Works by Kuhl, Heiner

Results: 43

A candidate sex determination locus in amphibians which evolved by structural variation between X- and Y-chromosomes.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49025-2

By:

Kuhl, Heiner;
Tan, Wen Hui;
Klopp, Christophe;
Kleiner, Wibke;
Koyun, Baturalp;
Ciorpac, Mitica;
Feron, Romain;
Knytl, Martin;
Kloas, Werner;
Schartl, Manfred;
Winkler, Christoph;
Stöck, Matthias

Publication type:

Article

Using the canary genome to decipher the evolution of hormone-sensitive gene regulation in seasonal singing birds.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 146, doi. 10.1186/s13059-014-0578-9

By:

Frankl-Vilches, Carolina;
Kuhl, Heiner;
Werber, Martin;
Klages, Sven;
Kerick, Martin;
Bakker, Antje;
de Oliveira, Edivaldo H. C.;
Reusch, Christina;
Capuano, Floriana;
Vowinckel, Jakob;
Leitner, Stefan;
Ralser, Markus;
Timmermann, Bernd;
Gahr, Manfred

Publication type:

Article

The Cat Sper channel controls chemosensation in sea urchin sperm.

Published in:

EMBO Journal, 2015, v. 34, n. 3, p. 379, doi. 10.15252/embj.201489376

By:

Seifert, Reinhard;
Flick, Melanie;
Bönigk, Wolfgang;
Alvarez, Luis;
Trötschel, Christian;
Poetsch, Ansgar;
Müller, Astrid;
Goodwin, Normann;
Pelzer, Patric;
Kashikar, Nachiket D;
Kremmer, Elisabeth;
Jikeli, Jan;
Timmermann, Bernd;
Kuhl, Heiner;
Fridman, Dmitry;
Windler, Florian;
Kaupp, U Benjamin;
Strünker, Timo

Publication type:

Article

Multi-genome comparisons reveal gain-and-loss evolution of anti-Mullerian hormone receptor type 2 as a candidate master sex-determining gene in Percidae.

Published in:

BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-01935-9

By:

Kuhl, Heiner;
Euclide, Peter T.;
Klopp, Christophe;
Cabau, Cédric;
Zahm, Margot;
Lopez-Roques, Céline;
Iampietro, Carole;
Kuchly, Claire;
Donnadieu, Cécile;
Feron, Romain;
Parrinello, Hugues;
Poncet, Charles;
Jaffrelo, Lydia;
Confolent, Carole;
Wen, Ming;
Herpin, Amaury;
Jouanno, Elodie;
Bestin, Anastasia;
Haffray, Pierrick;
Morvezen, Romain

Publication type:

Article

Combined ultra-low input mRNA and whole-genome sequencing of human embryonic stem cells.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2025-z

By:

Mertes, Florian;
Lichtner, Björn;
Kuhl, Heiner;
Blattner, Mirjam;
Otte, Jörg;
Wruck, Wasco;
Timmermann, Bernd;
Lehrach, Hans;
Adjaye, James

Publication type:

Article

Maternal 3'UTRs: from egg to onset of zygotic transcription in Atlantic cod.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 443, doi. 10.1186/1471-2164-13-443

By:

Kleppe, Lene;
Edvardsen, Rolf B.;
Kuhl, Heiner;
Malde, Ketil;
Furmanek, Tomasz;
Drivenes, Øyvind;
Reinhardt, Richard;
Taranger, Geir L.;
Wargelius, Anna

Publication type:

Article

Genomic characterization of the European sea bass Dicentrarchus labrax reveals the presence of a novel uncoupling protein (UCP) gene family member in the teleost fish lineage.

Published in:

BMC Evolutionary Biology, 2012, v. 12, n. 1, p. 62, doi. 10.1186/1471-2148-12-62

By:

Tine, Mbaye;
Kuhl, Heiner;
Jastroch, Martin;
Reinhardt, Richard

Publication type:

Article

Natural history of SLC11 genes in vertebrates: tales from the fish world.

Published in:

BMC Evolutionary Biology, 2011, v. 11, n. 1, p. 106, doi. 10.1186/1471-2148-11-106

By:

Neves, João V.;
Wilson, Jonathan M.;
Kuhl, Heiner;
Reinhardt, Richard;
Castro, L. Filipe C.;
Rodrigues, Pedro N. S.

Publication type:

Article

The immune system of sturgeons and paddlefish (Acipenseriformes): a review with new data from a chromosome‐scale sturgeon genome.

Published in:

Reviews in Aquaculture, 2021, v. 13, n. 3, p. 1709, doi. 10.1111/raq.12542

By:

Höhne, Christin;
Prokopov, Dmitry;
Kuhl, Heiner;
Du, Kang;
Klopp, Christophe;
Wuertz, Sven;
Trifonov, Vladimir;
Stöck, Matthias

Publication type:

Article

DNAH5 Mutations Are a Common Cause of Primary Ciliary Dyskinesia with Outer Dynein Arm Defects.

Published in:

American Journal of Respiratory & Critical Care Medicine, 2006, v. 174, n. 2, p. 120, doi. 10.1164/rccm.200601-084OC

By:

Hornef, Nada;
Olbrich, Heike;
Horvath, Judit;
Zariwala, Maimoona A.;
Fliegauf, Manfred;
Loges, Niki Tomas;
Wildhaber, Johannes;
Noone, Peadar G.;
Kennedy, Marcus;
Antonarakis, Stylianos E.;
Blouin, Jean-Louis;
Bartoloni, Lucia;
Nüsslein, Thomas;
Ahrens, Peter;
Griese, Matthias;
Kuhl, Heiner;
Sudbrak, Ralf;
Knowles, Michael R.;
Reinhardt, Richard;
Omran, Heymut

Publication type:

Article

A Comparative BAC map for the gilthead sea bream (Sparus aurata L.)

Published in:

2011

By:

Kuhl, Heiner;
Sarropoulou, Elena;
Tine, Mbaye;
Kotoulas, Georgios;
Magoulas, Antonios;
Reinhardt, Richard

Publication type:

Journal Article

A Comparative BAC Map for the Gilthead Sea Bream (Sparus aurata L.).

Published in:

Journal of Biomedicine & Biotechnology, 2011, p. 1, doi. 10.1155/2011/329025

By:

Kuhl, Heiner;
Sarropoulou, Elena;
Tine, Mbaye;
Kotoulas, Georgios;
Magoulas, Antonios;
Reinhardt, Richard

Publication type:

Article

An Unbiased Molecular Approach Using 3′-UTRs Resolves the Avian Family-Level Tree of Life.

Published in:

Molecular Biology & Evolution, 2021, v. 38, n. 1, p. 108, doi. 10.1093/molbev/msaa191

By:

Kuhl, Heiner;
Frankl-Vilches, Carolina;
Bakker, Antje;
Mayr, Gerald;
Nikolaus, Gerhard;
Boerno, Stefan T;
Klages, Sven;
Timmermann, Bernd;
Gahr, Manfred

Publication type:

Article

Identification and characterisation of a novel immune-type receptor (NITR) gene cluster in the European sea bass, Dicentrarchus labrax, reveals recurrent gene expansion and diversification by positive selection.

Published in:

Immunogenetics, 2009, v. 61, n. 11/12, p. 773, doi. 10.1007/s00251-009-0398-3

By:

Ferraresso, Serena;
Kuhl, Heiner;
Milan, Massimo;
Ritchie, David W.;
Secombes, Christopher J.;
Reinhardt, Richard;
Bargelloni, Luca

Publication type:

Article

Genes acting in synapses and neuron projections are early targets of selection during urban colonization.

Published in:

Molecular Ecology, 2020, v. 29, n. 18, p. 3403, doi. 10.1111/mec.15451

By:

Mueller, Jakob C.;
Carrete, Martina;
Boerno, Stefan;
Kuhl, Heiner;
Tella, José L.;
Kempenaers, Bart

Publication type:

Article

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Published in:

2016

By:

Vij, Shubha;
Kuhl, Heiner;
Kuznetsova, Inna S.;
Komissarov, Aleksey;
Yurchenko, Andrey A.;
Van Heusden, Peter;
Singh, Siddharth;
Thevasagayam, Natascha M.;
Prakki, Sai Rama Sridatta;
Purushothaman, Kathiresan;
Saju, Jolly M.;
Jiang, Junhui;
Mbandi, Stanley Kimbung;
Jonas, Mario;
Hin Yan Tong, Amy;
Mwangi, Sarah;
Lau, Doreen;
Ngoh, Si Yan;
Liew, Woei Chang;
Shen, Xueyan

Publication type:

Correction Notice

Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus: polymorphisms, sex-biased expression and selection signals.

Published in:

Molecular Ecology Resources, 2016, v. 16, n. 2, p. 549, doi. 10.1111/1755-0998.12450

By:

Mueller, Jakob C.;
Kuhl, Heiner;
Timmermann, Bernd;
Kempenaers, Bart

Publication type:

Article

The genome of Erwinia tasmaniensis strain Et1/99, a non-pathogenic bacterium in the genus Erwinia.

Published in:

Environmental Microbiology, 2008, v. 10, n. 9, p. 2211, doi. 10.1111/j.1462-2920.2008.01639.x

By:

Kube, Michael;
Migdoll, Alexander Michael;
Müller, Ines;
Kuhl, Heiner;
Beck, Alfred;
Reinhardt, Richard;
Geider, Klaus

Publication type:

Article

Whole genome analysis of the marine Bacteroidetes‘ Gramella forsetii’ reveals adaptations to degradation of polymeric organic matter.

Published in:

Environmental Microbiology, 2006, v. 8, n. 12, p. 2201, doi. 10.1111/j.1462-2920.2006.01152.x

By:

Bauer, Margarete;
Kube, Michael;
Teeling, Hanno;
Richter, Michael;
Lombardot, Thierry;
Allers, Elke;
Würdemann, Chris A.;
Quast, Christian;
Kuhl, Heiner;
Knaust, Florian;
Woebken, Dagmar;
Bischof, Kerstin;
Mussmann, Marc;
Choudhuri, Jomuna V.;
Meyer, Folker;
Reinhardt, Richard;
Amann, Rudolf I.;
Glöckner, Frank Oliver

Publication type:

Article

Evolution of MicroRNA Biogenesis Genes in the Sterlet (Acipenser ruthenus) and Other Polyploid Vertebrates.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 24, p. 9562, doi. 10.3390/ijms21249562

By:

Fofanov, Mikhail V.;
Prokopov, Dmitry Yu.;
Kuhl, Heiner;
Schartl, Manfred;
Trifonov, Vladimir A.

Publication type:

Article

Different Phylogenomic Approaches to Resolve the Evolutionary Relationships among Model Fish Species.

Published in:

Molecular Biology & Evolution, 2010, v. 27, n. 12, p. 2757, doi. 10.1093/molbev/msq165

By:

Negrisolo, Enrico;
Kuhl, Heiner;
Forcato, Claudio;
Vitulo, Nicola;
Reinhardt, Richard;
Patarnello, Tomaso;
Bargelloni, Luca

Publication type:

Article

Cloning, Tissue Expression Analysis, and Functional Characterization of Two Δ6-Desaturase Variants of Sea Bass ( Dicentrarchus labrax L.).

Published in:

Marine Biotechnology, 2011, v. 13, n. 1, p. 22, doi. 10.1007/s10126-010-9264-4

By:

Santigosa, Ester;
Geay, Florian;
Tonon, Thierry;
Delliou, Herve;
Kuhl, Heiner;
Reinhardt, Richard;
Corcos, Laurent;
Cahu, Chantal;
Zambonino-Infante, José;
Mazurais, David

Publication type:

Article

Genomic sequences and genetic differentiation at associated tandem repeat markers in growth hormone, somatolactin and insulin-like growth factor-1 genes of the sea bass, Dicentrarchus labrax.

Published in:

Aquatic Living Resources, 2010, v. 23, n. 3, p. 285, doi. 10.1051/alr/2010021

By:

Quéré, Nolwenn;
Guinand, Bruno;
Kuhl, Heiner;
Reinhardt, Richard;
Bonhomme, François;
Desmarais, Erick

Publication type:

Article

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation.

Published in:

Nature Communications, 2014, v. 5, n. 12, p. 5770, doi. 10.1038/ncomms6770

By:

Tine, Mbaye;
Kuhl, Heiner;
Gagnaire, Pierre-Alexandre;
Louro, Bruno;
Desmarais, Erick;
Martins, Rute S.T.;
Hecht, Jochen;
Knaust, Florian;
Belkhir, Khalid;
Klages, Sven;
Dieterich, Roland;
Stueber, Kurt;
Piferrer, Francesc;
Guinand, Bruno;
Bierne, Nicolas;
Volckaert, Filip A. M.;
Bargelloni, Luca;
Power, Deborah M.;
Bonhomme, François;
Canario, Adelino V. M.

Publication type:

Article

Mandarin fish (Sinipercidae) genomes provide insights into innate predatory feeding.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-1094-y

By:

He, Shan;
Li, Ling;
Lv, Li-Yuan;
Cai, Wen-Jing;
Dou, Ya-Qi;
Li, Jiao;
Tang, Shu-Lin;
Chen, Xu;
Zhang, Zhen;
Xu, Jing;
Zhang, Yan-Peng;
Yin, Zhan;
Wuertz, Sven;
Tao, Ya-Xiong;
Kuhl, Heiner;
Liang, Xu-Fang

Publication type:

Article

CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes.

Published in:

GigaScience, 2020, v. 9, n. 5, p. N.PAG, doi. 10.1093/gigascience/giaa034

By:

Kuhl, Heiner;
Li, Ling;
Wuertz, Sven;
Stöck, Matthias;
Liang, Xu-Fang;
Klopp, Christophe

Publication type:

Article

Diversity, Molecular Characterization and Expression of T Cell Receptor γ in a Teleost Fish, the Sea Bass (Dicentrarchus labrax, L).

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047957

By:

Buonocore, Francesco;
Castro, Rosario;
Randelli, Elisa;
Lefranc, Marie-Paule;
Six, Adrien;
Kuhl, Heiner;
Reinhardt, Richard;
Facchiano, Angelo;
Boudinot, Pierre;
Scapigliati, Giuseppe

Publication type:

Article

Gene-centromere mapping in meiotic gynogenetic European seabass.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3826-z

By:

Oral, Münevver;
Colléter, Julie;
Bekaert, Michaël;
Taggart, John B.;
Palaiokostas, Christos;
McAndrew, Brendan J.;
Vandeputte, Marc;
Chatain, Béatrice;
Kuhl, Heiner;
Reinhardt, Richard;
Peruzzi, Stefano;
Penman, David J.

Publication type:

Article

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Published in:

PLoS Genetics, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pgen.1005954

By:

Vij, Shubha;
Kuhl, Heiner;
Kuznetsova, Inna S.;
Komissarov, Aleksey;
Yurchenko, Andrey A.;
Van Heusden, Peter;
Singh, Siddharth;
Thevasagayam, Natascha M.;
Prakki, Sai Rama Sridatta;
Purushothaman, Kathiresan;
Saju, Jolly M.;
Jiang, Junhui;
Mbandi, Stanley Kimbung;
Jonas, Mario;
Hin Yan Tong, Amy;
Mwangi, Sarah;
Lau, Doreen;
Ngoh, Si Yan;
Liew, Woei Chang;
Shen, Xueyan

Publication type:

Article

Equilibrated evolution of the mixed auto-/allopolyploid haplotype-resolved genome of the invasive hexaploid Prussian carp.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31515-w

By:

Kuhl, Heiner;
Du, Kang;
Schartl, Manfred;
Kalous, Lukáš;
Stöck, Matthias;
Lamatsch, Dunja K.

Publication type:

Article

Author Correction: Equilibrated evolution of the mixed auto-/allopolyploid haplotype-resolved genome of the invasive hexaploid Prussian carp.

Published in:

2022

By:

Kuhl, Heiner;
Du, Kang;
Schartl, Manfred;
Kalous, Lukáš;
Stöck, Matthias;
Lamatsch, Dunja K.

Publication type:

Correction Notice

Equilibrated evolution of the mixed auto-/allopolyploid haplotype-resolved genome of the invasive hexaploid Prussian carp.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31515-w

By:

Kuhl, Heiner;
Du, Kang;
Schartl, Manfred;
Kalous, Lukáš;
Stöck, Matthias;
Lamatsch, Dunja K.

Publication type:

Article

Equilibrated evolution of the mixed auto-/allopolyploid haplotype-resolved genome of the invasive hexaploid Prussian carp.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31515-w

By:

Kuhl, Heiner;
Du, Kang;
Schartl, Manfred;
Kalous, Lukáš;
Stöck, Matthias;
Lamatsch, Dunja K.

Publication type:

Article

Multi-Tissue Transcriptomes Yield Information on High-Altitude Adaptation and Sex-Determination in Scutiger cf. sikimmensis.

Published in:

Genes, 2019, v. 10, n. 11, p. 873, doi. 10.3390/genes10110873

By:

Hofmann, Sylvia;
Kuhl, Heiner;
Baniya, Chitra Bahadur;
Stöck, Matthias

Publication type:

Article

Shedding Light on a Secretive Tertiary Urodelean Relict: Hynobiid Salamanders (Paradactylodon persicus s.l.) from Iran, Illuminated by Phylogeographic, Developmental, and Transcriptomic Data.

Published in:

Genes, 2019, v. 10, n. 4, p. 306, doi. 10.3390/genes10040306

By:

Stöck, Matthias;
Fakharzadeh, Fatemeh;
Kuhl, Heiner;
Rozenblut-Kościsty, Beata;
Leinweber, Sophie;
Patel, Riddhi;
Ebrahimi, Mehregan;
Voitel, Sebastian;
Schmidtler, Josef Friedrich;
Kami, Haji Gholi;
Ogielska, Maria;
Förster, Daniel W.

Publication type:

Article

Genome sequence of the chlorinated compound–respiring bacterium Dehalococcoides species strain CBDB1.

Published in:

Nature Biotechnology, 2005, v. 23, n. 10, p. 1269, doi. 10.1038/nbt1131

By:

Kube, Michael;
Beck, Alfred;
Zinder, Stephen H.;
Kuhl, Heiner;
Reinhardt, Richard;
Adrian, Lorenz

Publication type:

Article

Human Induced Pluripotent Stem Cells Harbor Homoplasmic and Heteroplasmic Mitochondrial DNA Mutations While Maintaining Human Embryonic Stem Cell-like Metabolic Reprogramming.

Published in:

Stem Cells, 2011, v. 29, n. 9, p. 1338, doi. 10.1002/stem.683

By:

Prigione, Alessandro;
Lichtner, Björn;
Kuhl, Heiner;
Struys, Eduard A.;
Wamelink, Mirjam;
Lehrach, Hans;
Ralser, Markus;
Timmermann, Bernd;
Adjaye, James

Publication type:

Article

Genome comparison of the epiphytic bacteriaErwinia billingiae and E. tasmaniensis with the pearpathogen E. pyrifoliae.

Published in:

BMC Genomics, 2010, v. 11, p. 393, doi. 10.1186/1471-2164-11-393

By:

Kube, Michael;
Migdoll, Alexander M.;
Gehring, Isabel;
Heitmann, Katja;
Mayer, Yvonne;
Kuhl, Heiner;
Knaust, Florian;
Geider, Klaus;
Reinhardt, Richard

Publication type:

Article

The European sea bass Dicentrarchus labraxgenome puzzle: comparative BAC-mapping andlow coverage shotgun sequencing.

Published in:

BMC Genomics, 2010, v. 11, p. 68, doi. 10.1186/1471-2164-11-68

By:

Kuhl, Heiner;
Beck, Alfred;
Wozniak, Grzegorz;
Canario, Adelino V. M.;
Volckaert, Filip A. M.;
Reinhardt, Richard

Publication type:

Article

The linear chromosome of the plant-pathogenic mycoplasma 'Candidatus Phytoplasma mali.'.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-306

By:

Kube, Michael;
Schneider, Bernd;
Kuhl, Heiner;
Dandekar, Thomas;
Heitmann, Katja;
Migdoll, Alexander M.;
Reinhardt, Richard;
Seemüller, Erich

Publication type:

Article

Genome‐wide analysis of European sea bass provides insights into the evolution and functions of single‐exon genes.

Published in:

Ecology & Evolution (20457758), 2021, v. 11, n. 11, p. 6546, doi. 10.1002/ece3.7507

By:

Tine, Mbaye;
Kuhl, Heiner;
Teske, Peter R.;
Reinhardt, Richard

Publication type:

Article

Diversification and coevolution of the ghrelin/growth hormone secretagogue receptor system in vertebrates.

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 8, p. 2516, doi. 10.1002/ece3.2057

By:

Tine, Mbaye;
Kuhl, Heiner;
Teske, Peter R.;
Tschöp, Matthias H.;
Jastroch, Martin

Publication type:

Article

TCRs with segment TRAV9‐2 or a CDR3 histidine are overrepresented among nickel‐specific CD4+ T cells.

Published in:

Allergy, 2020, v. 75, n. 10, p. 2574, doi. 10.1111/all.14322

By:

Aparicio‐Soto, Marina;
Riedel, Franziska;
Leddermann, Melanie;
Bacher, Petra;
Scheffold, Alexander;
Kuhl, Heiner;
Timmermann, Bernd;
Chudakov, Dmitriy M.;
Molin, Sonja;
Worm, Margitta;
Heine, Guido;
Thierse, Hermann‐Josef;
Luch, Andreas;
Siewert, Katherina

Publication type:

Article