Works by Kumeta, Hiroyuki

Results: 29

Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 6, p. 503, doi. 10.1038/nsmb1241

By:

Kobashigawa, Yoshihiro;
Sakai, Mieko;
Naito, Masato;
Yokochi, Masashi;
Kumeta, Hiroyuki;
Makino, Yoshinori;
Ogura, Kenji;
Tanaka, Shinya;
Inagaki, Fuyuhiko

Publication type:

Article

Application of Benchtop NMR for Metabolomics Study Using Feces of Mice with DSS-Induced Colitis.

Published in:

Metabolites (2218-1989), 2023, v. 13, n. 5, p. 611, doi. 10.3390/metabo13050611

By:

Song, Zihao;
Ohnishi, Yuki;
Osada, Seiji;
Gan, Li;
Jiang, Jiaxi;
Hu, Zhiyan;
Kumeta, Hiroyuki;
Kumaki, Yasuhiro;
Yokoi, Yuki;
Nakamura, Kiminori;
Ayabe, Tokiyoshi;
Yamauchi, Kazuo;
Aizawa, Tomoyasu

Publication type:

Article

The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1.

Published in:

Journal of Biomolecular NMR, 2014, v. 58, n. 3, p. 227, doi. 10.1007/s10858-014-9819-1

By:

Kumeta, Hiroyuki;
Sakakibara, Hiromi;
Enokizono, Yoshiaki;
Ogura, Kenji;
Horiuchi, Masataka;
Matsumoto, Misako;
Seya, Tsukasa;
Inagaki, Fuyuhiko

Publication type:

Article

NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner.

Published in:

Journal of Biomolecular NMR, 2013, v. 55, n. 2, p. 225, doi. 10.1007/s10858-012-9703-9

By:

Kumeta, Hiroyuki;
Ogura, Kenji;
Nishimiya, Yoshiyuki;
Miura, Ai;
Inagaki, Fuyuhiko;
Tsuda, Sakae

Publication type:

Article

Structure determination of proteins in 2H2O solution aided by a deuterium-decoupled 3D HCA(N)CO experiment.

Published in:

Journal of Biomolecular NMR, 2010, v. 47, n. 4, p. 243, doi. 10.1007/s10858-010-9431-y

By:

Ogura, Kenji;
Kumeta, Hiroyuki;
Inagaki, Fuyuhiko

Publication type:

Article

The NMR structure of the autophagy-related protein Atg8.

Published in:

Journal of Biomolecular NMR, 2010, v. 47, n. 3, p. 237, doi. 10.1007/s10858-010-9420-1

By:

Kumeta, Hiroyuki;
Watanabe, Masahiro;
Nakatogawa, Hitoshi;
Yamaguchi, Masaya;
Ogura, Kenji;
Adachi, Wakana;
Fujioka, Yuko;
Noda, Nobuo;
Ohsumi, Yoshinori;
Inagaki, Fuyuhiko

Publication type:

Article

PCS-based structure determination of protein–protein complexes.

Published in:

Journal of Biomolecular NMR, 2010, v. 46, n. 4, p. 271, doi. 10.1007/s10858-010-9401-4

By:

Saio, Tomohide;
Yokochi, Masashi;
Kumeta, Hiroyuki;
Inagaki, Fuyuhiko

Publication type:

Article

The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum.

Published in:

Journal of Biomolecular NMR, 2010, v. 46, n. 3, p. 251, doi. 10.1007/s10858-010-9399-7

By:

Kumeta, Hiroyuki;
Miwa, Noriko;
Ogura, Kenji;
Kai, Yuko;
Mizukoshi, Toshimi;
Shimba, Nobuhisa;
Suzuki, Ei-ichiro;
Inagaki, Fuyuhiko

Publication type:

Article

The NMR structure of the TC10- and Cdc42-interacting domain of CIP4.

Published in:

Journal of Biomolecular NMR, 2009, v. 44, n. 2, p. 113, doi. 10.1007/s10858-009-9317-z

By:

Kobashigawa, Yoshihiro;
Kumeta, Hiroyuki;
Kanoh, Daisuke;
Inagaki, Fuyuhiko

Publication type:

Article

Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method.

Published in:

Journal of Biomolecular NMR, 2009, v. 43, n. 3, p. 145, doi. 10.1007/s10858-008-9296-5

By:

Kobashigawa, Yoshihiro;
Kumeta, Hiroyuki;
Ogura, Kenji;
Inagaki, Fuyuhiko

Publication type:

Article

The NMR structure of the NIPP1 FHA domain.

Published in:

2008

By:

Kumeta, Hiroyuki;
Ogura, Kenji;
Adachi, Souichirou;
Fujioka, Yuko;
Tanuma, Nobuhiro;
Kikuchi, Kunimi;
Inagaki, Fuyuhiko

Publication type:

Correction Notice

The NMR structure of the NIPP1 FHA domain.

Published in:

Journal of Biomolecular NMR, 2008, v. 40, n. 3, p. 219, doi. 10.1007/s10858-008-9222-x

By:

Kumeta, Hiroyuki;
Ogura, Kenji;
Adachi, Souichirou;
Fujioka, Yuko;
Tanuma, Kiminobu;
Kikuchi, Kunimi;
Inagaki, Fuyuhiko

Publication type:

Article

The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.

Published in:

Journal of Biomolecular NMR, 2007, v. 38, n. 2, p. 161, doi. 10.1007/s10858-007-9155-9

By:

Kumeta, Hiroyuki;
Ogura, Kenji;
Asayama, Munehiko;
Katoh, Shizue;
Katoh, Etsuko;
Teshima, Keizo;
Inagaki, Fuyuhiko

Publication type:

Article

Letter to the Editor: Assignments of 1H, 13C, and 15N resonances of human lysozyme at 4 °C.

Published in:

Journal of Biomolecular NMR, 2002, v. 22, n. 2, p. 183, doi. 10.1023/A:1014202921909

By:

Kumeta, Hiroyuki;
Kobashigawa, Yoshihiro;
Miura, Kazunori;
Nishimiya, Yoshiyuki;
Oka, Chitoshi;
Nemoto, Nobuaki;
Miura, Ai;
Nitta, Katsutoshi;
Tsuda, Sakae

Publication type:

Article

Biophysical characterization of drug-resistant mutants of fibroblast growth factor receptor 1.

Published in:

Genes to Cells, 2016, v. 21, n. 10, p. 1049, doi. 10.1111/gtc.12405

By:

Yoza, Kaito;
Himeno, Rika;
Amano, Shinjiro;
Kobashigawa, Yoshihiro;
Amemiya, Shun;
Fukuda, Natsuki;
Kumeta, Hiroyuki;
Morioka, Hiroshi;
Inagaki, Fuyuhiko

Publication type:

Article

Nuclear magnetic resonance analysis of the conformational state of cancer mutant of fibroblast growth factor receptor 1 tyrosine kinase domain.

Published in:

Genes to Cells, 2016, v. 21, n. 4, p. 350, doi. 10.1111/gtc.12345

By:

Kobashigawa, Yoshihiro;
Amano, Shinjiro;
Yoza, Kaito;
Himeno, Rika;
Amemiya, Shun;
Morioka, Hiroshi;
Yokogawa, Mariko;
Kumeta, Hiroyuki;
Schlessinger, Joseph;
Inagaki, Fuyuhiko

Publication type:

Article

Structural analysis of the mechanism of phosphorylation of a critical autoregulatory tyrosine residue in FGFR1 kinase domain.

Published in:

Genes to Cells, 2015, v. 20, n. 10, p. 860, doi. 10.1111/gtc.12277

By:

Kobashigawa, Yoshihiro;
Amano, Shinjiro;
Yokogawa, Mariko;
Kumeta, Hiroyuki;
Morioka, Hiroshi;
Inouye, Masayori;
Schlessinger, Joseph;
Inagaki, Fuyuhiko

Publication type:

Article

Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.

Published in:

Genes to Cells, 2012, v. 17, n. 3, p. 159, doi. 10.1111/j.1365-2443.2012.01580.x

By:

Ogura, Kenji;
Kumeta, Hiroyuki;
Takahasi, Kiyohiro;
Kobashigawa, Yoshihiro;
Yoshida, Ryosuke;
Itoh, Hiroyuki;
Yazawa, Michio;
Inagaki, Fuyuhiko

Publication type:

Article

Structural basis of target recognition by Atg8/LC3 during selective autophagy.

Published in:

Genes to Cells, 2008, v. 13, n. 12, p. 1211, doi. 10.1111/j.1365-2443.2008.01238.x

By:

Noda, Nobuo N.;
Kumeta, Hiroyuki;
Nakatogawa, Hitoshi;
Satoo, Kenji;
Adachi, Wakana;
Ishii, Junko;
Fujioka, Yuko;
Ohsumi, Yoshinori;
Inagaki, Fuyuhiko

Publication type:

Article

Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions.

Published in:

Scientific Reports, 2016, p. 22324, doi. 10.1038/srep22324

By:

Yokogawa, Mariko;
Tsushima, Takashi;
Noda, Nobuo N.;
Kumeta, Hiroyuki;
Enokizono, Yoshiaki;
Yamashita, Kazuo;
Standley, Daron M.;
Takeuchi, Osamu;
Akira, Shizuo;
Inagaki, Fuyuhiko

Publication type:

Article

Ligand-driven conformational changes of MurD visualized by paramagnetic NMR.

Published in:

Scientific Reports, 2015, p. 16685, doi. 10.1038/srep16685

By:

Saio, Tomohide;
Ogura, Kenji;
Kumeta, Hiroyuki;
Kobashigawa, Yoshihiro;
Shimizu, Kazumi;
Yokochi, Masashi;
Inagaki, Fuyuhiko;
Kodama, Kota;
Yamaguchi, Hiroto;
Tsujishita, Hideki

Publication type:

Article

Structural and Stability Analysis of GRP Family Allergens Pru p 7 and Cry j 7, Which Cause Pollen and Food Allergy Syndrome.

Published in:

Biomolecules (2218-273X), 2025, v. 15, n. 2, p. 232, doi. 10.3390/biom15020232

By:

Zheng, Jingkang;
Kumeta, Hiroyuki;
Kumaki, Yasuhiro;
Iizuka, Tomona;
Yoshikawa, Ichiho;
Hanaoka, Ami;
Aizawa, Tomoyasu

Publication type:

Article

Metabolomics of Duodenal Juice for Biliary Tract Cancer Diagnosis.

Published in:

Cancers, 2023, v. 15, n. 17, p. 4370, doi. 10.3390/cancers15174370

By:

Kishi, Kazuma;
Kuwatani, Masaki;
Ohnishi, Yuki;
Kumaki, Yasuhiro;
Kumeta, Hiroyuki;
Hirata, Hajime;
Takishin, Yunosuke;
Furukawa, Ryutaro;
Nagai, Kosuke;
Yonemura, Hiroki;
Nozawa, Shunichiro;
Sugiura, Ryo;
Kawakubo, Kazumichi;
Aizawa, Tomoyasu;
Sakamoto, Naoya

Publication type:

Article

NMR Structure of the Heterodimer of Bem1 and Cdc24 PB1 Domains from Saccharomyces Cerevisiae.

Published in:

Journal of Biochemistry, 2009, v. 146, n. 3, p. 317, doi. 10.1093/jb/mvp075

By:

Ogura, Kenji;
Tandai, Tsubasa;
Yoshinaga, Sosuke;
Kobashigawa, Yoshihiro;
Kumeta, Hiroyuki;
Ito, Takashi;
Sumimoto, Hideki;
Inagaki, Fuyuhiko

Publication type:

Article

The Cooperative Role of OsCnfU-1A Domain I and Domain II in the Iron–Sulphur Cluster Transfer Process as Revealed by NMR.

Published in:

Journal of Biochemistry, 2007, v. 142, n. 1, p. 113, doi. 10.1093/jb/mvm120

By:

Saio, Tomohide;
Kumeta, Hiroyuki;
Ogura, Kenji;
Yokochi, Masashi;
Asayama, Munehiko;
Katoh, Shizue;
Katoh, Etsuko;
Teshima, Keizo;
Inagaki, Fuyuhiko

Publication type:

Article

Practical applications of hydrostatic pressure to refold proteins from inclusion bodies for NMR structural studies.

Published in:

PEDS: Protein Engineering, Design & Selection, 2013, v. 26, n. 6, p. 409, doi. 10.1093/protein/gzt012

By:

Ogura, Kenji;
Kobashigawa, Yoshihiro;
Saio, Tomohide;
Kumeta, Hiroyuki;
Torikai, Shinnosuke;
Inagaki, Fuyuhiko

Publication type:

Article

Production of Single-Chain Fv Antibodies Specific for GA-Pyridine, an Advanced Glycation End-Product (AGE), with Reduced Inter-Domain Motion.

Published in:

Molecules, 2017, v. 22, n. 10, p. 1695, doi. 10.3390/molecules22101695

By:

Natsuki Fukuda;
Kentaro Noi;
Lidong Weng;
Yoshihiro Kobashigawa;
Hiromi Miyazaki;
Yukari Wakeyama;
Michiyo Takaki;
Yusuke Nakahara;
Yuka Tatsuno;
Makiyo Uchida-Kamekura;
Yoshiaki Suwa;
Takashi Sato;
Naoki Ichikawa-Tomikawa;
Motoyoshi Nomizu;
Yukio Fujiwara;
Fumina Ohsaka;
Takashi Saito;
Katsumi Maenaka;
Hiroyuki Kumeta;
Shoko Shinya

Publication type:

Article

Exploring the In situ pairing of human galectins toward synthetic O-mannosylated core M1 glycopeptides of α-dystroglycan.

Published in:

Scientific Reports, 2022, v. 12, p. 1, doi. 10.1038/s41598-022-22758-0

By:

Villones Jr., Lareno L.;
Ludwig, Anna-Kristin;
Kumeta, Hiroyuki;
Kikuchi, Seiya;
Ochi, Rika;
Aizawa, Tomoyasu;
Nishimura, Shin-Ichiro;
Gabius, Hans-Joachim;
Hinou, Hiroshi

Publication type:

Article

The structure of Atg4B–LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.

Published in:

EMBO Journal, 2009, v. 28, n. 9, p. 1341, doi. 10.1038/emboj.2009.80

By:

Satoo, Kenji;
Noda, Nobuo N.;
Kumeta, Hiroyuki;
Fujioka, Yuko;
Mizushima, Noboru;
Ohsumi, Yoshinori;
Inagaki, Fuyuhiko

Publication type:

Article

Works by Kumeta, Hiroyuki

Structural basis for the transforming activity of human cancer-related signaling adaptor protein CRK.

Application of Benchtop NMR for Metabolomics Study Using Feces of Mice with DSS-Induced Colitis.

The N-terminal domain of TIR domain-containing adaptor molecule-1, TICAM-1.

NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner.

Structure determination of proteins in <sup>2</sup>H<sub>2</sub>O solution aided by a deuterium-decoupled 3D HCA(N)CO experiment.

The NMR structure of the autophagy-related protein Atg8.

PCS-based structure determination of protein–protein complexes.

The NMR structure of protein-glutaminase from Chryseobacterium proteolyticum.

The NMR structure of the TC10- and Cdc42-interacting domain of CIP4.

Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method.

The NMR structure of the NIPP1 FHA domain.

The NMR structure of the NIPP1 FHA domain.

The NMR structure of the domain II of a chloroplastic NifU-like protein OsNifU1A.

Letter to the Editor: Assignments of <sup>1</sup>H, <sup>13</sup>C, and <sup>15</sup>N resonances of human lysozyme at 4 °C.

Biophysical characterization of drug-resistant mutants of fibroblast growth factor receptor 1.

Nuclear magnetic resonance analysis of the conformational state of cancer mutant of fibroblast growth factor receptor 1 tyrosine kinase domain.

Structural analysis of the mechanism of phosphorylation of a critical autoregulatory tyrosine residue in FGFR1 kinase domain.

Solution structures of yeast Saccharomyces cerevisiae calmodulin in calcium- and target peptide-bound states reveal similarities and differences to vertebrate calmodulin.

Structural basis of target recognition by Atg8/LC3 during selective autophagy.

Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions.

Ligand-driven conformational changes of MurD visualized by paramagnetic NMR.

Structural and Stability Analysis of GRP Family Allergens Pru p 7 and Cry j 7, Which Cause Pollen and Food Allergy Syndrome.

Metabolomics of Duodenal Juice for Biliary Tract Cancer Diagnosis.

NMR Structure of the Heterodimer of Bem1 and Cdc24 PB1 Domains from Saccharomyces Cerevisiae.

The Cooperative Role of OsCnfU-1A Domain I and Domain II in the Iron–Sulphur Cluster Transfer Process as Revealed by NMR.

Practical applications of hydrostatic pressure to refold proteins from inclusion bodies for NMR structural studies.

Production of Single-Chain Fv Antibodies Specific for GA-Pyridine, an Advanced Glycation End-Product (AGE), with Reduced Inter-Domain Motion.

Exploring the In situ pairing of human galectins toward synthetic O-mannosylated core M1 glycopeptides of α-dystroglycan.

The structure of Atg4B–LC3 complex reveals the mechanism of LC3 processing and delipidation during autophagy.