Works by Krijgsman, Oscar

Results: 29
    1

    High CD8<sup>+</sup> tumour‐infiltrating lymphocyte density associates with unfavourable prognosis in oesophageal adenocarcinoma following poor response to neoadjuvant chemoradiotherapy.

    Published in:
    Histopathology, 2021, v. 79, n. 2, p. 238, doi. 10.1111/his.14361
    By:
    • Koemans, Willem J;
    • Dieren, Jolanda M;
    • Berg, Jose G;
    • Meijer, Gerrit A;
    • Snaebjornsson, Petur;
    • Chalabi, Myriam;
    • Lecot, Frederig;
    • Riedl, Robert;
    • Krijgsman, Oscar;
    • Hofland, Ingrid;
    • Broeks, Annegien;
    • Voncken, Francine E M;
    • Peppelenbosch, Maikel P;
    • Sosef, Meindert N;
    • Sandick, Johanna W;
    • Kodach, Liudmila L
    Publication type:
    Article
    2

    CopywriteR: DNA copy number detection from off-target sequence data.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 49, doi. 10.1186/s13059-015-0617-1
    By:
    • Kuilman, Thomas;
    • Velds, Arno;
    • Kemper, Kristel;
    • Ranzani, Marco;
    • Bombardelli, Lorenzo;
    • Hoogstraat, Marlous;
    • Nevedomskaya, Ekaterina;
    • Guotai Xu;
    • de Ruiter, Julian;
    • Lolkema, Martijn P;
    • Ylstra, Bauke;
    • Jonkers, Jos;
    • Rottenberg, Sven;
    • Wessels, Lodewyk F;
    • Adams, David J;
    • Peeper, Daniel S;
    • Krijgsman, Oscar
    Publication type:
    Article
    3

    CopywriteR: DNA copy number detection from off-target sequence data.

    Published in:
    Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0617-1
    By:
    • Kuilman, Thomas;
    • Velds, Arno;
    • Kemper, Kristel;
    • Ranzani, Marco;
    • Bombardelli, Lorenzo;
    • Hoogstraat, Marlous;
    • Nevedomskaya, Ekaterina;
    • Xu, Guotai;
    • de Ruiter, Julian;
    • Lolkema, Martijn P.;
    • Ylstra, Bauke;
    • Jonkers, Jos;
    • Rottenberg, Sven;
    • Wessels, Lodewyk F.;
    • Adams, David J.;
    • Peeper, Daniel S.;
    • Krijgsman, Oscar
    Publication type:
    Article
    4

    Robust BRCA1-like classification of copy number profiles of samples repeated across different datasets and platforms.

    Published in:
    Molecular Oncology, 2015, v. 9, n. 7, p. 1274, doi. 10.1016/j.molonc.2015.03.002
    By:
    • Schouten, Philip C.;
    • Grigoriadis, Anita;
    • Kuilman, Thomas;
    • Mirza, Hasan;
    • Watkins, Johnathan A.;
    • Cooke, Saskia A.;
    • van Dyk, Ewald;
    • Severson, Tesa M.;
    • Rueda, Oscar M.;
    • Hoogstraat, Marlous;
    • Verhagen, Caroline V.M.;
    • Natrajan, Rachael;
    • Chin, Suet-Feung;
    • Lips, Esther H.;
    • Kruizinga, Janneke;
    • Velds, Arno;
    • Nieuwland, Marja;
    • Kerkhoven, Ron M.;
    • Krijgsman, Oscar;
    • Vens, Conchita
    Publication type:
    Article
    5

    Targeting CDK2 overcomes melanoma resistance against BRAF and Hsp90 inhibitors.

    Published in:
    Molecular Systems Biology, 2018, v. 14, n. 3, p. 1, doi. 10.15252/msb.20177858
    By:
    • Azimi, Alireza;
    • Caramuta, Stefano;
    • Seashore‐Ludlow, Brinton;
    • Boström, Johan;
    • Robinson, Jonathan L;
    • Edfors, Fredrik;
    • Tuominen, Rainer;
    • Kemper, Kristel;
    • Krijgsman, Oscar;
    • Peeper, Daniel S;
    • Nielsen, Jens;
    • Hansson, Johan;
    • Egyhazi Brage, Suzanne;
    • Altun, Mikael;
    • Uhlen, Mathias;
    • Maddalo, Gianluca
    Publication type:
    Article
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    Enabling next-generation engineered TCR-T therapies based on high-throughput TCR discovery from diagnostic tumor biopsies.

    Published in:
    Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-024-55420-6
    By:
    • Kuilman, Thomas;
    • Schrikkema, Deborah S.;
    • Gadiot, Jules;
    • Gomez-Eerland, Raquel;
    • Bies, Laura;
    • Walker, Julia;
    • Spaapen, Robbert M.;
    • Kok, Hanna;
    • Houg, Demi;
    • Viyacheva, Milena;
    • Claassen, Yvonne B.;
    • Saornil, Manuel;
    • Krijgsman, Oscar;
    • Stringer, Bas;
    • Ding, Huiwen;
    • Geleijnse, Anou;
    • Meinema, Anne C.;
    • Weissbrich, Bianca;
    • Lancee, Melissa;
    • Engele, Carmen G.
    Publication type:
    Article
    9

    XenofilteR: computational deconvolution of mouse and human reads in tumor xenograft sequence data.

    Published in:
    BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2353-5
    By:
    • Kluin, Roelof J. C.;
    • Kemper, Kristel;
    • Kuilman, Thomas;
    • de Ruiter, Julian R.;
    • Iyer, Vivek;
    • Forment, Josep V.;
    • Cornelissen-Steijger, Paulien;
    • de Rink, Iris;
    • ter Brugge, Petra;
    • Song, Ji-Ying;
    • Klarenbeek, Sjoerd;
    • McDermott, Ultan;
    • Jonkers, Jos;
    • Velds, Arno;
    • Adams, David J.;
    • Peeper, Daniel S.;
    • Krijgsman, Oscar
    Publication type:
    Article
    10

    Integrative epigenetic taxonomy of primary prostate cancer.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07270-2
    By:
    • Stelloo, Suzan;
    • Nevedomskaya, Ekaterina;
    • Kim, Yongsoo;
    • Schuurman, Karianne;
    • Valle-Encinas, Eider;
    • Lobo, João;
    • Krijgsman, Oscar;
    • Peeper, Daniel Simon;
    • Chang, Seiwon Laura;
    • Feng, Felix Yi-Chung;
    • Wessels, Lodewyk Frederik Ary;
    • Henrique, Rui;
    • Jerónimo, Carmen;
    • Bergman, Andries Marinus;
    • Zwart, Wilbert
    Publication type:
    Article
    11

    MITF: More Interesting Traits, Folks!

    Published in:
    Pigment Cell & Melanoma Research, 2016, v. 29, n. 3, p. 263, doi. 10.1111/pcmr.12476
    By:
    • Kemper, Kristel;
    • Krijgsman, Oscar;
    • Peeper, Daniel S.
    Publication type:
    Article
    12

    Detailed imaging and genetic analysis reveal a secondary BRAF<sup>L</sup><sup>505H</sup> resistance mutation and extensive intrapatient heterogeneity in metastatic BRAF mutant melanoma patients treated with vemurafenib.

    Published in:
    Pigment Cell & Melanoma Research, 2015, v. 28, n. 3, p. 318, doi. 10.1111/pcmr.12347
    By:
    • Hoogstraat, Marlous;
    • Gadellaa ‐ van Hooijdonk, Christa G.;
    • Ubink, Inge;
    • Besselink, Nicolle J. M.;
    • Pieterse, Mark;
    • Veldhuis, Wouter;
    • Stralen, Marijn;
    • Meijer, Eelco F. J.;
    • Willems, Stefan M.;
    • Hadders, Michael A.;
    • Kuilman, Thomas;
    • Krijgsman, Oscar;
    • Peeper, Daniel S.;
    • Koudijs, Marco J.;
    • Cuppen, Edwin;
    • Voest, Emile E.;
    • Lolkema, Martijn P.
    Publication type:
    Article
    13

    Absence of PD-L1 expression on tumor cells in the context of an activated immune infiltrate may indicate impaired IFNγ signaling in non-small cell lung cancer.

    Published in:
    PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0216864
    By:
    • Theelen, Willemijn S. M. E.;
    • Kuilman, Thomas;
    • Schulze, Katja;
    • Zou, Wei;
    • Krijgsman, Oscar;
    • Peters, Dennis D. G. C.;
    • Cornelissen, Sten;
    • Monkhorst, Kim;
    • Sarma, Pranamee;
    • Sumiyoshi, Teiko;
    • Amler, Lukas C.;
    • Willems, Stefan M.;
    • Blaauwgeers, Johannes L. G.;
    • van Noesel, Carel J. M.;
    • Peeper, Daniel S.;
    • van den Heuvel, Michel M.;
    • Kowanetz, Marcin
    Publication type:
    Article
    14
    15

    Genomic aberrations relate early and advanced stage ovarian cancer.

    Published in:
    Cellular Oncology (2211-3428), 2012, v. 35, n. 3, p. 181, doi. 10.1007/s13402-012-0077-5
    By:
    • Zaal, Afra;
    • Peyrot, Wouter;
    • Berns, P.;
    • Burg, Maria;
    • Veerbeek, Jan;
    • Trimbos, J.;
    • Cadron, Isabelle;
    • Diest, Paul;
    • Wieringen, Wessel;
    • Krijgsman, Oscar;
    • Meijer, Gerrit;
    • Piek, Jurgen;
    • Timmers, Petra;
    • Vergote, Ignace;
    • Verheijen, René;
    • Ylstra, Bauke;
    • Zweemer, Ronald
    Publication type:
    Article
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    Low MITF/AXL ratio predicts early resistance to multiple targeted drugs in melanoma.

    Published in:
    Nature Communications, 2014, v. 5, n. 12, p. 5712, doi. 10.1038/ncomms6712
    By:
    • Müller, Judith;
    • Krijgsman, Oscar;
    • Tsoi, Jennifer;
    • Robert, Lidia;
    • Hugo, Willy;
    • Song, Chunying;
    • Kong, Xiangju;
    • Possik, Patricia A.;
    • Cornelissen-Steijger, Paulien D. M.;
    • Foppen, Marnix H Geukes;
    • Kemper, Kristel;
    • Goding, Colin R.;
    • McDermott, Ultan;
    • Blank, Christian;
    • Haanen, John;
    • Graeber, Thomas G.;
    • Ribas, Antoni;
    • Lo, Roger S.;
    • Peeper, Daniel S.
    Publication type:
    Article
    21

    Reversal of pre-existing NGFR-driven tumor and immune therapy resistance.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17739-8
    By:
    • Boshuizen, Julia;
    • Vredevoogd, David W.;
    • Krijgsman, Oscar;
    • Ligtenberg, Maarten A.;
    • Blankenstein, Stephanie;
    • de Bruijn, Beaunelle;
    • Frederick, Dennie T.;
    • Kenski, Juliana C. N.;
    • Parren, Mara;
    • Brüggemann, Marieke;
    • Madu, Max F.;
    • Rozeman, Elisa A.;
    • Song, Ji-Ying;
    • Horlings, Hugo M.;
    • Blank, Christian U.;
    • van Akkooi, Alexander C. J.;
    • Flaherty, Keith T.;
    • Boland, Genevieve M.;
    • Peeper, Daniel S.
    Publication type:
    Article
    22
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    Author Correction: Reversal of pre-existing NGFR-driven tumor and immune therapy resistance.

    Published in:
    2023
    By:
    • Boshuizen, Julia;
    • Vredevoogd, David W.;
    • Krijgsman, Oscar;
    • Ligtenberg, Maarten A.;
    • Blankenstein, Stephanie;
    • de Bruijn, Beaunelle;
    • Frederick, Dennie T.;
    • Kenski, Juliana C. N.;
    • Parren, Mara;
    • Brüggemann, Marieke;
    • Madu, Max F.;
    • Rozeman, Elisa A.;
    • Song, Ji-Ying;
    • Horlings, Hugo M.;
    • Blank, Christian U.;
    • van Akkooi, Alexander C. J.;
    • Flaherty, Keith T.;
    • Boland, Genevieve M.;
    • Peeper, Daniel S.
    Publication type:
    Correction Notice
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    28

    Ubiquitin ligase STUB1 destabilizes IFNγ-receptor complex to suppress tumor IFNγ signaling.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29442-x
    By:
    • Apriamashvili, Georgi;
    • Vredevoogd, David W.;
    • Krijgsman, Oscar;
    • Bleijerveld, Onno B.;
    • Ligtenberg, Maarten A.;
    • de Bruijn, Beaunelle;
    • Boshuizen, Julia;
    • Traets, Joleen J. H.;
    • D'Empaire Altimari, Daniela;
    • van Vliet, Alex;
    • Lin, Chun-Pu;
    • Visser, Nils L.;
    • Londino, James D.;
    • Sanchez-Hodge, Rebekah;
    • Oswalt, Leah E.;
    • Altinok, Selin;
    • Schisler, Jonathan C.;
    • Altelaar, Maarten;
    • Peeper, Daniel S.
    Publication type:
    Article
    29

    Neoadjuvant immunotherapy with nivolumab and ipilimumab induces major pathological responses in patients with head and neck squamous cell carcinoma.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26472-9
    By:
    • Vos, Joris L.;
    • Elbers, Joris B. W.;
    • Krijgsman, Oscar;
    • Traets, Joleen J. H.;
    • Qiao, Xiaohang;
    • van der Leun, Anne M.;
    • Lubeck, Yoni;
    • Seignette, Iris M.;
    • Smit, Laura A.;
    • Willems, Stefan M.;
    • van den Brekel, Michiel W. M.;
    • Dirven, Richard;
    • Baris Karakullukcu, M.;
    • Karssemakers, Luc;
    • Klop, W. Martin C.;
    • Lohuis, Peter J. F. M.;
    • Schreuder, Willem H.;
    • Smeele, Ludi E.;
    • van der Velden, Lilly-Ann;
    • Bing Tan, I.
    Publication type:
    Article