;
Ohyama, Hiromasa;
Mega, Ryosuke;
Ohta, Toshihiro;
Nakagawa, Noriko;
Agari, Yoshihiro;
Fukui, Kenji;
Shinkai, Akeo;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

An O6-methylguanine-DNA Methyltransferase-like Protein from Thermus thermophilus Interacts with a Nucleotide Excision Repair Protein.

Published in:

Journal of Biochemistry, 2008, v. 144, n. 2, p. 267, doi. 10.1093/jb/mvn065

By:

Morita, Rihito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Structural bases for the specific interactions between the E2 and E3 components of the Thermus thermophilus 2-oxo acid dehydrogenase complexes.

Published in:

Journal of Biochemistry, 2008, v. 143, n. 6, p. 747, doi. 10.1093/jb/mvn033

By:

Nakai, Tadashi;
Kuramitsu, Seiki;
Kamiya, Nobuo

Publication type:

Article

Crystal Structure of TTHA0252 from Thermus thermophilus HB8, a RNA Degradation Protein of the Metallo-β-lactamase Superfamily.

Published in:

Journal of Biochemistry, 2006, v. 140, n. 4, p. 535, doi. 10.1093/jb/mvj183

By:

Ishikawa, Hirohito;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Interaction Analysis between tmRNA and SmpB from Thermus thermophilus.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 6, p. 729, doi. 10.1093/jb/mvi180

By:

Nameki, Nobukazu;
Someya, Tatsuhiko;
Okano, Satoshi;
Suemasa, Reiko;
Kimoto, Michiko;
Hanawa-Suetsugu, Kyoko;
Terada, Takaho;
Shirouzu, Mikako;
Hirao, Ichiro;
Takaku, Hiroshi;
Himeno, Hyouta;
Muto, Akira;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article

Novel Reaction Mechanism of GTP Cyclohydrolase I. High-Resolution X-Ray Crystallography of Thermus thermophilus HB8 Enzyme Complexed with a Transition State Analogue, the 8-Oxoguanine Derivative.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 3, p. 263, doi. 10.1093/jb/mvi120

By:

Tanaka, Yoko;
Nakagawa, Noriko;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Masui, Ryoji

Publication type:

Article

A Novel Metal-Activated l-Serine O-Acetyltransferase from Thermus thermophilus HB8.

Published in:

Journal of Biochemistry, 2004, v. 136, n. 5, p. 629, doi. 10.1093/jb/mvh170

By:

Kobayashi, Shin-ichiro;
Masui, Ryoji;
Yokoyama, Shigeyuki;
Kuramitsu, Seiki;
Takagi, Hiroshi

Publication type:

Article

Biochemical Characterization of TT1383 from Thermus thermophilus Identifies a Novel dNTP Triphosphohydrolase Activity Stimulated by dATP and dTTP.

Published in:

Journal of Biochemistry, 2004, v. 136, n. 2, p. 221, doi. 10.1093/jb/mvh115

By:

Kondo, Naoyuki;
Kuramitsu, Seiki;
Masui, Ryoji

Publication type:

Article

Thermus thermophilus MutS2, a MutS Paralogue, Possesses an Endonuclease Activity Promoted by MutL.

Published in:

Journal of Biochemistry, 2004, v. 135, n. 3, p. 375, doi. 10.1093/jb/mvh045

By:

Fukui, Kenji;
Masui, Ryoji;
Kuramitsu, Seiki

Publication type:

Article