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Usage of Reaction Kinetics Data Stored in Databases -- A Modeler's Point of View.
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- In Silico Biology, 2007, v. 7, p. S65
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CombAlign: A Protein Sequence Comparison Algorithm Considering Recombinations.
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- In Silico Biology, 2004, v. 4, n. 3, p. 243
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A new efficient approach to fit stochastic models on the basis of high-throughput experimental data using a model of IRF7 gene expression as case study.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0406-4
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Specifying the role of BAK1‐interacting receptor‐like kinase 3 in brassinosteroid signaling.
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- Journal of Integrative Plant Biology, 2020, v. 62, n. 4, p. 456, doi. 10.1111/jipb.12803
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Distribution of control in the sulfur assimilation in Arabidopsis thaliana depends on environmental conditions.
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- New Phytologist, 2019, v. 222, n. 3, p. 1392, doi. 10.1111/nph.15704
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Advances and current challenges in calcium signaling.
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- New Phytologist, 2018, v. 218, n. 2, p. 414, doi. 10.1111/nph.14966
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An integrative view on vacuolar pH homeostasis in Arabidopsis thaliana: Combining mathematical modeling and experimentation.
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- Plant Journal, 2021, v. 106, n. 6, p. 1541, doi. 10.1111/tpj.15251
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A20/TNFAIP3 Discriminates Tumor Necrosis Factor (TNF)-Induced NF-κB from JNK Pathway Activation in Hepatocytes.
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- Frontiers in Physiology, 2017, p. 1, doi. 10.3389/fphys.2017.00610
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Information transfer in signaling pathways: A study using coupled simulated and experimental data.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-139
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A new dynamical layout algorithm for complex biochemical reaction networks.
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- BMC Bioinformatics, 2005, v. 6, p. 212, doi. 10.1186/1471-2105-6-212
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Organism-Adapted Specificity of the Allosteric Regulation of Pyruvate Kinase in Lactic Acid Bacteria.
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- PLoS Computational Biology, 2013, v. 9, n. 7, p. 1, doi. 10.1371/journal.pcbi.1003159
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What Can We Learn from Global Sensitivity Analysis of Biochemical Systems?
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- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079244
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- Article
Computational systems biology of cellular processes in Arabidopsis thaliana: an overview.
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- Cellular & Molecular Life Sciences, 2020, v. 77, n. 3, p. 433, doi. 10.1007/s00018-019-03379-9
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Spatial modeling reveals nuclear phosphorylation and subcellular shuttling of YAP upon drug-induced liver injury.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.78540
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Computational modeling and quantitative physiology reveal central parameters for brassinosteroid-regulated early cell physiological processes linked to elongation growth of the Arabidopsis root.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.73031
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Accessible methods for the dynamic time-scale decomposition of biochemical systems.
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- Bioinformatics, 2009, v. 25, n. 21, p. 2816, doi. 10.1093/bioinformatics/btp451
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SYCAMORE—a systems biology computational analysis and modeling research environment.
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- Bioinformatics, 2008, v. 24, n. 12, p. 1463, doi. 10.1093/bioinformatics/btn207
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SYCAMORE--a systems biology computational analysis and modeling research environment.
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- Bioinformatics, 2008, v. 24, n. 12, p. 1463, doi. 10.1093/bioinformatics/btn207
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- Article
COPASI—a COmplex PAthway SImulator.
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- Bioinformatics, 2006, v. 22, n. 24, p. 3067, doi. 10.1093/bioinformatics/btl485
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Quantitative systems pharmacology of interferon alpha administration: A multi-scale approach.
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- PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0209587
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Inspecting the Solution Space of Genome-Scale Metabolic Models.
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- Metabolites (2218-1989), 2022, v. 12, n. 1, p. 43, doi. 10.3390/metabo12010043
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Impact of explicit area scaling on kinetic models involving multiple compartments.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-020-03913-8
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Quantitative and integrative analysis of paracrine hepatocyte activation by nonparenchymal cells upon lipopolysaccharide induction.
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- FEBS Journal, 2017, v. 284, n. 5, p. 796, doi. 10.1111/febs.14022
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PKC-mediated inhibitory feedback of the cholecystokinin 1 receptor controls the shape of oscillatory Ca<sup>2+</sup> signals.
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- FEBS Journal, 2015, v. 282, n. 11, p. 2187, doi. 10.1111/febs.13267
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Introduction.
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- FEBS Journal, 2012, v. 279, n. 18, p. 3289, doi. 10.1111/j.1742-4658.2012.08724.x
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Role of phosphate in the central metabolism of two lactic acid bacteria - a comparative systems biology approach.
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- FEBS Journal, 2012, v. 279, n. 7, p. 1274, doi. 10.1111/j.1742-4658.2012.08523.x
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Applications and trends in systems biology in biochemistry.
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- FEBS Journal, 2011, v. 278, n. 16, p. 2767, doi. 10.1111/j.1742-4658.2011.08217.x
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Combining theoretical analysis and experimental data generation reveals IRF9 as a crucial factor for accelerating interferon α-induced early antiviral signalling T. Maiwald et al. IRF9 accelerates IFNα signal transduction.
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- FEBS Journal, 2010, v. 277, n. 22, p. 4741, doi. 10.1111/j.1742-4658.2010.07880.x
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