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Molecular events in germ cell tumours: linking chromosome-12 gain, acquisition of pluripotency and response to cisplatin.
Published in:
BJU International, 2009, v. 104, n. 9B, p. 1334, doi. 10.1111/j.1464-410X.2009.08855.x
By:
- Korkola, James E.;
- Houldsworth, Jane;
- Bosl, George J.;
- Chaganti, R. S. K.
Publication type:
Article
Computational drug repositioning for the identification of new agents to sensitize drug-resistant breast tumors across treatments and receptor subtypes.
Published in:
Frontiers in Oncology, 2023, p. 1, doi. 10.3389/fonc.2023.1192208
By:
- Yu, Katharine;
- Basu, Amrita;
- Yau, Christina;
- Wolf, Denise M.;
- Goodarzi, Hani;
- Bandyopadhyay, Sourav;
- Korkola, James E.;
- Hirst, Gillian L.;
- Asare, Smita;
- DeMichele, Angela;
- Hylton, Nola;
- Yee, Douglas;
- Esserman, Laura;
- Veer, Laura van't;
- Sirota, Marina
Publication type:
Article
A multiplex implantable microdevice assay identifies synergistic combinations of cancer immunotherapies and conventional drugs.
Published in:
Nature Biotechnology, 2022, v. 40, n. 12, p. 1823, doi. 10.1038/s41587-022-01379-y
By:
- Tatarova, Zuzana;
- Blumberg, Dylan C.;
- Korkola, James E.;
- Heiser, Laura M.;
- Muschler, John L.;
- Schedin, Pepper J.;
- Ahn, Sebastian W.;
- Mills, Gordon B.;
- Coussens, Lisa M.;
- Jonas, Oliver;
- Gray, Joe W.
Publication type:
Article
Interrogation of a Context-Specific Transcription Factor Network Identifies Novel Regulators of Pluripotency.
Published in:
Stem Cells, 2015, v. 33, n. 2, p. 367, doi. 10.1002/stem.1870
By:
- Kushwaha, Ritu;
- Jagadish, Nirmala;
- Kustagi, Manjunath;
- Tomishima, Mark J.;
- Mendiratta, Geetu;
- Bansal, Mukesh;
- Kim, Hyunjae R.;
- Sumazin, Pavel;
- Alvarez, Mariano J.;
- Lefebvre, Celine;
- Villagrasa-Gonzalez, Patricia;
- Viale, Agnes;
- Korkola, James E.;
- Houldsworth, Jane;
- Feldman, Darren R.;
- Bosl, George J.;
- Califano, Andrea;
- Chaganti, R. S. K.
Publication type:
Article
A Genetic Strategy for Single and Combinatorial Analysis of miRNA Function in Mammalian Hematopoietic Stem Cells.
Published in:
Stem Cells, 2010, v. 28, n. 2, p. 287, doi. 10.1002/stem.257
By:
- PAPAPETROU, EIRINI P.;
- KORKOLA, JAMES E.;
- SADELAIN, MICHEL
Publication type:
Article
Constitutive Gene Expression Predisposes Morphogen-Mediated Cell Fate Responses of NT2/D1 and 27X-1 Human Embryonal Carcinoma Cells.
Published in:
Stem Cells, 2007, v. 25, n. 3, p. 771, doi. 10.1634/stemcells.2006-0271
By:
- Chadalavada, Rajendrakumar S. V.;
- Korkola, James E.;
- Houldsworth, Jane;
- Olshen, Adam B.;
- Bosl, George J.;
- Studer, Lorenz;
- Chaganti, R. S. K.
Publication type:
Article
Systematic replication enables normalization of high-throughput imaging assays.
Published in:
Bioinformatics, 2022, v. 38, n. 21, p. 4934, doi. 10.1093/bioinformatics/btac606
By:
- Hunt, Gregory J;
- Dane, Mark A;
- Korkola, James E;
- Heiser, Laura M;
- Gagnon-Bartsch, Johann A
Publication type:
Article
INHBA is a mediator of aggressive tumor behavior in HER2+ basal breast cancer.
Published in:
Breast Cancer Research, 2022, v. 24, n. 1, p. 1, doi. 10.1186/s13058-022-01512-4
By:
- Liu, Moqing;
- Smith, Rebecca;
- Liby, Tiera;
- Chiotti, Kami;
- López, Claudia S.;
- Korkola, James E.
Publication type:
Article
Sensitivity to targeted therapy differs between HER2-amplified breast cancer cells harboring kinase and helical domain mutations in PIK3CA.
Published in:
2021
By:
- Garay, Joseph P.;
- Smith, Rebecca;
- Devlin, Kaylyn;
- Hollern, Daniel P.;
- Liby, Tiera;
- Liu, Moqing;
- Boddapati, Shanta;
- Watson, Spencer S.;
- Esch, Amanda;
- Zheng, Ting;
- Thompson, Wallace;
- Babcock, Darcie;
- Kwon, Sunjong;
- Chin, Koei;
- Heiser, Laura;
- Gray, Joe W.;
- Korkola, James E.
Publication type:
journal article
Development and Validation of a Gene-Based Model for Outcome Prediction in Germ Cell Tumors Using a Combined Genomic and Expression Profiling Approach.
Published in:
PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0142846
By:
- Korkola, James E.;
- Heck, Sandy;
- Olshen, Adam B.;
- Feldman, Darren R.;
- Reuter, Victor E.;
- Houldsworth, Jane;
- Bosl, George J.;
- Chaganti, R. S. K.
Publication type:
Article
Exome Sequencing of Cell-Free DNA from Metastatic Cancer Patients Identifies Clinically Actionable Mutations Distinct from Primary Disease.
Published in:
PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0136407
By:
- Butler, Timothy M.;
- Johnson-Camacho, Katherine;
- Peto, Myron;
- Wang, Nicholas J.;
- Macey, Tara A.;
- Korkola, James E.;
- Koppie, Theresa M.;
- Corless, Christopher L.;
- Gray, Joe W.;
- Spellman, Paul T.
Publication type:
Article
Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer.
Published in:
PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0133219
By:
- Korkola, James E.;
- Collisson, Eric A.;
- Heiser, Laura;
- Oates, Chris;
- Bayani, Nora;
- Itani, Sleiman;
- Esch, Amanda;
- Thompson, Wallace;
- Griffith, Obi L.;
- Wang, Nicholas J.;
- Kuo, Wen-Lin;
- Cooper, Brian;
- Billig, Jessica;
- Ziyad, Safiyyah;
- Hung, Jenny L.;
- Jakkula, Lakshmi;
- Feiler, Heidi;
- Lu, Yiling;
- Mills, Gordon B.;
- Spellman, Paul T.
Publication type:
Article
Urinary Comprehensive Genomic Profiling Correlates Urothelial Carcinoma Mutations with Clinical Risk and Efficacy of Intervention.
Published in:
Journal of Clinical Medicine, 2022, v. 11, n. 19, p. 5827, doi. 10.3390/jcm11195827
By:
- Bicocca, Vincent T.;
- Phillips, Kevin G.;
- Fischer, Daniel S.;
- Caruso, Vincent M.;
- Goudarzi, Mahdi;
- Garcia-Ransom, Monica;
- Lentz, Peter S.;
- MacBride, Andrew R.;
- Jensen, Brad W.;
- Mazzarella, Brian C.;
- Koppie, Theresa;
- Korkola, James E.;
- Gray, Joe W.;
- Levin, Trevor G.
Publication type:
Article
Gene expression-based classification of nonseminomatous male germ cell tumors.
Published in:
Oncogene, 2005, v. 24, n. 32, p. 5101, doi. 10.1038/sj.onc.1208694
By:
- Korkola, James E.;
- Houldsworth, Jane;
- Dobrzynski, Debbie;
- Olshen, Adam B.;
- Reuter, Victor E.;
- Bosl, George J.;
- Chaganti, R. S. K.
Publication type:
Article
Cyclin D1 is necessary but not sufficient for anchorage-independent growth of rat mammary tumor cells and is associated with resistance of the Copenhagen rat to mammary carcinogenesis.
Published in:
Oncogene, 2003, v. 22, n. 22, p. 3452, doi. 10.1038/sj.onc.1206411
By:
- Li, You-Jun;
- Song, Runlan;
- Korkola, James E;
- Archer, Michael C;
- Ben-David, Yaacov
Publication type:
Article
Erratum to: Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer.
Published in:
2017
By:
- Hu, Zhi;
- Mao, Jian-Hua;
- Curtis, Christina;
- Huang, Ge;
- Gu, Shenda;
- Heiser, Laura;
- Lenburg, Marc E;
- Korkola, James E;
- Bayani, Nora;
- Samarajiwa, Shamith;
- Seoane, Jose A;
- Dane, Mark A;
- Esch, Amanda;
- Feiler, Heidi S;
- Wang, Nicholas J;
- Hardwicke, Mary Ann;
- Laquerre, Sylvie;
- Jackson, Jeff;
- Wood, Kenneth W;
- Weber, Barbara
Publication type:
journal article
Cellular senescence in cancer: from mechanisms to detection.
Published in:
Molecular Oncology, 2021, v. 15, n. 10, p. 2634, doi. 10.1002/1878-0261.12807
By:
- Hui-Ling Ou;
- Hoffmann, Reuben;
- González-López, Cristina;
- Doherty, Gary J.;
- Korkola, James E.;
- Muñoz-Espín, Daniel
Publication type:
Article
Tissue-specific resistance to cancer development in the rat: phenotypes of tumor-modifier genes.
Published in:
Carcinogenesis, 2002, v. 23, n. 1, p. 1, doi. 10.1093/carcin/23.1.1
By:
- Wood, Geoffrey A.;
- Korkola, James E.;
- Archer, Michael C.
Publication type:
Article
Resistance of Copenhagen rats to hepatocarcinogenesis does not involve T-cell immunity.
Published in:
Carcinogenesis, 2001, v. 22, n. 2, p. 357, doi. 10.1093/carcin/22.2.357
By:
- Wood, Geoffrey A.;
- Korkola, James E.;
- Archer, Michael C.
Publication type:
Article
Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer.
Published in:
2016
By:
- Zhi Hu;
- Jian-Hua Mao;
- Curtis, Christina;
- Ge Huang;
- Shenda Gu;
- Heiser, Laura;
- Lenburg, Marc E.;
- Korkola, James E.;
- Bayani, Nora;
- Samarajiwa, Shamith;
- Seoane, Jose A.;
- Dane, Mark A.;
- Esch, Amanda;
- Feiler, Heidi S.;
- Wang, Nicholas J.;
- Hardwicke, Mary Ann;
- Laquerre, Sylvie;
- Jackson, Jeff;
- Wood, Kenneth W.;
- Weber, Barbara
Publication type:
journal article
Annot: a Django-based sample, reagent, and experiment metadata tracking system.
Published in:
BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3147-0
By:
- Bucher, Elmar;
- Claunch, Cheryl J.;
- Hee, Derrick;
- Smith, Rebecca L.;
- Devlin, Kaylyn;
- Thompson, Wallace;
- Korkola, James E.;
- Heiser, Laura M.
Publication type:
Article
An altered extracellular matrix–integrin interface contributes to Huntington's disease-associated CNS dysfunction in glial and vascular cells.
Published in:
Human Molecular Genetics, 2023, v. 32, n. 9, p. 1483, doi. 10.1093/hmg/ddac303
By:
- Hernandez, Sarah J;
- Lim, Ryan G;
- Onur, Tarik;
- Dane, Mark A;
- Smith, Rebecca;
- Wang, Keona;
- Jean, Grace En-Hway;
- Reyes-Ortiz, Andrea;
- Devlin, Kaylyn;
- Miramontes, Ricardo;
- Wu, Jie;
- Casale, Malcolm;
- Kilburn, David;
- Heiser, Laura M;
- Korkola, James E;
- Vactor, David Van;
- Botas, Juan;
- Thompson-Peer, Katherine L;
- Thompson, Leslie M
Publication type:
Article
Modeling precision treatment of breast cancer.
Published in:
Genome Biology, 2013, v. 14, n. 10, p. R110, doi. 10.1186/gb-2013-14-10-r110
By:
- Daemen, Anneleen;
- Griffith, Obi L;
- Heiser, Laura M;
- Wang, Nicholas J;
- Enache, Oana M;
- Sanborn, Zachary;
- Pepin, Francois;
- Durinck, Steffen;
- Korkola, James E;
- Griffith, Malachi;
- Joe S Hur;
- Nam Huh;
- Jongsuk Chung;
- Cope, Leslie;
- Fackler, Mary Jo;
- Umbricht, Christopher;
- Sukumar, Saraswati;
- Seth, Pankaj;
- Sukhatme, Vikas P;
- Jakkula, Lakshmi R
Publication type:
Article
Enzalutamide response in a panel of prostate cancer cell lines reveals a role for glucocorticoid receptor in enzalutamide resistant disease.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-78798-x
By:
- Smith, Rebecca;
- Liu, Moqing;
- Liby, Tiera;
- Bayani, Nora;
- Bucher, Elmar;
- Chiotti, Kami;
- Derrick, Daniel;
- Chauchereau, Anne;
- Heiser, Laura;
- Alumkal, Joshi;
- Feiler, Heidi;
- Carroll, Peter;
- Korkola, James E.
Publication type:
Article
Correction: Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer.
Published in:
2017
By:
- Korkola, James E.;
- Collisson, Eric A.;
- Heiser, Laura M.;
- Oates, Chris;
- Bayani, Nora;
- Itani, Sleiman;
- Esch, Amanda;
- Thompson, Wallace;
- Griffith, Obi L.;
- Wang, Nicholas J.;
- Kuo, Wen-Lin;
- Cooper, Brian;
- Billig, Jessica;
- Ziyad, Safiyyah;
- Hung, Jenny L.;
- Jakkula, Lakshmi;
- Feiler, Heidi;
- Lu, Yiling;
- Mills, Gordon B.;
- Spellman, Paul T.
Publication type:
Correction Notice
Identification of a robust gene signature that predicts breast cancer outcome in independent data sets.
Published in:
BMC Cancer, 2007, v. 7, p. 61, doi. 10.1186/1471-2407-7-61
By:
- Korkola, James E.;
- Blaveri, Ekaterina;
- DeVries, Sandy;
- Moore II, Dan H.;
- Hwang, E. Shelley;
- Yunn-Yi Chen;
- Estep, Anne L.H.;
- Chew, Karen L.;
- Jensen, Ronald H.;
- Waldman, Frederic M.
Publication type:
Article

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