Works by Korkola, James E.

Results: 27

Identification of a robust gene signature that predicts breast cancer outcome in independent data sets.

Published in:

BMC Cancer, 2007, v. 7, p. 61, doi. 10.1186/1471-2407-7-61

By:

Korkola, James E.;
Blaveri, Ekaterina;
DeVries, Sandy;
Moore II, Dan H.;
Hwang, E. Shelley;
Yunn-Yi Chen;
Estep, Anne L.H.;
Chew, Karen L.;
Jensen, Ronald H.;
Waldman, Frederic M.

Publication type:

Article

Exome Sequencing of Cell-Free DNA from Metastatic Cancer Patients Identifies Clinically Actionable Mutations Distinct from Primary Disease.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0136407

By:

Butler, Timothy M.;
Johnson-Camacho, Katherine;
Peto, Myron;
Wang, Nicholas J.;
Macey, Tara A.;
Korkola, James E.;
Koppie, Theresa M.;
Corless, Christopher L.;
Gray, Joe W.;
Spellman, Paul T.

Publication type:

Article

Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0133219

By:

Korkola, James E.;
Collisson, Eric A.;
Heiser, Laura;
Oates, Chris;
Bayani, Nora;
Itani, Sleiman;
Esch, Amanda;
Thompson, Wallace;
Griffith, Obi L.;
Wang, Nicholas J.;
Kuo, Wen-Lin;
Cooper, Brian;
Billig, Jessica;
Ziyad, Safiyyah;
Hung, Jenny L.;
Jakkula, Lakshmi;
Feiler, Heidi;
Lu, Yiling;
Mills, Gordon B.;
Spellman, Paul T.

Publication type:

Article

An altered extracellular matrix–integrin interface contributes to Huntington's disease-associated CNS dysfunction in glial and vascular cells.

Published in:

Human Molecular Genetics, 2023, v. 32, n. 9, p. 1483, doi. 10.1093/hmg/ddac303

By:

Hernandez, Sarah J;
Lim, Ryan G;
Onur, Tarik;
Dane, Mark A;
Smith, Rebecca;
Wang, Keona;
Jean, Grace En-Hway;
Reyes-Ortiz, Andrea;
Devlin, Kaylyn;
Miramontes, Ricardo;
Wu, Jie;
Casale, Malcolm;
Kilburn, David;
Heiser, Laura M;
Korkola, James E;
Vactor, David Van;
Botas, Juan;
Thompson-Peer, Katherine L;
Thompson, Leslie M

Publication type:

Article

Computational drug repositioning for the identification of new agents to sensitize drug-resistant breast tumors across treatments and receptor subtypes.

Published in:

Frontiers in Oncology, 2023, p. 1, doi. 10.3389/fonc.2023.1192208

By:

Yu, Katharine;
Basu, Amrita;
Yau, Christina;
Wolf, Denise M.;
Goodarzi, Hani;
Bandyopadhyay, Sourav;
Korkola, James E.;
Hirst, Gillian L.;
Asare, Smita;
DeMichele, Angela;
Hylton, Nola;
Yee, Douglas;
Esserman, Laura;
Veer, Laura van't;
Sirota, Marina

Publication type:

Article

Correction: Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer.

Published in:

2017

By:

Korkola, James E.;
Collisson, Eric A.;
Heiser, Laura M.;
Oates, Chris;
Bayani, Nora;
Itani, Sleiman;
Esch, Amanda;
Thompson, Wallace;
Griffith, Obi L.;
Wang, Nicholas J.;
Kuo, Wen-Lin;
Cooper, Brian;
Billig, Jessica;
Ziyad, Safiyyah;
Hung, Jenny L.;
Jakkula, Lakshmi;
Feiler, Heidi;
Lu, Yiling;
Mills, Gordon B.;
Spellman, Paul T.

Publication type:

Correction Notice

Enzalutamide response in a panel of prostate cancer cell lines reveals a role for glucocorticoid receptor in enzalutamide resistant disease.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-78798-x

By:

Smith, Rebecca;
Liu, Moqing;
Liby, Tiera;
Bayani, Nora;
Bucher, Elmar;
Chiotti, Kami;
Derrick, Daniel;
Chauchereau, Anne;
Heiser, Laura;
Alumkal, Joshi;
Feiler, Heidi;
Carroll, Peter;
Korkola, James E.

Publication type:

Article

Cyclin D1 is necessary but not sufficient for anchorage-independent growth of rat mammary tumor cells and is associated with resistance of the Copenhagen rat to mammary carcinogenesis.

Published in:

Oncogene, 2003, v. 22, n. 22, p. 3452, doi. 10.1038/sj.onc.1206411

By:

Li, You-Jun;
Song, Runlan;
Korkola, James E;
Archer, Michael C;
Ben-David, Yaacov

Publication type:

Article

Urinary Comprehensive Genomic Profiling Correlates Urothelial Carcinoma Mutations with Clinical Risk and Efficacy of Intervention.

Published in:

Journal of Clinical Medicine, 2022, v. 11, n. 19, p. 5827, doi. 10.3390/jcm11195827

By:

Bicocca, Vincent T.;
Phillips, Kevin G.;
Fischer, Daniel S.;
Caruso, Vincent M.;
Goudarzi, Mahdi;
Garcia-Ransom, Monica;
Lentz, Peter S.;
MacBride, Andrew R.;
Jensen, Brad W.;
Mazzarella, Brian C.;
Koppie, Theresa;
Korkola, James E.;
Gray, Joe W.;
Levin, Trevor G.

Publication type:

Article

Molecular events in germ cell tumours: linking chromosome-12 gain, acquisition of pluripotency and response to cisplatin.

Published in:

BJU International, 2009, v. 104, n. 9B, p. 1334, doi. 10.1111/j.1464-410X.2009.08855.x

By:

Korkola, James E.;
Houldsworth, Jane;
Bosl, George J.;
Chaganti, R. S. K.

Publication type:

Article

Gene expression-based classification of nonseminomatous male germ cell tumors.

Published in:

Oncogene, 2005, v. 24, n. 32, p. 5101, doi. 10.1038/sj.onc.1208694

By:

Korkola, James E.;
Houldsworth, Jane;
Dobrzynski, Debbie;
Olshen, Adam B.;
Reuter, Victor E.;
Bosl, George J.;
Chaganti, R. S. K.

Publication type:

Article

Development and Validation of a Gene-Based Model for Outcome Prediction in Germ Cell Tumors Using a Combined Genomic and Expression Profiling Approach.

Published in:

PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0142846

By:

Korkola, James E.;
Heck, Sandy;
Olshen, Adam B.;
Feldman, Darren R.;
Reuter, Victor E.;
Houldsworth, Jane;
Bosl, George J.;
Chaganti, R. S. K.

Publication type:

Article

Modeling precision treatment of breast cancer.

Published in:

Genome Biology, 2013, v. 14, n. 10, p. R110, doi. 10.1186/gb-2013-14-10-r110

By:

Daemen, Anneleen;
Griffith, Obi L;
Heiser, Laura M;
Wang, Nicholas J;
Enache, Oana M;
Sanborn, Zachary;
Pepin, Francois;
Durinck, Steffen;
Korkola, James E;
Griffith, Malachi;
Joe S Hur;
Nam Huh;
Jongsuk Chung;
Cope, Leslie;
Fackler, Mary Jo;
Umbricht, Christopher;
Sukumar, Saraswati;
Seth, Pankaj;
Sukhatme, Vikas P;
Jakkula, Lakshmi R

Publication type:

Article

Erratum to: Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer.

Published in:

2017

By:

Hu, Zhi;
Mao, Jian-Hua;
Curtis, Christina;
Huang, Ge;
Gu, Shenda;
Heiser, Laura;
Lenburg, Marc E;
Korkola, James E;
Bayani, Nora;
Samarajiwa, Shamith;
Seoane, Jose A;
Dane, Mark A;
Esch, Amanda;
Feiler, Heidi S;
Wang, Nicholas J;
Hardwicke, Mary Ann;
Laquerre, Sylvie;
Jackson, Jeff;
Wood, Kenneth W;
Weber, Barbara

Publication type:

journal article

Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer.

Published in:

2016

By:

Zhi Hu;
Jian-Hua Mao;
Curtis, Christina;
Ge Huang;
Shenda Gu;
Heiser, Laura;
Lenburg, Marc E.;
Korkola, James E.;
Bayani, Nora;
Samarajiwa, Shamith;
Seoane, Jose A.;
Dane, Mark A.;
Esch, Amanda;
Feiler, Heidi S.;
Wang, Nicholas J.;
Hardwicke, Mary Ann;
Laquerre, Sylvie;
Jackson, Jeff;
Wood, Kenneth W.;
Weber, Barbara

Publication type:

journal article

Systematic replication enables normalization of high-throughput imaging assays.

Published in:

Bioinformatics, 2022, v. 38, n. 21, p. 4934, doi. 10.1093/bioinformatics/btac606

By:

Hunt, Gregory J;
Dane, Mark A;
Korkola, James E;
Heiser, Laura M;
Gagnon-Bartsch, Johann A

Publication type:

Article

Tissue-specific resistance to cancer development in the rat: phenotypes of tumor-modifier genes.

Published in:

Carcinogenesis, 2002, v. 23, n. 1, p. 1, doi. 10.1093/carcin/23.1.1

By:

Wood, Geoffrey A.;
Korkola, James E.;
Archer, Michael C.

Publication type:

Article

Resistance of Copenhagen rats to hepatocarcinogenesis does not involve T-cell immunity.

Published in:

Carcinogenesis, 2001, v. 22, n. 2, p. 357, doi. 10.1093/carcin/22.2.357

By:

Wood, Geoffrey A.;
Korkola, James E.;
Archer, Michael C.

Publication type:

Article

Automatic Transformation and Integration to Improve Visualization and Discovery of Latent Effects in Imaging Data.

Published in:

Journal of Computational & Graphical Statistics, 2020, v. 29, n. 4, p. 929, doi. 10.1080/10618600.2020.1741379

By:

Hunt, Gregory J.;
Dane, Mark A.;
Korkola, James E.;
Heiser, Laura M.;
Gagnon-Bartsch, Johann A.

Publication type:

Article

INHBA is a mediator of aggressive tumor behavior in HER2+ basal breast cancer.

Published in:

Breast Cancer Research, 2022, v. 24, n. 1, p. 1, doi. 10.1186/s13058-022-01512-4

By:

Liu, Moqing;
Smith, Rebecca;
Liby, Tiera;
Chiotti, Kami;
López, Claudia S.;
Korkola, James E.

Publication type:

Article

Sensitivity to targeted therapy differs between HER2-amplified breast cancer cells harboring kinase and helical domain mutations in PIK3CA.

Published in:

2021

By:

Garay, Joseph P.;
Smith, Rebecca;
Devlin, Kaylyn;
Hollern, Daniel P.;
Liby, Tiera;
Liu, Moqing;
Boddapati, Shanta;
Watson, Spencer S.;
Esch, Amanda;
Zheng, Ting;
Thompson, Wallace;
Babcock, Darcie;
Kwon, Sunjong;
Chin, Koei;
Heiser, Laura;
Gray, Joe W.;
Korkola, James E.

Publication type:

journal article

Interrogation of a Context-Specific Transcription Factor Network Identifies Novel Regulators of Pluripotency.

Published in:

Stem Cells, 2015, v. 33, n. 2, p. 367, doi. 10.1002/stem.1870

By:

Kushwaha, Ritu;
Jagadish, Nirmala;
Kustagi, Manjunath;
Tomishima, Mark J.;
Mendiratta, Geetu;
Bansal, Mukesh;
Kim, Hyunjae R.;
Sumazin, Pavel;
Alvarez, Mariano J.;
Lefebvre, Celine;
Villagrasa-Gonzalez, Patricia;
Viale, Agnes;
Korkola, James E.;
Houldsworth, Jane;
Feldman, Darren R.;
Bosl, George J.;
Califano, Andrea;
Chaganti, R. S. K.

Publication type:

Article

A Genetic Strategy for Single and Combinatorial Analysis of miRNA Function in Mammalian Hematopoietic Stem Cells.

Published in:

Stem Cells, 2010, v. 28, n. 2, p. 287, doi. 10.1002/stem.257

By:

PAPAPETROU, EIRINI P.;
KORKOLA, JAMES E.;
SADELAIN, MICHEL

Publication type:

Article

Constitutive Gene Expression Predisposes Morphogen-Mediated Cell Fate Responses of NT2/D1 and 27X-1 Human Embryonal Carcinoma Cells.

Published in:

Stem Cells, 2007, v. 25, n. 3, p. 771, doi. 10.1634/stemcells.2006-0271

By:

Chadalavada, Rajendrakumar S. V.;
Korkola, James E.;
Houldsworth, Jane;
Olshen, Adam B.;
Bosl, George J.;
Studer, Lorenz;
Chaganti, R. S. K.

Publication type:

Article

Annot: a Django-based sample, reagent, and experiment metadata tracking system.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3147-0

By:

Bucher, Elmar;
Claunch, Cheryl J.;
Hee, Derrick;
Smith, Rebecca L.;
Devlin, Kaylyn;
Thompson, Wallace;
Korkola, James E.;
Heiser, Laura M.

Publication type:

Article

A multiplex implantable microdevice assay identifies synergistic combinations of cancer immunotherapies and conventional drugs.

Published in:

Nature Biotechnology, 2022, v. 40, n. 12, p. 1823, doi. 10.1038/s41587-022-01379-y

By:

Tatarova, Zuzana;
Blumberg, Dylan C.;
Korkola, James E.;
Heiser, Laura M.;
Muschler, John L.;
Schedin, Pepper J.;
Ahn, Sebastian W.;
Mills, Gordon B.;
Coussens, Lisa M.;
Jonas, Oliver;
Gray, Joe W.

Publication type:

Article

Cellular senescence in cancer: from mechanisms to detection.

Published in:

Molecular Oncology, 2021, v. 15, n. 10, p. 2634, doi. 10.1002/1878-0261.12807

By:

Hui-Ling Ou;
Hoffmann, Reuben;
González-López, Cristina;
Doherty, Gary J.;
Korkola, James E.;
Muñoz-Espín, Daniel

Publication type:

Article