Works by Korthauer, Keegan

Results: 13

Methods for Collapsing Multiple Rare Variants in Whole-Genome Sequence Data.

Published in:

Genetic Epidemiology, 2014, v. 38, p. S13, doi. 10.1002/gepi.21820

By:

Sung, Yun Ju;
Korthauer, Keegan D.;
Swartz, Michael D.;
Engelman, Corinne D.

Publication type:

Article

A practical guide to methods controlling false discoveries in computational biology.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1716-1

By:

Korthauer, Keegan;
Kimes, Patrick K.;
Duvallet, Claire;
Reyes, Alejandro;
Subramanian, Ayshwarya;
Teng, Mingxiang;
Shukla, Chinmay;
Alm, Eric J.;
Hicks, Stephanie C.

Publication type:

Article

Androgen receptor and MYC equilibration centralizes on developmental super-enhancer.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27077-y

By:

Guo, Haiyang;
Wu, Yiming;
Nouri, Mannan;
Spisak, Sandor;
Russo, Joshua W.;
Sowalsky, Adam G.;
Pomerantz, Mark M.;
Wei, Zhao;
Korthauer, Keegan;
Seo, Ji-Heui;
Wang, Liyang;
Arai, Seiji;
Freedman, Matthew L.;
He, Housheng Hansen;
Chen, Shaoyong;
Balk, Steven P.

Publication type:

Article

vmrseq: probabilistic modeling of single-cell methylation heterogeneity.

Published in:

Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03457-7

By:

Shen, Ning;
Korthauer, Keegan

Publication type:

Article

High-throughput identification of RNA nuclear enrichment sequences.

Published in:

EMBO Journal, 2018, v. 37, n. 6, p. 1, doi. 10.15252/embj.201798452

By:

Shukla, Chinmay J;
McCorkindale, Alexandra L;
Gerhardinger, Chiara;
Korthauer, Keegan D;
Cabili, Moran N;
Shechner, David M;
Irizarry, Rafael A;
Maass, Philipp G;
Rinn, John L

Publication type:

Article

MADGiC: a model-based approach for identifying driver genes in cancer.

Published in:

2015

By:

Korthauer, Keegan D.;
Kendziorski, Christina

Publication type:

Case Study

Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing.

Published in:

2019

By:

Korthauer, Keegan;
Chakraborty, Sutirtha;
Benjamini, Yuval;
Irizarry, Rafael A

Publication type:

journal article

A statistical approach for identifying differential distributions in single-cell RNA-seq experiments.

Published in:

Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1077-y

By:

Korthauer, Keegan D.;
Li-Fang Chu;
Newton, Michael A.;
Yuan Li;
Thomson, James;
Stewart, Ron;
Kendziorski, Christina

Publication type:

Article

Pterostilbene Targets Hallmarks of Aging in the Gene Expression Landscape in Blood of Healthy Rats.

Published in:

Molecular Nutrition & Food Research, 2024, v. 68, n. 24, p. 1, doi. 10.1002/mnfr.202400662

By:

Tello‐Palencia, Marco A.;
Yang, Tony;
Sularz, Olga;
Demers, Louis Erik;
Ma, Yuexi;
Boycott, Cayla;
Zhang, Huiying Amelie;
Lubecka‐Gajewska, Katarzyna;
Kumar, Sadhri;
Ramsey, Benjamin S.;
Torregrosa‐Allen, Sandra;
Elzey, Bennett D.;
Lanman, Nadia Atallah;
Korthauer, Keegan;
Stefanska, Barbara

Publication type:

Article

Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer.

Published in:

Carcinogenesis, 2016, v. 37, n. 2, p. 188, doi. 10.1093/carcin/bgv171

By:

Bodelon, Clara;
Vinokurova, Svetlana;
Sampson, Joshua N.;
den Boon, Johan A.;
Walker, Joan L.;
Horswill, Mark A.;
Korthauer, Keegan;
Schiffman, Mark;
Sherman, Mark E.;
Zuna, Rosemary E.;
Mitchell, Jason;
Xijun Zhang;
Boland, Joseph F.;
Chaturvedi, Anil K.;
Dunn, S. Terence;
Newton, Michael A.;
Ahlquist, Paul;
Wang, Sophia S.;
Wentzensen, Nicolas

Publication type:

Article

Bayesian Decision Curve Analysis With Bayesdca.

Published in:

Statistics in Medicine, 2024, v. 43, n. 30, p. 6042, doi. 10.1002/sim.10277

By:

Netto Flores Cruz, Giuliano;
Korthauer, Keegan

Publication type:

Article

Conservation and divergence of canonical and non-canonical imprinting in murids.

Published in:

Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02869-1

By:

Richard Albert, Julien;
Kobayashi, Toshihiro;
Inoue, Azusa;
Monteagudo-Sánchez, Ana;
Kumamoto, Soichiro;
Takashima, Tomoya;
Miura, Asuka;
Oikawa, Mami;
Miura, Fumihito;
Takada, Shuji;
Hirabayashi, Masumi;
Korthauer, Keegan;
Kurimoto, Kazuki;
Greenberg, Maxim V. C.;
Lorincz, Matthew;
Kobayashi, Hisato

Publication type:

Article

Differential substrate use in EGF‐ and oncogenic KRAS‐stimulated human mammary epithelial cells.

Published in:

FEBS Journal, 2021, v. 288, n. 19, p. 5629, doi. 10.1111/febs.15858

By:

Keibler, Mark A.;
Dong, Wentao;
Korthauer, Keegan D.;
Hosios, Aaron M.;
Moon, Sun Jin;
Sullivan, Lucas B.;
Liu, Nian;
Abbott, Keene L.;
Arevalo, Orlando D.;
Ho, Kailing;
Lee, Jennifer;
Phanse, Aasavari S.;
Kelleher, Joanne K.;
Iliopoulos, Othon;
Coloff, Jonathan L.;
Vander Heiden, Matthew G.;
Stephanopoulos, Gregory

Publication type:

Article