Works matching AU Korpelainen, Eija

Results: 19

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 140, doi. 10.1093/bioinformatics/btu601

By:

Corpas, Manuel;
Jimenez, Rafael C.;
Bongcam-Rudloff, Erik;
Budd, Aidan;
Brazas, Michelle D.;
Fernandes, Pedro L.;
Gaeta, Bruno;
van Gelder, Celia;
Korpelainen, Eija;
Lewitter, Fran;
McGrath, Annette;
MacLean, Daniel;
Palagi, Patricia M.;
Rother, Kristian;
Taylor, Jan;
Via, Allegra;
Watson, Mick;
Schneider, Maria Victoria;
Attwood, Teresa K.

Publication type:

Article

SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop.

Published in:

Bioinformatics, 2014, v. 30, n. 1, p. 119, doi. 10.1093/bioinformatics/btt601

By:

Schumacher, André;
Pireddu, Luca;
Niemenmaa, Matti;
Kallio, Aleksi;
Korpelainen, Eija;
Zanetti, Gianluigi;
Heljanko, Keijo

Publication type:

Article

iAnn: an event sharing platform for the life sciences.

Published in:

Bioinformatics, 2013, v. 29, n. 15, p. 1919, doi. 10.1093/bioinformatics/btt306

By:

Jimenez, Rafael C.;
Albar, Juan P.;
Bhak, Jong;
Blatter, Marie-Claude;
Blicher, Thomas;
Brazas, Michelle D.;
Brooksbank, Cath;
Budd, Aidan;
De Las Rivas, Javier;
Dreyer, Jacqueline;
van Driel, Marc A.;
Dunn, Michael J.;
Fernandes, Pedro L.;
van Gelder, Celia W. G.;
Hermjakob, Henning;
Ioannidis, Vassilios;
Judge, David P.;
Kahlem, Pascal;
Korpelainen, Eija;
Kraus, Hans-Joachim

Publication type:

Article

Hadoop-BAM: directly manipulating next generation sequencing data in the cloud.

Published in:

Bioinformatics, 2012, v. 28, n. 6, p. 876, doi. 10.1093/bioinformatics/bts054

By:

Niemenmaa, Matti;
Kallio, Aleksi;
Schumacher, André;
Klemelä, Petri;
Korpelainen, Eija;
Heljanko, Keijo

Publication type:

Article

MicroRNA Expression Profiling Reveals MiRNA Families Regulating Specific Biological Pathways in Mouse Frontal Cortex and Hippocampus.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021495

By:

Juhila, Juuso;
Sipilä, Tessa;
Icay, Katherine;
Nicorici, Daniel;
Ellonen, Pekka;
Kallio, Aleksi;
Korpelainen, Eija;
Greco, Dario;
Hovatta, Iiris

Publication type:

Article

Experiences with workflows for automating data-intensive bioinformatics.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0071-8

By:

Spjuth, Ola;
Bongcam-Rudloff, Erik;
Carrasco Hernández, Guillermo;
Forer, Lukas;
Giovacchini, Mario;
Guimera, Roman Valls;
Kallio, Aleksi;
Korpelainen, Eija;
Kańduła, Maciej M.;
Krachunov, Milko;
Kreil, David P.;
Kulev, Ognyan;
Łabaj, Paweł P.;
Lampa, Samuel;
Pireddu, Luca;
Schönherr, Sebastian;
Siretskiy, Alexey;
Vassilev, Dimitar

Publication type:

Article

Experiences with workflows for automating data-intensive bioinformatics.

Published in:

Biology Direct, 2015, v. 10, n. 1, p. 43, doi. 10.1186/s13062-015-0071-8

By:

Spjuth, Ola;
Bongcam-Rudloff, Erik;
Carrasco Hernández, Guillermo;
Forer, Lukas;
Giovacchini, Mario;
Guimera, Roman Valls;
Kallio, Aleksi;
Korpelainen, Eija;
Kańduła, Maciej M.;
Krachunov, Milko;
Kreil, David P.;
Kulev, Ognyan;
Łabaj, Paweł P.;
Lampa, Samuel;
Pireddu, Luca;
Schönherr, Sebastian;
Siretskiy, Alexey;
Vassilev, Dimitar

Publication type:

Article

Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets.

Published in:

Briefings in Bioinformatics, 2009, v. 10, n. 5, p. 547, doi. 10.1093/bib/bbp033

By:

Elo, Laura L.;
Hiissa, Jukka;
Tuimala, Jarno;
Kallio, Aleksi;
Korpelainen, Eija;
Aittokallio, Tero

Publication type:

Article

Experience using web services for biological sequence analysis.

Published in:

Briefings in Bioinformatics, 2008, v. 9, n. 6, p. 493, doi. 10.1093/bib/bbn029

By:

Stockinger, Heinz;
Attwood, Teresa;
Nadeem Chohan, Shahid;
Côté, Richard;
Cudré-Mauroux, Philippe;
Falquet, Laurent;
Fernandes, Pedro;
Finn, Robert D.;
Hupponen, Taavi;
Korpelainen, Eija;
Labarga, Alberto;
Laugraud, Aurelie;
Lima, Tania;
Pafilis, Evangelos;
Pagni, Marco;
Pettifer, Steve;
Phan, Isabelle;
Rahman, Nazim

Publication type:

Article

Endothelial receptor tyrosine kinases activate the STAT signaling pathway: mutant Tie-2 causing venous malformations signals a distinct STAT activation response.

Published in:

Oncogene, 1999, v. 18, n. 1, p. 1, doi. 10.1038/sj.onc.1202288

By:

Korpelainen, Eija I;
Kärkkäinen, Marika;
Gunji, Yuji;
Vikkula, Miikka;
Alitalo, Kari

Publication type:

Article

IL-3 receptor expression, regulation and function in cells of the vasculature.

Published in:

Immunology & Cell Biology, 1996, v. 74, n. 1, p. 1, doi. 10.1038/icb.1996.1

By:

Korpelainen, Eija I.;
Gamble, Jennifer R.;
Vadas, Mathew A.;
Lopez, Angel F.

Publication type:

Article

Employees' choices in learning how to use information and communication technology systems at work: strategies and approaches.

Published in:

International Journal of Training & Development, 2010, v. 14, n. 1, p. 32, doi. 10.1111/j.1468-2419.2009.00339.x

By:

Korpelainen, Eija;
Kira, Mari

Publication type:

Article

PDB_REDO: automated re-refinement of X-ray structure models in the PDB.

Published in:

Journal of Applied Crystallography, 2009, v. 42, n. 3, p. 376, doi. 10.1107/S0021889809008784

By:

Joosten, Robbie P.;
Salzemann, Jean;
Bloch, Vincent;
Stockinger, Heinz;
Berglund, Ann-Charlott;
Blanchet, Christophe;
Bongcam-Rudloff, Erik;
Combet, Christophe;
Da Costa, Ana L.;
Deleage, Gilbert;
Diarena, Matteo;
Fabbretti, Roberto;
Fettahi, Géraldine;
Flegel, Volker;
Gisel, Andreas;
Kasam, Vinod;
Kervinen, Timo;
Korpelainen, Eija;
Mattila, Kimmo;
Pagni, Marco

Publication type:

Article

Self-Determined Adoption of an ICT System in a Work Organization.

Published in:

Journal of Organizational & End User Computing, 2010, v. 22, n. 4, p. 51, doi. 10.4018/joeuc.2010100103

By:

Korpelainen, Eija;
Vartiainen, Matti;
Kira, Mari

Publication type:

Article

Systems approach for analysing problems in IT system adoption at work.

Published in:

Behaviour & Information Technology, 2013, v. 32, n. 3, p. 247, doi. 10.1080/0144929X.2011.624638

By:

Korpelainen, Eija;
Kira, Mari

Publication type:

Article

A framework to assess the quality and impact of bioinformatics training across ELIXIR.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 7, p. 1, doi. 10.1371/journal.pcbi.1007976

By:

Gurwitz, Kim T.;
Singh Gaur, Prakash;
Bellis, Louisa J.;
Larcombe, Lee;
Alloza, Eva;
Balint, Balint Laszlo;
Botzki, Alexander;
Dimec, Jure;
Dominguez del Angel, Victoria;
Fernandes, Pedro L.;
Korpelainen, Eija;
Krause, Roland;
Kuzak, Mateusz;
Le Pera, Loredana;
Leskošek, Brane;
Lindvall, Jessica M.;
Marek, Diana;
Martinez, Paula A.;
Muyldermans, Tuur;
Nygård, Ståle

Publication type:

Article

Recommendations on e-infrastructures for next-generation sequencing.

Published in:

GigaScience, 2016, v. 5, p. 1, doi. 10.1186/s13742-016-0132-7

By:

Spjuth, Ola;
Bongcam-Rudloff, Erik;
Dahlberg, Johan;
Dahlö, Martin;
Kallio, Aleksi;
Pireddu, Luca;
Vezzi, Francesco;
Korpelainen, Eija

Publication type:

Article

Optimized detection of transcription factor-binding sites in ChIP-seq experiments.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 1, p. 1, doi. 10.1093/nar/gkr839

By:

Elo, Laura L.;
Kallio, Aleksi;
Laajala, Teemu D.;
Hawkins, R. David;
Korpelainen, Eija;
Aittokallio, Tero

Publication type:

Article

PairsDB atlas of protein sequence space.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D276, doi. 10.1093/nar/gkm879

By:

Heger, Andreas;
Korpelainen, Eija;
Hupponen, Taavi;
Mattila, Kimmo;
Ollikainen, Vesa;
Holm, Liisa

Publication type:

Article