Works by Kupiec, Martin

Results: 110

The yeastVPSgenes affect telomere length regulation.

Published in:

Current Genetics, 2005, v. 47, n. 1, p. 18, doi. 10.1007/s00294-004-0548-y

By:

Rog, Ofer;
Smolikov, Sarit;
Krauskopf, Anat;
Kupiec, Martin

Publication type:

Article

Pitfalls of the synthetic lethality screen in Saccharomyces cerevisiae: an improved design.

Published in:

Current Genetics, 2003, v. 43, n. 1, p. 62, doi. 10.1007/s00294-003-0373-8

By:

Koren, Amnon;
Ben-Aroya, Shay;
Steinlauf, Rivka;
Kupiec, Martin

Publication type:

Article

Control of meiotic recombination initiation: a role for the environment?

Published in:

Current Genetics, 2002, v. 42, n. 3, p. 129, doi. 10.1007/s00294-002-0340-9

By:

Koren, Amnon;
Ben-Aroya, Shay;
Kupiec, Martin

Publication type:

Article

Recombination between divergent sequences leads to cell death in a mismatch-repair-independent manner.

Published in:

Current Genetics, 2000, v. 38, n. 1, p. 23, doi. 10.1007/s002940000124

By:

Inbar, Ori;
Kupiec, Martin

Publication type:

Article

Control of telomere length in yeast by SUMOylated PCNA and the Elg1 PCNA unloader.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.86990

By:

Singh, Pragyan;
Gazy, Inbal;
Kupiec, Martin

Publication type:

Article

Analysis of repair mechanism choice during homologous recombination.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 15, p. 5081, doi. 10.1093/nar/gkp495

By:

Agmon, Neta;
Pur, Shiri;
Liefshitz, Batia;
Kupiec, Martin

Publication type:

Article

Developmentally regulated MAPK pathways modulate heterochromatin in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 14, p. 4839, doi. 10.1093/nar/gkp512

By:

Mazor, Yuval;
Kupiec, Martin

Publication type:

Article

A complex-centric view of protein network evolution.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 12, p. e88, doi. 10.1093/nar/gkp414

By:

Yosef, Nir;
Kupiec, Martin;
Ruppin, Eytan;
Sharan, Roded

Publication type:

Article

A genome-wide screen for essential yeast genes that affect telomere length maintenance.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 12, p. 3840, doi. 10.1093/nar/gkp259

By:

Ungar, Lior;
Yosef, Nir;
Sela, Yael;
Sharan, Roded;
Ruppin, Eytan;
Kupiec, Martin

Publication type:

Article

Capture of linear fragments at a double-strand break in yeast.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 15, p. 5192, doi. 10.1093/nar/gkm521

By:

Haviv-Chesner, Anat;
Kobayashi, Yoshifumi;
Gabriel, Abram;
Kupiec, Martin

Publication type:

Article

The Saccharomyces cerevisiae gene CDC40/PRP17 controls cell cycle progression through splicing of the ANC1 gene.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2529, doi. 10.1093/nar/gkh574

By:

Dahan, Orna;
Kupiec, Martin

Publication type:

Article

Mutations in genes of Saccharomyces cerevisiae encoding pre‐mRNA splicing factors cause cell cycle arrest through activation of the spindle checkpoint.

Published in:

Nucleic Acids Research, 2002, v. 30, n. 20, p. 4361, doi. 10.1093/nar/gkf563

By:

Dahan, Orna;
Kupiec, Martin

Publication type:

Article

Composite effects of gene determinants on the translation speed and density of ribosomes.

Published in:

Genome Biology, 2011, v. 12, n. 11, p. 1, doi. 10.1186/gb-2011-12-11-r110

By:

Tuller, Tamir;
Veksler-Lublinsky, Isana;
Gazit, Nir;
Kupiec, Martin;
Ruppin, Eytan;
Ziv-Ukelson, Michal

Publication type:

Article

Cell Cycle-Dependent Regulation of Double-Strand Break Repair.

Published in:

Cell Cycle, 2005, v. 4, n. 2, p. 259, doi. 10.4161/cc.4.2.1429

By:

Aylon, Yael;
Kupiec, Martin

Publication type:

Article

Elg1, an alternative subunit of the RFC clamp loader, preferentially interacts with SUMOylated PCNA.

Published in:

EMBO Journal, 2010, v. 29, n. 15, p. 2611, doi. 10.1038/emboj.2010.128

By:

Parnas, Oren;
Zipin-Roitman, Adi;
Pfander, Boris;
Liefshitz, Batia;
Mazor, Yuval;
Ben-Aroya, Shay;
Jentsch, Stefan;
Kupiec, Martin

Publication type:

Article

The CDK regulates repair of double-strand breaks by homologous recombination during the cell cycle.

Published in:

EMBO Journal, 2004, v. 23, n. 24, p. 4868, doi. 10.1038/sj.emboj.7600469

By:

Aylon, Yael;
Liefshitz, Batia;
Kupiec, Martin

Publication type:

Article

Different sets of QTLs influence fitness variation in yeast.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.1

By:

Romano, Gal Hagit;
Gurvich, Yonat;
Lavi, Ofer;
Ulitsky, Igor;
Shamir, Ron;
Kupiec, Martin

Publication type:

Article

Toward accurate reconstruction of functional protein networks.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 248, doi. 10.1038/msb.2009.3

By:

Yosef, Nir;
Ungar, Lior;
Zalckvar, Einat;
Kimchi, Adi;
Kupiec, Martin;
Ruppin, Eytan;
Sharan, Roded

Publication type:

Article

From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.42

By:

Ulitsky, Igor;
Shlomi, Tomer;
Kupiec, Martin;
Shamir, Ron

Publication type:

Article

A systems-level approach to mapping the telomere length maintenance gene circuitry.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.13

By:

Shachar, Rafi;
Ungar, Lior;
Kupiec, Martin;
Ruppin, Eytan;
Sharan, Roded

Publication type:

Article

Genetic interactions in yeast: is robustness going bust?

Published in:

Molecular Systems Biology, 2007, v. 3, n. 1, p. 97, doi. 10.1038/msb4100146

By:

Kupiec, Martin;
Sharan, Roded;
Ruppin, Eytan

Publication type:

Article

Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium.

Published in:

Molecular Systems Biology, 2005, v. 1, n. 1, p. E1, doi. 10.1038/msb4100005

By:

Tanay, Amos;
Steinfeld, Israel;
Kupiec, Martin;
Shamir, Ron

Publication type:

Article

The extent of ribosome queuing in budding yeast.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.pcbi.1005951

By:

Diament, Alon;
Feldman, Anna;
Schochet, Elisheva;
Kupiec, Martin;
Arava, Yoav;
Tuller, Tamir

Publication type:

Article

The Rad1-Rad10 nuclease promotes chromosome translocations between dispersed repeats.

Published in:

Nature Structural & Molecular Biology, 2012, v. 19, n. 9, p. 964, doi. 10.1038/nsmb.2359

By:

Mazón, Gerard;
Lam, Alicia F;
Ho, Chu Kwen;
Kupiec, Martin;
Symington, Lorraine S

Publication type:

Article

Comparative Analysis of Normalization Methods for Network Propagation.

Published in:

Frontiers in Genetics, 2019, p. N.PAG, doi. 10.3389/fgene.2019.00004

By:

Biran, Hadas;
Kupiec, Martin;
Sharan, Roded

Publication type:

Article

Effect of nuclear architecture on the efficiency of double-strand break repair.

Published in:

Nature Cell Biology, 2013, v. 15, n. 6, p. 694, doi. 10.1038/ncb2745

By:

Agmon, Neta;
Liefshitz, Batia;
Zimmer, Christophe;
Fabre, Emmanuelle;
Kupiec, Martin

Publication type:

Article

Analysis of Coevolving Gene Families Using Mutually Exclusive Orthologous Modules.

Published in:

Genome Biology & Evolution, 2011, v. 3, p. 413, doi. 10.1093/gbe/evr030

By:

Xiuwei Zhang;
Martin Kupiec;
Uri Gophna;
Tamir Tuller

Publication type:

Article

Metabolic remodeling maintains a reducing environment for rapid activation of the yeast DNA replication checkpoint.

Published in:

EMBO Journal, 2022, v. 41, n. 4, p. 1, doi. 10.15252/embj.2021108290

By:

Li, Lili;
Wang, Jie;
Yang, Zijia;
Zhao, Yiling;
Jiang, Hui;
Jiang, Luguang;
Hou, Wenya;
Ye, Risheng;
He, Qun;
Kupiec, Martin;
Luke, Brian;
Cao, Qinhong;
Qi, Zhi;
Li, Zhen;
Lou, Huiqiang

Publication type:

Article

Ubiquitylation-dependent oligomerization regulates activity of Nedd4 ligases.

Published in:

EMBO Journal, 2017, v. 36, n. 4, p. 425, doi. 10.15252/embj.201694314

By:

Attali, Ilan;
Tobelaim, William Sam;
Persaud, Avinash;
Motamedchaboki, Khatereh;
Simpson‐Lavy, Kobi J;
Mashahreh, Bayan;
Levin‐Kravets, Olga;
Keren‐Kaplan, Tal;
Pilzer, Inbar;
Kupiec, Martin;
Wiener, Reuven;
Wolf, Dieter A;
Rotin, Daniela;
Prag, Gali

Publication type:

Article

Genome-Scale Analysis of Translation Elongation with a Ribosome Flow Model.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 9, p. 1, doi. 10.1371/journal.pcbi.1002127

By:

Reuveni, Shlomi;
Meilijson, Isaac;
Kupiec, Martin;
Ruppin, Eytan;
Tuller, Tamir

Publication type:

Article

Determinants of Protein Abundance and Translation Efficiency in S. cerevisiae.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 12, p. e248, doi. 10.1371/journal.pcbi.0030248

By:

Tuller, Tamir;
Kupiec, Martin;
Ruppin, Eytan

Publication type:

Article

Quantitative Analysis of Genetic and Neuronal Multi-Perturbation Experiments.

Published in:

PLoS Computational Biology, 2005, v. 1, n. 6, p. 500, doi. 10.1371/journal.pcbi.0010064

By:

Kaufman, Alon;
Keinan, Alon;
Meilijson, Isaac;
Kupiec, Martin;
Ruppin, Eytan;
Sander, Chris

Publication type:

Article

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.

Published in:

Nature, 2012, v. 485, n. 7397, p. 201, doi. 10.1038/nature11112

By:

Dominissini, Dan;
Moshitch-Moshkovitz, Sharon;
Schwartz, Schraga;
Salmon-Divon, Mali;
Ungar, Lior;
Osenberg, Sivan;
Cesarkas, Karen;
Jacob-Hirsch, Jasmine;
Amariglio, Ninette;
Kupiec, Martin;
Sorek, Rotem;
Rechavi, Gideon

Publication type:

Article

Adaptive prediction of environmental changes by microorganisms.

Published in:

Nature, 2009, v. 460, n. 7252, p. 220, doi. 10.1038/nature08112

By:

Mitchell, Amir;
Romano, Gal H.;
Groisman, Bella;
Yona, Avihu;
Dekel, Erez;
Kupiec, Martin;
Dahan, Orna;
Pilpel, Yitzhak

Publication type:

Article

Midzone organization restricts interpolar microtubule plus-end dynamics during spindle elongation.

Published in:

EMBO Reports, 2009, v. 10, n. 4, p. 387, doi. 10.1038/embor.2009.7

By:

Fridman, Vladimir;
Gerson-Gurwitz, Adina;
Movshovich, Natalia;
Kupiec, Martin;
Gheber, Larisa

Publication type:

Article

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription.

Published in:

Nature Genetics, 2007, v. 39, n. 3, p. 303, doi. 10.1038/ng1965

By:

Steinfeld, Israel;
Shamir, Ron;
Kupiec, Martin

Publication type:

Article

Multiple knockout analysis of genetic robustness in the yeast metabolic network.

Published in:

Nature Genetics, 2006, v. 38, n. 9, p. 993, doi. 10.1038/ng1856

By:

Deutscher, David;
Meilijson, Isaac;
Kupiec, Martin;
Ruppin, Eytan

Publication type:

Article

TOR Complex 2- independent mutations in the regulatory PIF pocket of Gad8AKT1/SGK1 define separate branches of the stress response mechanisms in fission yeast.

Published in:

PLoS Genetics, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pgen.1009196

By:

Pataki, Emese;
Simhaev, LubFtablea;
Engel, Hamutal;
Cohen, Adiel;
Kupiec, Martin;
Weisman, Ronit

Publication type:

Article

A New Method, "Reverse Yeast Two-Hybrid Array" (RYTHA), Identifies Mutants that Dissociate the Physical Interaction Between Elg1 and Slx5.

Published in:

Genetics, 2017, v. 206, n. 3, p. 1683, doi. 10.1534/genetics.117.200451

By:

Lev, Ifat;
Shemesh, Keren;
Volpe, Marina;
Sau, Soumitra;
Levinton, Nelly;
Molco, Maya;
Singh, Shivani;
Liefshitz, Batia;
Aroya, Shay Ben;
Kupiec, Martin

Publication type:

Article

Opposite Effects of Tori and Tor2 on Nitrogen Starvation Responses in Fission Yeast.

Published in:

Genetics, 2007, v. 175, n. 3, p. 1153, doi. 10.1534/genetics.106.064170

By:

Weisman, Ronit;
Roitburg, Inna;
Schonbrun, Miriam;
Harari, Rona;
Kupiec, Martin

Publication type:

Article

Regulation of Leucine Uptake by tor1+ in Schizosaccharomyces pombe Is Sensitive to Rapamycin.

Published in:

Genetics, 2005, v. 169, n. 2, p. 539, doi. 10.1534/genetics.104.034983

By:

Weisman, Ronit;
Roitburg, Irina;
Nahari, Tal;
Kupiec, Martin

Publication type:

Article

Induction of Ty recombination in yeast by cDNA and transcription: Role of the RAD1 and RAD52 genes.

Published in:

Genetics, 1996, v. 144, n. 3, p. 947, doi. 10.1093/genetics/144.3.947

By:

Nevo-Caspi, Yael;
Kupiec, Martin

Publication type:

Article

Plasmid-mediated induction of recombination in yeast.

Published in:

Genetics, 1994, v. 137, n. 1, p. 41, doi. 10.1093/genetics/137.1.41

By:

Silberman, Ran;
Kupiec, Martin

Publication type:

Article

A comparative analysis of telomere length maintenance circuits in fission and budding yeast.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.1033113

By:

Peretz, Iftah;
Kupiec, Martin;
Sharan, Roded

Publication type:

Article

Site-specific genomic (SSG) and random domain-localized (RDL) mutagenesis in yeast.

Published in:

BMC Biotechnology, 2004, v. 4, p. 7, doi. 10.1186/1472-6750-4-7

By:

Gray, Misa;
Kupiec, Martin;
Honigberg, Saul M.

Publication type:

Article

Rnr1, but not Rnr3, facilitates the sustained telomerase-dependent elongation of telomeres.

Published in:

PLoS Genetics, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pgen.1007082

By:

Maicher, André;
Gazy, Inbal;
Sharma, Sushma;
Marjavaara, Lisette;
Grinberg, Gilad;
Shemesh, Keren;
Chabes, Andrei;
Kupiec, Martin

Publication type:

Article

Carbon Catabolite Repression in Yeast is Not Limited to Glucose.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-43032-w

By:

Simpson-Lavy, Kobi;
Kupiec, Martin

Publication type:

Article

GLADIATOR: a global approach for elucidating disease modules.

Published in:

Genome Medicine, 2017, v. 9, p. 1, doi. 10.1186/s13073-017-0435-z

By:

Silberberg, Yael;
Kupiec, Martin;
Sharan, Roded

Publication type:

Article

Systematic identification of gene annotation errors in the widely used yeast mutation collections.

Published in:

Nature Methods, 2012, v. 9, n. 4, p. 373, doi. 10.1038/nmeth.1890

By:

Ben-Shitrit, Taly;
Yosef, Nir;
Shemesh, Keren;
Sharan, Roded;
Ruppin, Eytan;
Kupiec, Martin

Publication type:

Article

TOR complex 2 contributes to regulation of gene expression via inhibiting Gcn5 recruitment to subtelomeric and DNA replication stress genes.

Published in:

PLoS Genetics, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pgen.1010061

By:

Cohen, Adiel;
Pataki, Emese;
Kupiec, Martin;
Weisman, Ronit

Publication type:

Article