Works by Kumar, Sujai

Results: 21

A high-coverage draft genome of the mycalesine butterfly Bicyclus anynana.

Published in:

GigaScience, 2017, v. 6, n. 7, p. 1, doi. 10.1093/gigascience/gix035

By:

Nowell, Reuben W.;
Elsworth, Ben;
Oostra, Vicencio;
Zwaan, Bas J.;
Wheat, Christopher W.;
Saastamoinen, Marjo;
Saccheri, Ilik J.;
van't Hof, Arjen E.;
Wasik, Bethany R.;
Connahs, Heidi;
Aslam, Muhammad L.;
Kumar, Sujai;
Challis, Richard J.;
Monteiro, Antónia;
Brakefield, Paul M.;
Blaxter, Mark

Publication type:

Article

959 Nematode Genomes: a semantic wiki for coordinating sequencing projects.

Published in:

Nucleic Acids Research, 2012, p. D1295, doi. 10.1093/nar/gkr826

By:

Kumar, Sujai;
Schiffer, Philipp H.;
Blaxter, Mark

Publication type:

Article

Let SMIL be your umbrella: Software tools for transcribing, coding, and presenting digital video in behavioral research.

Published in:

Behavior Research Methods, 2005, v. 37, n. 2, p. 359, doi. 10.3758/BF03192704

By:

Kumar, Sujai;
Miller, Kevin

Publication type:

Article

Phylogenomics and Analysis of Shared Genes Suggest a Single Transition to Mutualism in Wolbachia of Nematodes.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 9, p. 1668, doi. 10.1093/gbe/evt125

By:

Comandatore, Francesco;
Sassera, Davide;
Montagna, Matteo;
Kumar, Sujai;
Koutsovoulos, Georgios;
Thomas, Graham;
Repton, Charlotte;
Babayan, Simon A.;
Gray, Nick;
Cordaux, Richard;
Darby, Alistair;
Makepeace, Benjamin;
Blaxter, Mark

Publication type:

Article

Genomes on a Tree (GoaT): A centralized resource for eukaryotic genome sequencing initiatives.

Published in:

Biodiversity Information Science & Standards, 2021, p. 1, doi. 10.3897/biss.5.74138

By:

Sotero-Caio, Cibele Gomes;
Challis, Richard;
Kumar, Sujai;
Blaxter, Mark

Publication type:

Article

The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-923

By:

Schiffer, Philipp H.;
Kroiher, Michael;
Kraus, Christopher;
Koutsovoulos, Georgios D.;
Kumar, Sujai;
Camps, Julia I. R.;
Nsah, Ndifon A.;
Stappert, Dominik;
Morris, Krystalynne;
Heger, Peter;
Altmüller, Janine;
Frommolt, Peter;
Nürnberg, Peter;
Thomas, W. Kelley;
Blaxter, Mark L.;
Schierenberg, Einhard

Publication type:

Article

Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity.

Published in:

Nature Communications, 2015, v. 6, n. 10, p. 8772, doi. 10.1038/ncomms9772

By:

Buck, Amy H.;
Coakley, Gillian;
Simbari, Fabio;
McSorley, Henry J.;
Quintana, Juan F.;
Le Bihan, Thierry;
Kumar, Sujai;
Abreu-Goodger, Cei;
Lear, Marissa;
Harcus, Yvonne;
Ceroni, Alessandro;
Babayan, Simon A.;
Blaxter, Mark;
Ivens, Alasdair;
Maizels, Rick M.

Publication type:

Article

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity.

Published in:

Nature Communications, 2014, v. 5, n. 11, p. 5488, doi. 10.1038/ncomms6488

By:

Buck, Amy H.;
Coakley, Gillian;
Simbari, Fabio;
McSorley, Henry J.;
Quintana, Juan F.;
Le Bihan, Thierry;
Kumar, Sujai;
Abreu-Goodger, Cei;
Lear, Marissa;
Harcus, Yvonne;
Ceroni, Alessandro;
Babayan, Simon A.;
Blaxter, Mark;
Ivens, Alasdair;
Maizels, Rick M.

Publication type:

Article

Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus.

Published in:

PLoS Biology, 2017, v. 15, n. 7, p. 1, doi. 10.1371/journal.pbio.2002266

By:

Yoshida, Yuki;
Koutsovoulos, Georgios;
Laetsch, Dominik R.;
Stevens, Lewis;
Kumar, Sujai;
Horikawa, Daiki D.;
Ishino, Kyoko;
Komine, Shiori;
Kunieda, Takekazu;
Tomita, Masaru;
Blaxter, Mark;
Arakawa, Kazuharu

Publication type:

Article

Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild.

Published in:

Evolution Letters, 2020, v. 4, n. 1, p. 19, doi. 10.1002/evl3.148

By:

Pascoal, Sonia;
Risse, Judith E.;
Zhang, Xiao;
Blaxter, Mark;
Cezard, Timothee;
Challis, Richard J.;
Gharbi, Karim;
Hunt, John;
Kumar, Sujai;
Langan, Emma;
Liu, Xuan;
Rayner, Jack G.;
Ritchie, Michael G.;
Snoek, Basten L.;
Trivedi, Urmi;
Bailey, Nathan W.

Publication type:

Article

Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus.

Published in:

Molecular Ecology, 2010, v. 19, p. 240, doi. 10.1111/j.1365-294X.2009.04475.x

By:

FERGUSON, LAURA;
SIU FAI LEE;
CHAMBERLAIN, NICOLA;
NADEAU, NICOLA;
JORON, MATHIEU;
BAXTER, SIMON;
WILKINSON, PAUL;
PAPANICOLAOU, ALEXIE;
KUMAR, SUJAI;
THUAN-JIN KEE;
CLARK, RICHARD;
DAVIDSON, CLAIRE;
GLITHERO, REBECCA;
BEASLEY, HELEN;
VOGEL, HEIKO;
FFRENCH-CONSTANT, RICHARD;
JIGGINS, CHRIS

Publication type:

Article

RNA–RNA interactions between respiratory syncytial virus and miR-26 and miR-27 are associated with regulation of cell cycle and antiviral immunity.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 9, p. 4872, doi. 10.1093/nar/gkae116

By:

Ressel, Sarah;
Kumar, Sujai;
Bermúdez-Barrientos, Jose Roberto;
Gordon, Katrina;
Lane, Julia;
Wu, Jin;
Abreu-Goodger, Cei;
Schwarze, Jürgen;
Buck, Amy H

Publication type:

Article

Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 7, p. 3594, doi. 10.1093/nar/gkz142

By:

Chow, Franklin Wang-Ngai;
Koutsovoulos, Georgios;
Ovando-Vázquez, Cesaré;
Neophytou, Kyriaki;
Bermúdez-Barrientos, Jose R;
Laetsch, Dominik R;
Robertson, Elaine;
Kumar, Sujai;
Claycomb, Julie M;
Blaxter, Mark;
Abreu-Goodger, Cei;
Buck, Amy H

Publication type:

Article

Comparative analysis of small RNAs released by the filarial nematode Litomosoides sigmodontis in vitro and in vivo.

Published in:

PLoS Neglected Tropical Diseases, 2019, v. 13, n. 11, p. 1, doi. 10.1371/journal.pntd.0007811

By:

Quintana, Juan F.;
Kumar, Sujai;
Ivens, Alasdair;
Chow, Franklin W. N.;
Hoy, Anna M.;
Fulton, Alison;
Dickinson, Paul;
Martin, Coralie;
Taylor, Matthew;
Babayan, Simon A.;
Buck, Amy H.

Publication type:

Article

GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species.

Published in:

Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax039

By:

Challis, Richard J.;
Kumar, Sujai;
Stevens, Lewis;
Blaxter, Mark

Publication type:

Article

Self-Organizing Traffic at a Malfunctioning Intersection.

Published in:

Journal of Artificial Societies & Social Simulation, 2006, v. 9, n. 4, p. 3

By:

Kumar, Sujai;
Mitra, Sugata

Publication type:

Article

Sexually dimorphic gene expression and transcriptome evolution provide mixed evidence for a fast‐Z effect in Heliconius.

Published in:

Journal of Evolutionary Biology, 2019, v. 32, n. 3, p. 194, doi. 10.1111/jeb.13410

By:

Pinharanda, Ana;
Rousselle, Marjolaine;
Martin, Simon H.;
Hanly, Joe J.;
Davey, John W.;
Kumar, Sujai;
Galtier, Nicolas;
Jiggins, Chris D.

Publication type:

Article

Erratum: Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity.

Published in:

Scientific Reports, 2015, p. 8772, doi. 10.1038/ncomms9772

By:

Buck, Amy H.;
Coakley, Gillian;
Simbari, Fabio;
McSorley, Henry J.;
Quintana, Juan F.;
Le Bihan, Thierry;
Kumar, Sujai;
Abreu-Goodger, Cei;
Lear, Marissa;
Harcus, Yvonne;
Ceroni, Alessandro;
Babayan, Simon A.;
Blaxter, Mark;
Ivens, Alasdair;
Maizels, Rick M.

Publication type:

Article

Comparing de novo assemblers for 454 transcriptome data.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-571

By:

Kumar, Sujai;
Blaxter, Mark L

Publication type:

Article

Comparing de novo assemblers for 454 transcriptome data.

Published in:

BMC Genomics, 2010, v. 11, p. 571, doi. 10.1186/1471-2164-11-571

By:

Kumar, Sujai;
Blaxter, Mark L.

Publication type:

Article

Experimental evolution, genetic analysis and genome re-sequencing reveal the mutation conferring artemisinin resistance in an isogeniclineage of malaria parasites.

Published in:

BMC Genomics, 2010, v. 11, p. 499, doi. 10.1186/1471-2164-11-499

By:

Hunt, Paul;
Martinelli, Axel;
Modrzynska, Katarzyna;
Borges, Sofia;
Creasey, Alison;
Rodrigues, Louise;
Beraldi, Dario;
Loewe, Laurence;
Fawcett, Richard;
Kumar, Sujai;
Thomson, Marian;
Trivedi, Urmi;
Otto, Thomas D.;
Pain, Arnab;
Blaxter, Mark;
Cravo, Pedro

Publication type:

Article