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AutoFocus: a hierarchical framework to explore multi-omic disease associations spanning multiple scales of biomolecular interaction.
- Published in:
- Communications Biology, 2024, p. 1, doi. 10.1038/s42003-024-06724-2
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- Article
Associations of maternal type 1 diabetes with childhood adiposity and metabolic health in the offspring: a prospective cohort study.
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- Diabetologia, 2018, v. 61, n. 11, p. 2319, doi. 10.1007/s00125-018-4688-x
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- Article
Peptide serum markers in islet autoantibody-positive children.
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- Diabetologia, 2017, v. 60, n. 2, p. 287, doi. 10.1007/s00125-016-4150-x
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- Article
Lactation is associated with altered metabolomic signatures in women with gestational diabetes.
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- Diabetologia, 2016, v. 59, n. 10, p. 2193, doi. 10.1007/s00125-016-4055-8
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- Article
A strategy to find gene combinations that identify children who progress rapidly to type 1 diabetes after islet autoantibody seroconversion.
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- Acta Diabetologica, 2014, v. 51, n. 3, p. 403, doi. 10.1007/s00592-013-0526-2
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- Article
Improved Macro- and Micronutrient Supply for Favorable Growth and Metabolomic Profile with Standardized Parenteral Nutrition Solutions for Very Preterm Infants.
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- Nutrients, 2022, v. 14, n. 19, p. 3912, doi. 10.3390/nu14193912
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- Article
Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data.
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- BMC Systems Biology, 2011, v. 5, n. 1, p. 21, doi. 10.1186/1752-0509-5-21
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- Article
The dynamic range of the human metabolome revealed by challenges.
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- FASEB Journal, 2012, v. 26, n. 6, p. 2607, doi. 10.1096/fj.11-198093
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- Article
Bidirectional modulation of TCA cycle metabolites and anaplerosis by metformin and its combination with SGLT2i.
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- Cardiovascular Diabetology, 2024, v. 23, n. 1, p. 1, doi. 10.1186/s12933-024-02288-x
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- Article
Interplay of Metabolome and Gut Microbiome in Individuals With Major Depressive Disorder vs Control Individuals.
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- JAMA Psychiatry, 2023, v. 80, n. 6, p. 597, doi. 10.1001/jamapsychiatry.2023.0685
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- Article
Novel genetic associations with serum level metabolites identified by phenotype set enrichment analyses.
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- Human Molecular Genetics, 2014, v. 23, n. 21, p. 5847, doi. 10.1093/hmg/ddu301
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- Article
Metabolomics reveals effects of maternal smoking on endogenous metabolites from lipid metabolism in cord blood of newborns.
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- Metabolomics, 2016, v. 12, n. 4, p. 1, doi. 10.1007/s11306-016-0983-z
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- Article
Gender-specific pathway differences in the human serum metabolome.
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- Metabolomics, 2015, v. 11, n. 6, p. 1815, doi. 10.1007/s11306-015-0829-0
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- Article
Metabolite profiling reveals new insights into the regulation of serum urate in humans.
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- Metabolomics, 2014, v. 10, n. 1, p. 141, doi. 10.1007/s11306-013-0565-2
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- Article
A Systemic Inflammatory Signature Reflecting Cross Talk Between Innate and Adaptive Immunity Is Associated With Incident Polyneuropathy: KORA F4/FF4 Study.
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- 2018
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- Publication type:
- journal article
Seasonal Regulation of Metabolism: The Effect of Wintertime Fasting and Autumnal Fattening on Key Central Regulators of Metabolism and the Metabolic Profile of the Raccoon Dog (Nyctereutes Procyonoides).
- Published in:
- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 4965, doi. 10.3390/ijms22094965
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- Article
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
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- BMC Genomics, 2010, v. 11, p. 224, doi. 10.1186/1471-2164-11-224
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- Publication type:
- Article
On the hypothesis-free testing of metabolite ratios in genome-wide and metabolome-wide association studies.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 120, doi. 10.1186/1471-2105-13-120
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- Article
Odefy -- From discrete to continuous models.
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- BMC Bioinformatics, 2010, v. 11, p. 233, doi. 10.1186/1471-2105-11-233
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- Article
An atlas of genetic influences on human blood metabolites.
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- Nature Genetics, 2014, v. 46, n. 6, p. 543, doi. 10.1038/ng.2982
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- Article
Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.
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- Nature Genetics, 2013, v. 45, n. 2, p. 145, doi. 10.1038/ng.2500
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- Article
The Human Blood Metabolome-Transcriptome Interface.
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- PLoS Genetics, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.pgen.1005274
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- Article
Mining the Unknown: A Systems Approach to Metabolite Identification Combining Genetic and Metabolic Information.
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- PLoS Genetics, 2012, v. 8, n. 10, p. 1, doi. 10.1371/journal.pgen.1003005
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- Article
Discovery of Sexual Dimorphisms in Metabolic and Genetic Biomarkers.
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- PLoS Genetics, 2011, v. 7, n. 8, p. 1, doi. 10.1371/journal.pgen.1002215
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- Article
Genetic scores to stratify risk of developing multiple islet autoantibodies and type 1 diabetes: A prospective study in children.
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- 2018
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- Publication type:
- journal article
Variational autoencoders learn transferrable representations of metabolomics data.
- Published in:
- Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03579-3
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- Publication type:
- Article
The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05767-4
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- Publication type:
- Article
Software tools for single-cell tracking and quantification of cellular and molecular properties.
- Published in:
- Nature Biotechnology, 2016, v. 34, n. 7, p. 703, doi. 10.1038/nbt.3626
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- Publication type:
- Article
Characterization of missing values in untargeted MS-based metabolomics data and evaluation of missing data handling strategies.
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- Metabolomics, 2018, v. 14, n. 10, p. 1, doi. 10.1007/s11306-018-1420-2
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- Publication type:
- Article
Integrative metabolomics‐genomics approach reveals that pathways related to the metabolism of acylcarnitines and amines are new potential targets of Alzheimer's disease: Genome‐metabolome‐phenome: Towards an integrated molecular atlas for Alzheimer's disease
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- Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2020, v. 16, n. 11, p. 1, doi. 10.1002/alz.045610
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- Article
A network‐based, multi‐omics atlas for target identification and prioritization in Alzheimer's disease: Genome‐metabolome‐phenome: Towards an integrated molecular atlas for Alzheimer's disease.
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- Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2020, v. 16, n. 11, p. 1, doi. 10.1002/alz.045594
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- Article
A Panel of 6 Biomarkers Significantly Improves the Prediction of Type 2 Diabetes in the MONICA/KORA Study Population.
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- 2021
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- Publication type:
- journal article
maplet: an extensible R toolbox for modular and reproducible metabolomics pipelines.
- Published in:
- Bioinformatics, 2022, v. 38, n. 4, p. 1168, doi. 10.1093/bioinformatics/btab741
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- Article
SGI: automatic clinical subgroup identification in omics datasets.
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- Bioinformatics, 2022, v. 38, n. 2, p. 573, doi. 10.1093/bioinformatics/btab656
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- Publication type:
- Article
MoDentify : phenotype-driven module identification in metabolomics networks at different resolutions.
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- Bioinformatics, 2019, v. 35, n. 3, p. 532, doi. 10.1093/bioinformatics/bty650
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- Article
Phenotype-driven identification of modules in a hierarchical map of multifluid metabolic correlations.
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- NPJ Systems Biology & Applications, 2017, v. 3, n. 1, p. N.PAG, doi. 10.1038/s41540-017-0029-9
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- Publication type:
- Article
A multi-source data integration approach reveals novel associations between metabolites and renal outcomes in the German Chronic Kidney Disease study.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50346-2
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- Publication type:
- Article
A strategy to incorporate prior knowledge into correlation network cutoff selection.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-18675-3
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- Article
Body Fat Free Mass Is Associated with the Serum Metabolite Profile in a Population-Based Study.
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- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0040009
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- Article
Hierarchical Differentiation of Myeloid Progenitors Is Encoded in the Transcription Factor Network.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0022649
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- Publication type:
- Article
Multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
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- PLoS Pathogens, 2022, v. 18, n. 9, p. 1, doi. 10.1371/journal.ppat.1010819
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- Article
Urine-based multi-omic comparative analysis of COVID-19 and bacterial sepsis-induced ARDS.
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- Molecular Medicine, 2023, v. 29, n. 1, p. 1, doi. 10.1186/s10020-023-00609-6
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- Publication type:
- Article
Exploring the molecular basis of age-related disease comorbidities using a multi-omics graphical model.
- Published in:
- Scientific Reports, 2016, p. 37646, doi. 10.1038/srep37646
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- Publication type:
- Article
Metabolic Fingerprints of Circulating IGF-1 and the IGF-1/IGFBP-3 Ratio: A Multifluid Metabolomics Study.
- Published in:
- 2016
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- Publication type:
- journal article
Erratum to: A systems view of type 2 diabetes-associated metabolic perturbations in saliva, blood and urine at different timescales of glycaemic control.
- Published in:
- 2015
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- Publication type:
- Erratum
A systems view of type 2 diabetes-associated metabolic perturbations in saliva, blood and urine at different timescales of glycaemic control.
- Published in:
- Diabetologia, 2015, v. 58, n. 8, p. 1855, doi. 10.1007/s00125-015-3636-2
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- Publication type:
- Article
Erratum to: Feature ranking of type 1 diabetes susceptibility genes improves prediction of type 1 diabetes.
- Published in:
- 2015
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- Publication type:
- Erratum
Feature ranking of type 1 diabetes susceptibility genes improves prediction of type 1 diabetes.
- Published in:
- Diabetologia, 2014, v. 57, n. 12, p. 2521, doi. 10.1007/s00125-014-3362-1
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- Publication type:
- Article
Breast adipose tissue‐derived extracellular vesicles from obese women alter tumor cell metabolism.
- Published in:
- EMBO Reports, 2023, v. 24, n. 12, p. 1, doi. 10.15252/embr.202357339
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- Article
Plasma metabolomics profiling of 580 patients from an Early Detection Research Network prostate cancer cohort.
- Published in:
- Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-023-02750-7
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- Publication type:
- Article