Works by Kovařík, Aleš

Results: 56

Cover Feature: Acid‐Catalyzed RNA‐Oligomerization from 3',5'‐cGMP (Chem. Eur. J. 70/2021).

Published in:

Chemistry - A European Journal, 2021, v. 27, n. 70, p. 17506, doi. 10.1002/chem.202104216

By:

Wunnava, Sreekar;
Dirscherl, Christina F.;
Výravský, Jakub;
Kovařík, Aleš;
Matyášek, Roman;
Šponer, Jiří;
Braun, Dieter;
Šponer, Judit E.

Publication type:

Article

Acid‐Catalyzed RNA‐Oligomerization from 3',5'‐cGMP.

Published in:

Chemistry - A European Journal, 2021, v. 27, n. 70, p. 17581, doi. 10.1002/chem.202103672

By:

Wunnava, Sreekar;
Dirscherl, Christina F.;
Výravský, Jakub;
Kovařík, Aleš;
Matyášek, Roman;
Šponer, Jiří;
Braun, Dieter;
Šponer, Judit E.

Publication type:

Article

Correction to: Third release of the plant rDNA database with updated content and information on telomere composition and sequenced plant genomes.

Published in:

2018

By:

Vitales, Daniel;
D’Ambrosio, Ugo;
Gálvez, Francisco;
Kovařík, Aleš;
Garcia, Sònia

Publication type:

Erratum

Third release of the plant rDNA database with updated content and information on telomere composition and sequenced plant genomes.

Published in:

Plant Systematics & Evolution, 2017, v. 303, n. 8, p. 1115, doi. 10.1007/s00606-017-1440-9

By:

Vitales, Daniel;
D'Ambrosio, Ugo;
Gálvez, Francisco;
Kovařík, Aleš;
Garcia, Sònia

Publication type:

Article

More the Merrier: Recent Hybridization and Polyploidy in Cardamine.

Published in:

Plant Cell, 2013, v. 25, n. 9, p. 3280, doi. 10.1105/tpc.113.114405

By:

Mandáková, Terezie;
Kovařík, Aleš;
Zozomová-Lihová, Judita;
Shimizu-Inatsugi, Rie;
Shimizu, Kentaro K.;
Mummenhoff, Klaus;
Marhold, Karol;
Lysak, Martin A.

Publication type:

Article

Power and Weakness of Repetition – Evaluating the Phylogenetic Signal From Repeatomes in the Family Rosaceae With Two Case Studies From Genera Prone to Polyploidy and Hybridization (Rosa and Fragaria).

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.738119

By:

Herklotz, Veit;
Kovařík, Aleš;
Wissemann, Volker;
Lunerová, Jana;
Vozárová, Radka;
Buschmann, Sebastian;
Olbricht, Klaus;
Groth, Marco;
Ritz, Christiane M.

Publication type:

Article

Mega‐sized pericentromeric blocks of simple telomeric repeats and their variants reveal patterns of chromosome evolution in ancient Cycadales genomes.

Published in:

Plant Journal, 2022, v. 112, n. 3, p. 646, doi. 10.1111/tpj.15969

By:

Vozárová, Radka;
Wang, Wencai;
Lunerová, Jana;
Shao, Fengqing;
Pellicer, Jaume;
Leitch, Ilia J.;
Leitch, Andrew R.;
Kovařík, Aleš

Publication type:

Article

Mutational Asymmetries in the SARS-CoV-2 Genome May Lead to Increased Hydrophobicity of Virus Proteins.

Published in:

Genes, 2021, v. 13, n. 6, p. 826, doi. 10.3390/genes12060826

By:

Matyášek, Roman;
Řehůřková, Kateřina;
Berta Marošiová, Kristýna;
Kovařík, Aleš

Publication type:

Article

Mutation Patterns of Human SARS-CoV-2 and Bat RaTG13 Coronavirus Genomes Are Strongly Biased Towards C>U Transitions, Indicating Rapid Evolution in Their Hosts.

Published in:

Genes, 2020, v. 11, n. 7, p. 761, doi. 10.3390/genes11070761

By:

Matyášek, Roman;
Kovařík, Aleš

Publication type:

Article

Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-722

By:

Matyášek, Roman;
Renny-Byfield, Simon;
Fulneček, Jaroslav;
Macas, Jiř í.;
Grandbastien, Marie-Angele;
Nichols, Richard;
Leitch, Andrew;
Kovařík, Aleš

Publication type:

Article

Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-1

By:

Matyášek, Roman;
Renny-Byfield, Simon;
Fulneċek, Jaroslav;
Macas, Jir í;
Grandbastien, Marie-Angele;
Nichols, Richard;
Leitch, Andrew;
Kovařík, Aleš

Publication type:

Article

Spatiotemporal Mislocalization of Nuclear Membrane-Associated Proteins in γ-Irradiation-Induced Senescent Cells.

Published in:

Cells (2073-4409), 2020, v. 9, n. 4, p. 999, doi. 10.3390/cells9040999

By:

Alena, Svobodová Kovaříková;
Eva, Bártová;
Aleš, Kovařík;
Emilie, Lukášová

Publication type:

Article

N6-Adenosine Methylation in RNA and a Reduced m3G/TMG Level in Non-Coding RNAs Appear at Microirradiation-Induced DNA Lesions.

Published in:

Cells (2073-4409), 2020, v. 9, n. 2, p. 360, doi. 10.3390/cells9020360

By:

Svobodová Kovaříková, Alena;
Stixová, Lenka;
Kovařík, Aleš;
Komůrková, Denisa;
Legartová, Soňa;
Fagherazzi, Paolo;
Bártová, Eva

Publication type:

Article

Consequences of Lamin B1 and Lamin B Receptor Downregulation in Senescence.

Published in:

Cells (2073-4409), 2018, v. 7, n. 2, p. 11, doi. 10.3390/cells7020011

By:

Lukášová, Emilie;
Kovařík, Aleš;
Kozubek, Stanislav

Publication type:

Article

Epigenetic histone H3 phosphorylation marks discriminate between univalent- and bivalent-forming chromosomes during canina asymmetrical meiosis.

Published in:

Annals of Botany, 2024, v. 133, n. 3, p. 435, doi. 10.1093/aob/mcad198

By:

Kalfusová, Radka;
Herklotz, Veit;
Kumke, Katrin;
Houben, Andreas;
Kovařík, Aleš;
Ritz, Christiane M;
Lunerová, Jana

Publication type:

Article

Asymmetrical canina meiosis is accompanied by the expansion of a pericentromeric satellite in non-recombining univalent chromosomes in the genus Rosa.

Published in:

Annals of Botany, 2020, v. 125, n. 7, p. 1025, doi. 10.1093/aob/mcaa028

By:

Lunerová, Jana;
Herklotz, Veit;
Laudien, Melanie;
Vozárová, Radka;
Groth, Marco;
Kovařík, Aleš;
Ritz, Christiane M

Publication type:

Article

Remarkable variation of ribosomal DNA organization and copy number in gnetophytes, a distinct lineage of gymnosperms.

Published in:

Annals of Botany, 2019, v. 123, n. 5, p. 767, doi. 10.1093/aob/mcy172

By:

Wang, Wencai;
Becher, Hannes;
Leitch, Andrew R;
Wan, Tao;
Kuderova, Alena;
Kovařík, Aleš;
Leitch, Ilia J;
Garcia, Sònia

Publication type:

Article

Gene conversion events and variable degree of homogenization of rDNA loci in cultivars of Brassica napus.

Published in:

Annals of Botany, 2017, v. 119, n. 1, p. 13, doi. 10.1093/aob/mcw187

By:

Sochorová, Jana;
Coriton, Olivier;
Kuderová, Alena;
Lunerová, Jana;
Chèvre, Anne-Marie;
Kovařík, Aleš

Publication type:

Article

The effect of polyploidy and hybridization on the evolution of floral colour in Nicotiana (Solanaceae).

Published in:

Annals of Botany, 2015, v. 115, n. 7, p. 1117, doi. 10.1093/aob/mcv048

By:

McCarthy, Elizabeth W.;
Arnold, Sarah E. J.;
Chittka, Lars;
Le Comber, Steven C.;
Verity, Robert;
Dodsworth, Steven;
Knapp, Sandra;
Kelly, Laura J.;
Chase, Mark W.;
Baldwin, Ian T.;
Kovařík, Aleš;
Mhiri, Corinne;
Taylor, Lin;
Leitch, Andrew R.

Publication type:

Article

Intact ribosomal DNA arrays of Potentilla origin detected in Erythronium nucleus suggest recent eudicot‐to‐monocot horizontal transfer.

Published in:

New Phytologist, 2022, v. 235, n. 3, p. 1246, doi. 10.1111/nph.18171

By:

Bartha, László;
Mandáková, Terezie;
Kovařík, Aleš;
Bulzu, Paul‐Adrian;
Rodde, Nathalie;
Mahelka, Václav;
Lysak, Martin A.;
Fustier, Margaux‐Alison;
Šafář, Jan;
Cápal, Petr;
Keresztes, Lujza;
Banciu, Horia L.

Publication type:

Article

Unique Epigenetic Features of Ribosomal RNA Genes (rDNA) in Early Diverging Plants (Bryophytes).

Published in:

Frontiers in Plant Science, 2019, p. 1, doi. 10.3389/fpls.2019.01066

By:

Matyášek, Roman;
Krumpolcová, Alice;
Lunerová, Jana;
Mikulášková, Eva;
Rosselló, Josep A.;
Kovařík, Aleš

Publication type:

Article

PARP-dependent and NAT10-independent acetylation of N4-cytidine in RNA appears in UV-damaged chromatin.

Published in:

Epigenetics & Chromatin, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13072-023-00501-x

By:

Svobodová Kovaříková, Alena;
Stixová, Lenka;
Kovařík, Aleš;
Bártová, Eva

Publication type:

Article

Concerted Evolution of rDNA in Recently Formed Tragopogon Allotetraploids Is Typically Associated With an Inverse Correlation Between Gene Copy Number and Expression.

Published in:

Genetics, 2007, v. 176, n. 4, p. 2509, doi. 10.1534/genetics.107.072751

By:

Matyóšek, Roman;
Tate, Jennifer A.;
Lim, Yoong K.;
Šrubařová, Hana;
Jin Koh;
Leitch, Andrew R.;
Soltis, Douglas E.;
Soltis, Pamela S.;
Kovařík, Aleš

Publication type:

Article

The fate of ribosomal RNA genes in spontaneous polyploid dogrose hybrids [<italic>Rosa</italic> L. sect. <italic>Caninae</italic> (DC.) Ser.] exhibiting non‐symmetrical meiosis.

Published in:

Plant Journal, 2018, v. 94, n. 1, p. 77, doi. 10.1111/tpj.13843

By:

Herklotz, Veit;
Kovařík, Aleš;
Lunerová, Jana;
Lippitsch, Susan;
Groth, Marco;
Ritz, Christiane M.

Publication type:

Article

Interpopulation hybridization generates meiotically stable rDNA epigenetic variants in allotetraploid Tragopogon mirus.

Published in:

Plant Journal, 2016, v. 85, n. 3, p. 362, doi. 10.1111/tpj.13110

By:

Matyášek, Roman;
Dobešová, Eva;
Húska, Dalibor;
Ježková, Ivana;
Soltis, Pamela S.;
Soltis, Douglas E.;
Kovařík, Aleš

Publication type:

Article

Transitive RNA silencing signals induce cytosine methylation of a transgenic but not an endogenous target.

Published in:

Plant Journal, 2013, v. 74, n. 5, p. 867, doi. 10.1111/tpj.12172

By:

Vermeersch, Leen;
Winne, Nancy;
Nolf, Jonah;
Bleys, Annick;
Kovařík, Aleš;
Depicker, Ann

Publication type:

Article

Trans-generation inheritance of methylation patterns in a tobacco transgene following a post-transcriptional silencing event.

Published in:

Plant Journal, 2008, v. 54, n. 6, p. 1049, doi. 10.1111/j.1365-313X.2008.03475.x

By:

Lunerová-Bedřichová, Jana;
Bleys, Annick;
Fojtová, Miloslava;
Khaitová, Lucie;
Depicker, Anna;
Kovařík, Aleš

Publication type:

Article

Evaluation of DNA bending models in their capacity to predict electrophoretic migration anomalies of satellite DNA sequences.

Published in:

Electrophoresis, 2013, v. 34, n. 17, p. 2511, doi. 10.1002/elps.201300227

By:

Matyášek, Roman;
Fulneček, Jaroslav;
Kovařík, Aleš

Publication type:

Article

Sex‐chrom, a database on plant sex chromosomes.

Published in:

New Phytologist, 2020, v. 227, n. 6, p. 1594, doi. 10.1111/nph.16635

By:

Baránková, Simona;
Pascual‐Díaz, Joan Pere;
Sultana, Nusrat;
Alonso‐Lifante, Maria Pilar;
Balant, Manica;
Barros, Karina;
D'Ambrosio, Ugo;
Malinská, Hana;
Peska, Vratislav;
Pérez Lorenzo, Iván;
Kovařík, Aleš;
Vyskot, Boris;
Janoušek, Bohuslav;
Garcia, Sònia

Publication type:

Article

B-chrom: a database on B-chromosomes of plants, animals and fungi.

Published in:

New Phytologist, 2017, v. 216, n. 3, p. 635, doi. 10.1111/nph.14723

By:

D'Ambrosio, Ugo;
Alonso ‐ Lifante, M. Pilar;
Barros, Karina;
Kovařík, Aleš;
Mas de Xaxars, Gemma;
Garcia, Sònia

Publication type:

Article

When fathers are instant losers: homogenization of rDNA loci in recently formed Cardamine × schulzii trigenomic allopolyploid.

Published in:

New Phytologist, 2014, v. 203, n. 4, p. 1096, doi. 10.1111/nph.12873

By:

Zozomová‐Lihová, Judita;
Mandáková, Terezie;
Kovaříková, Alena;
Mühlhausen, Andreas;
Mummenhoff, Klaus;
Lysak, Martin A.;
Kovařík, Aleš

Publication type:

Article

Transcription activity of rRNA genes correlates with a tendency towards intergenomic homogenization in Nicotiana allotetraploids.

Published in:

New Phytologist, 2007, v. 174, n. 3, p. 658, doi. 10.1111/j.1469-8137.2007.02034.x

By:

Dadejová, Martina;
K. Yoong Lim;
Soucková-Skalická, Kamila;
Matyášek, Roman;
Grandbastien, Marie-Angéle;
Leitch, Andrew;
Kovařík, Aleš

Publication type:

Article

Plant rDNA database: update and new features.

Published in:

Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau063

By:

Garcia, Sònia;
Gálvez, Francisco;
Gras, Airy;
Kovařík, Aleš;
Garnatje, Teresa

Publication type:

Article

Intragenomic heterogeneity of intergenic ribosomal DNA spacers in Cucurbita moschata is determined by DNA minisatellites with variable potential to form non-canonical DNA conformations.

Published in:

DNA Research, 2019, v. 26, n. 3, p. 273, doi. 10.1093/dnares/dsz008

By:

Matyášek, Roman;
Kuderová, Alena;
Kutílková, Eva;
Kučera, Marek;
Kovařík, Aleš

Publication type:

Article

How to interpret Methylation Sensitive Amplified Polymorphism (MSAP) profiles?

Published in:

BMC Genetics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2156-15-2

By:

Fulneček, Jaroslav;
Kovařík, Aleš

Publication type:

Article

Application of magnetic polymethacrylate-based microspheres for the isolation of DNA from raw vegetables and processed foods of plant origin.

Published in:

Journal of Food Processing & Preservation, 2018, v. 42, n. 1, p. n/a, doi. 10.1111/jfpp.13384

By:

Trojánek, Zdeněk;
Kovařík, Aleš;
Španová, Alena;
Marošiová, Kristýna;
Horák, Daniel;
Rittich, Bohuslav

Publication type:

Article

Influence of Silicate Rock Glass Compositions on the Efficacy of Prebiotic RNA Polymerization Reactions: The Case of 3',5' Cyclic Guanosine Monophosphate.

Published in:

ChemSystemsChem, 2023, v. 5, n. 5, p. 1, doi. 10.1002/syst.202300016

By:

Šponer, Judit E.;
Kloužek, Jaroslav;
Výravský, Jakub;
Wunnava, Sreekar;
Scheu, Bettina;
Braun, Dieter;
Mojzsis, Stephen J.;
Palacký, Jan;
Vorlíčková, Michaela;
Šponer, Jiří;
Matyášek, Roman;
Kovařík, Aleš

Publication type:

Article

Nonenzymatic, Template‐Free Polymerization of 3',5' Cyclic Guanosine Monophosphate on Mineral Surfaces.

Published in:

ChemSystemsChem, 2021, v. 3, n. 6, p. 1, doi. 10.1002/syst.202100017

By:

Šponer, Judit E.;
Šponer, Jiří;
Výravský, Jakub;
Šedo, Ondrej;
Zdráhal, Zbyněk;
Costanzo, Giovanna;
Di Mauro, Ernesto;
Wunnava, Sreekar;
Braun, Dieter;
Matyášek, Roman;
Kovařík, Aleš

Publication type:

Article

Questions and Answers Related to the Prebiotic Production of Oligonucleotide Sequences from 3′,5′ Cyclic Nucleotide Precursors.

Published in:

Life (2075-1729), 2021, v. 11, n. 8, p. 800, doi. 10.3390/life11080800

By:

Šponer, Judit E.;
Šponer, Jiří;
Kovařík, Aleš;
Šedo, Ondrej;
Zdráhal, Zbyněk;
Costanzo, Giovanna;
Di Mauro, Ernesto

Publication type:

Article

DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 10, p. 1, doi. 10.1093/gbe/evab228

By:

Lehmann, Robert;
Kovařík, Aleš;
Ocalewicz, Konrad;
Kirtiklis, Lech;
Zuccolo, Andrea;
Tegner, Jesper N;
Wanzenböck, Josef;
Bernatchez, Louis;
Lamatsch, Dunja K;
Symonová, Radka

Publication type:

Article

Conserved Organisation of 45S rDNA Sites and rDNA Gene Copy Number among Major Clades of Early Land Plants.

Published in:

PLoS ONE, 2016, v. 11, n. 9, p. 1, doi. 10.1371/journal.pone.0162544

By:

Rosato, Marcela;
Kovařík, Aleš;
Garilleti, Ricardo;
Rosselló, Josep A.

Publication type:

Article

Correction: Svobodova et al. N 6 -Adenosine Methylation in RNA and a Reduced m 3 G/TMG Level in Non-Coding RNAs Appear at Microirradiation-Induced DNA Lesions. Cells 2020, 9 , 360.

Published in:

2024

By:

Kovaříková, Alena Svobodová;
Stixová, Lenka;
Kovařík, Aleš;
Komůrková, Denisa;
Legartová, Soňa;
Fagherazzi, Paolo;
Bártová, Eva

Publication type:

Correction Notice

The SC-35 Splicing Factor Interacts with RNA Pol II and A-Type Lamin Depletion Weakens This Interaction.

Published in:

Cells (2073-4409), 2021, v. 10, n. 2, p. 297, doi. 10.3390/cells10020297

By:

Legartová, Soňa;
Fagherazzi, Paolo;
Stixová, Lenka;
Kovařík, Aleš;
Raška, Ivan;
Bártová, Eva;
Dechat, Thomas

Publication type:

Article

Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi‐omics approach.

Published in:

Plant Genome, 2022, v. 15, n. 1, p. 1, doi. 10.1002/tpg2.20191

By:

Tulpová, Zuzana;
Kovařík, Aleš;
Toegelová, Helena;
Navrátilová, Pavla;
Kapustová, Veronika;
Hřibová, Eva;
Vrána, Jan;
Macas, Jiří;
Doležel, Jaroslav;
Šimková, Hana

Publication type:

Article

Transcriptional Silencing of 35S rDNA in Tragopogon porrifolius Correlates with Cytosine Methylation in Sequence-Specific Manner.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 14, p. 7540, doi. 10.3390/ijms25147540

By:

Matyášek, Roman;
Kalfusová, Radka;
Kuderová, Alena;
Řehůřková, Kateřina;
Sochorová, Jana;
Kovařík, Aleš

Publication type:

Article

Analyses of the Updated "Animal rDNA Loci Database" with an Emphasis on Its New Features.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 21, p. 11403, doi. 10.3390/ijms222111403

By:

Sochorová, Jana;
Gálvez, Francisco;
Matyášek, Roman;
Garcia, Sònia;
Kovařík, Aleš

Publication type:

Article

Loss of lamin B receptor is necessary to induce cellular senescence.

Published in:

Biochemical Journal, 2017, v. 474, n. 2, p. 281, doi. 10.1042/BCJ20160459

By:

Lukášová, Emilie;
Kovařík, Aleš;
Bačíková, Alena;
Falk, Martin;
Kozubek, Stanislav

Publication type:

Article

Editorial: Molecular organization, evolution, and function of ribosomal DNA.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.994380

By:

Volkov, Roman A.;
Borisjuk, Nikolai;
Garcia, Sònia;
Kovařík, Aleš;
Sáez-Vásquez, Julio

Publication type:

Article

Capture of DNAs by magnetic hypercrosslinked poly(styrene-co-divinylbenzene) microspheres.

Published in:

Journal of Materials Science, 2021, v. 56, n. 9, p. 5817, doi. 10.1007/s10853-020-05649-5

By:

Fecková, Maria;
Tóth, Judit;
Šálek, Petr;
Španová, Alena;
Horák, Daniel;
Shubhra, Quazi T. H.;
Kovařík, Aleš;
Gyenis, János;
Rittich, Bohuslav

Publication type:

Article

Inhibition of SAH-hydrolase activity during seed germination leads to deregulation of flowering genes and altered flower morphology in tobacco.

Published in:

Molecular Genetics & Genomics, 2011, v. 285, n. 3, p. 225, doi. 10.1007/s00438-011-0601-8

By:

Fulneček, Jaroslav;
Matyášek, Roman;
Votruba, Ivan;
Holý, Antonín;
Křížová, Kateřina;
Kovařík, Aleš

Publication type:

Article