Works matching AU Konstantinidis, Konstantinos T.

Results: 96

Ecological success of extreme halophiles subjected to recurrent osmotic disturbances is primarily driven by congeneric species replacement.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae215

By:

Bustos-Caparros, Esteban;
Viver, Tomeu;
Gago, Juan F;
Rodriguez-R, Luis M;
Hatt, Janet K;
Venter, Stephanus N;
Fuchs, Bernhard M;
Amann, Rudolf;
Bosch, Rafael;
Konstantinidis, Konstantinos T;
Rossello-Mora, Ramon

Publication type:

Article

Experimental evolution at ecological scales allows linking of viral genotypes to specific host strains.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae208

By:

Ramos-Barbero, María Dolores;
Aldeguer-Riquelme, Borja;
Viver, Tomeu;
Villamor, Judith;
Carrillo-Bautista, Miryam;
López-Pascual, Cristina;
Konstantinidis, Konstantinos T;
Martínez-García, Manuel;
Santos, Fernando;
Rossello-Mora, Ramon;
Antón, Josefa

Publication type:

Article

Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.

Published in:

Bioinformatics, 2014, v. 30, n. 5, p. 629, doi. 10.1093/bioinformatics/btt584

By:

Rodriguez-R, Luis M.;
Konstantinidis, Konstantinos T.

Publication type:

Article

Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming.

Published in:

Nature Climate Change, 2016, v. 6, n. 6, p. 595, doi. 10.1038/nclimate2940

By:

Xue, Kai;
M. Yuan, Mengting;
J. Shi, Zhou;
Qin, Yujia;
Deng, Ye;
Cheng, Lei;
Wu, Liyou;
He, Zhili;
Van Nostrand, Joy D.;
Bracho, Rosvel;
Natali, Susan;
Schuur, Edward. A. G.;
Luo, Chengwei;
Konstantinidis, Konstantinos T.;
Wang, Qiong;
Cole, James R.;
Tiedje, James M.;
Luo, Yiqi;
Zhou, Jizhong

Publication type:

Article

Rapid changes in coastal ocean microbiomes uncoupled with shifts in environmental variables.

Published in:

Environmental Microbiology, 2022, v. 24, n. 9, p. 4167, doi. 10.1111/1462-2920.16086

By:

Gronniger, Jessica L.;
Wang, Zhao;
Brandt, Genevieve R.;
Ward, Christopher S.;
Tsementzi, Despina;
Mu, Han;
Gu, Junyao;
Johnson, Zackary I.;
Konstantinidis, Konstantinos T.;
Hunt, Dana E.

Publication type:

Article

The influence of alfalfa‐switchgrass intercropping on microbial community structure and function.

Published in:

Environmental Microbiology, 2021, v. 23, n. 11, p. 6828, doi. 10.1111/1462-2920.15785

By:

Cha, Gyuhyon;
Meinhardt, Kelley A.;
Orellana, Luis H.;
Hatt, Janet K.;
Pannu, Manmeet W.;
Stahl, David A.;
Konstantinidis, Konstantinos T.

Publication type:

Article

Iterative subtractive binning of freshwater chronoseries metagenomes identifies over 400 novel species and their ecologic preferences.

Published in:

Environmental Microbiology, 2020, v. 22, n. 8, p. 3394, doi. 10.1111/1462-2920.15112

By:

Rodriguez‐R, Luis M.;
Tsementzi, Despina;
Luo, Chengwei;
Konstantinidis, Konstantinos T.

Publication type:

Article

Genome repository of oil systems: An interactive and searchable database that expands the catalogued diversity of crude oil‐associated microbes.

Published in:

Environmental Microbiology, 2020, v. 22, n. 6, p. 2094, doi. 10.1111/1462-2920.14966

By:

Karthikeyan, Smruthi;
Rodriguez‐R, Luis M.;
Heritier‐Robbins, Patrick;
Hatt, Janet K.;
Huettel, Markus;
Kostka, Joel E.;
Konstantinidis, Konstantinos T.

Publication type:

Article

Advantages outweigh concerns about using genome sequence as type material for prokaryotic taxonomy.

Published in:

Environmental Microbiology, 2020, v. 22, n. 3, p. 819, doi. 10.1111/1462-2920.14934

By:

Konstantinidis, Konstantinos T.;
Rosselló‐Móra, Ramon;
Amann, Rudolf

Publication type:

Article

Predominance of deterministic microbial community dynamics in salterns exposed to different light intensities.

Published in:

Environmental Microbiology, 2019, v. 21, n. 11, p. 4300, doi. 10.1111/1462-2920.14790

By:

Viver, Tomeu;
Orellana, Luis H.;
Díaz, Sara;
Urdiain, Mercedes;
Ramos‐Barbero, María Dolores;
González‐Pastor, José E.;
Oren, Aharon;
Hatt, Janet K.;
Amann, Rudolf;
Antón, Josefa;
Konstantinidis, Konstantinos T.;
Rosselló‐Móra, Ramon

Publication type:

Article

Intensive allochthonous inputs along the Ganges River and their effect on microbial community composition and dynamics.

Published in:

Environmental Microbiology, 2019, v. 21, n. 1, p. 182, doi. 10.1111/1462-2920.14439

By:

Zhang, Si‐Yu;
Tsementzi, Despina;
Hatt, Janet K.;
Bivins, Aaron;
Khelurkar, Nikunj;
Brown, Joe;
Tripathi, Sachchida Nand;
Konstantinidis, Konstantinos T.

Publication type:

Article

First complete genome sequence of a Salinivibrio member and phylogenomics of the whole genus.

Published in:

Studia Universitatis Babeş-Bolyai, Biologia, 2019, v. 64, n. 1, p. 33

By:

de la Haba, Rafael R.;
Lopez-Hermoso, Clara;
Sanchez-Porro, Cristina;
Konstantinidis, Konstantinos T.;
Ventosa, Antonio

Publication type:

Article

High resilience and resistance of solar saltern microbial assemblages exposed to different environmental pressures.

Published in:

Studia Universitatis Babeş-Bolyai, Biologia, 2019, v. 64, n. 1, p. 31

By:

Viver, Tomeu;
Orellana, Luis H.;
Diaz, Sara;
Urdiain, Mercedes;
Ramos-Barbero, María Dolores;
González-Pastor, Jose E.;
Oren, Aharon;
Amann, Rudolf;
Antón, Josefa;
Konstantinidis, Konstantinos T.;
Rosselló-Móra, Ramon

Publication type:

Article

Reply to: "Re-evaluating the evidence for a universal genetic boundary among microbial species".

Published in:

2021

By:

Rodriguez-R, Luis M.;
Jain, Chirag;
Conrad, Roth E.;
Aluru, Srinivas;
Konstantinidis, Konstantinos T.

Publication type:

Letter

Strengths and Limitations of 16S rRNA Gene Amplicon Sequencing in Revealing Temporal Microbial Community Dynamics.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0093827

By:

Poretsky, Rachel;
Rodriguez-R, Luis M.;
Luo, Chengwei;
Tsementzi, Despina;
Konstantinidis, Konstantinos T.

Publication type:

Article

Genomic Diversity of Escherichia Isolates from Diverse Habitats.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047005

By:

Oh, Seungdae;
Buddenborg, Sarah;
Yoder-Himes, Deborah R.;
Tiedje, James M.;
Konstantinidis, Konstantinos T.

Publication type:

Article

Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030087

By:

Luo, Chengwei;
Tsementzi, Despina;
Kyrpides, Nikos;
Read, Timothy;
Konstantinidis, Konstantinos T.

Publication type:

Article

Identification of Potential Therapeutic Targets for Burkholderia cenocepacia by Comparative Transcriptomics.

Published in:

PLoS ONE, 2010, v. 5, n. 1, p. 1, doi. 10.1371/journal.pone.0008724

By:

Yoder-Himes, Deborah R.;
Konstantinidis, Konstantinos T.;
Tiedje, James M.

Publication type:

Article

Using flow cytometry and light-induced fluorescence technique to characterizethe variability and characteristics of bioaerosols in springtime at Metro Atlanta, Georgia.

Published in:

Atmospheric Chemistry & Physics Discussions, 2018, p. 1, doi. 10.5194/acp-2018-1073

By:

Negron, Arnaldo;
DeLeon-Rodriguez, Natasha;
Waters, Samantha M.;
Ziemba, Luke D.;
Anderson, Bruce;
Bergin, Michael;
Konstantinidis, Konstantinos T.;
Nenes, Athanasios

Publication type:

Article

Comparison of closely related, uncultivated <italic>Coxiella</italic> tick endosymbiont population genomes reveals clues about the mechanisms of symbiosis.

Published in:

Environmental Microbiology, 2018, v. 20, n. 5, p. 1751, doi. 10.1111/1462-2920.14104

By:

Tsementzi, Despina;
Castro Gordillo, Juan;
Mahagna, Mustafa;
Gottlieb, Yuval;
Konstantinidis, Konstantinos T.

Publication type:

Article

The low diverse gastric microbiome of the jellyfish Cotylorhiza tuberculata is dominated by four novel taxa.

Published in:

Environmental Microbiology, 2017, v. 19, n. 8, p. 3039, doi. 10.1111/1462-2920.13763

By:

Viver, Tomeu;
Orellana, Luis H.;
Hatt, Janet K.;
Urdiain, Mercedes;
Díaz, Sara;
Richter, Michael;
Antón, Josefa;
Avian, Massimo;
Amann, Rudolf;
Konstantinidis, Konstantinos T.;
Rosselló ‐ Móra, Ramon

Publication type:

Article

Anthropogenic effects on bacterial diversity and function along a river-to-estuary gradient in Northwest Greece revealed by metagenomics.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4640, doi. 10.1111/1462-2920.13303

By:

Meziti, Alexandra;
Tsementzi, Despina;
Ar. Kormas, Konstantinos;
Karayanni, Hera;
Konstantinidis, Konstantinos T.

Publication type:

Article

Stability, genotypic and phenotypic diversity of S hewanella baltica in the redox transition zone of the Baltic Sea.

Published in:

Environmental Microbiology, 2014, v. 16, n. 6, p. 1854, doi. 10.1111/1462-2920.12344

By:

Deng, Jie;
Brettar, Ingrid;
Luo, Chengwei;
Auchtung, Jennifer;
Konstantinidis, Konstantinos T.;
Rodrigues, Jorge L. M.;
Höfle, Manfred;
Tiedje, James M.

Publication type:

Article

Do airborne microbes matter for atmospheric chemistry and cloud formation?

Published in:

Environmental Microbiology, 2014, v. 16, n. 6, p. 1482, doi. 10.1111/1462-2920.12396

By:

Konstantinidis, Konstantinos T.

Publication type:

Article

Microbial community adaptation to quaternary ammonium biocides as revealed by metagenomics.

Published in:

Environmental Microbiology, 2013, v. 15, n. 10, p. 2850, doi. 10.1111/1462-2920.12154

By:

Oh, Seungdae;
Tandukar, Madan;
Pavlostathis, Spyros G.;
Chain, Patrick S. G.;
Konstantinidis, Konstantinos T.

Publication type:

Article

Bacterial species may exist, metagenomics reveal.

Published in:

Environmental Microbiology, 2012, v. 14, n. 2, p. 347, doi. 10.1111/j.1462-2920.2011.02668.x

By:

Caro-Quintero, Alejandro;
Konstantinidis, Konstantinos T.

Publication type:

Article

Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre.

Published in:

Environmental Microbiology, 2008, v. 10, n. 9, p. 2313, doi. 10.1111/j.1462-2920.2008.01657.x

By:

Pham, Vinh D.;
Konstantinidis, Konstantinos T.;
Palden, Tsultrim;
DeLong, Edward F.

Publication type:

Article

Why are so many enteric pathogen infections asymptomatic? Pathogen and gut microbiome characteristics associated with diarrhea symptoms and carriage of diarrheagenic E. coli in northern Ecuador.

Published in:

Gut Microbes, 2023, v. 15, n. 2, p. 1, doi. 10.1080/19490976.2023.2281010

By:

Jesser, Kelsey J;
Trueba, Gabriel;
Konstantinidis, Konstantinos T.;
Levy, Karen

Publication type:

Article

Toward quantifying the adaptive role of bacterial pangenomes during environmental perturbations.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 5, p. 1222, doi. 10.1038/s41396-021-01149-9

By:

Conrad, Roth E.;
Viver, Tomeu;
Gago, Juan F.;
Hatt, Janet K.;
Venter, Stephanus N.;
Rossello-Mora, Ramon;
Konstantinidis, Konstantinos T.

Publication type:

Article

Beach sand oil spills select for generalist microbial populations.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 11, p. 3418, doi. 10.1038/s41396-021-01017-6

By:

Heritier-Robbins, Patrick;
Karthikeyan, Smruthi;
Hatt, Janet K.;
Kim, Minjae;
Huettel, Markus;
Kostka, Joel E.;
Konstantinidis, Konstantinos T.;
Rodriguez-R, Luis M.

Publication type:

Article

Distinct ecotypes within a natural haloarchaeal population enable adaptation to changing environmental conditions without causing population sweeps.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 4, p. 1178, doi. 10.1038/s41396-020-00842-5

By:

Viver, Tomeu;
Conrad, Roth E.;
Orellana, Luis H.;
Urdiain, Mercedes;
González-Pastor, José E.;
Hatt, Janet K.;
Amann, Rudolf;
Antón, Josefa;
Konstantinidis, Konstantinos T.;
Rosselló-Móra, Ramon

Publication type:

Article

Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 1, p. 19, doi. 10.1038/s41396-020-00748-2

By:

Wang, Zhao;
Tsementzi, Despina;
Williams, Tiffany C.;
Juarez, Doris L.;
Blinebry, Sara K.;
Garcia, Nathan S.;
Sienkiewicz, Brooke K.;
Konstantinidis, Konstantinos T.;
Johnson, Zackary I.;
Hunt, Dana E.

Publication type:

Article

Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 12, p. 3024, doi. 10.1038/s41396-019-0491-z

By:

Orellana, Luis H.;
Ben Francis, T.;
Krüger, Karen;
Teeling, Hanno;
Müller, Marie-Caroline;
Fuchs, Bernhard M.;
Konstantinidis, Konstantinos T.;
Amann, Rudolf I.

Publication type:

Article

Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 12, p. 2901, doi. 10.1038/s41396-019-0485-x

By:

Hale, Lauren;
Feng, Wenting;
Yin, Huaqun;
Guo, Xue;
Zhou, Xishu;
Bracho, Rosvel;
Pegoraro, Elaine;
Penton, C. Ryan;
Wu, Liyou;
Cole, James;
Konstantinidis, Konstantinos T.;
Luo, Yiqi;
Tiedje, James M.;
Schuur, Edward. A. G.;
Zhou, Jizhong

Publication type:

Article

"Candidatus Macondimonas diazotrophica", a novel gammaproteobacterial genus dominating crude-oil-contaminated coastal sediments.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 8, p. 2129, doi. 10.1038/s41396-019-0400-5

By:

Karthikeyan, Smruthi;
Rodriguez-R, Luis M.;
Heritier-Robbins, Patrick;
Kim, Minjae;
Overholt, Will A.;
Gaby, John C.;
Hatt, Janet K.;
Spain, Jim C.;
Rosselló-Móra, Ramon;
Huettel, Markus;
Kostka, Joel E.;
Konstantinidis, Konstantinos T.

Publication type:

Article

Quantifying the changes in genetic diversity within sequence-discrete bacterial populations across a spatial and temporal riverine gradient.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 3, p. 767, doi. 10.1038/s41396-018-0307-6

By:

Meziti, Alexandra;
Tsementzi, Despina;
Rodriguez-R, Luis M.;
Hatt, Janet K.;
Karayanni, Hera;
Kormas, Konstantinos A.;
Konstantinidis, Konstantinos T.

Publication type:

Article

Single cell genomic and transcriptomic evidence for the use of alternative nitrogen substrates by anammox bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 11, p. 2706, doi. 10.1038/s41396-018-0223-9

By:

Ganesh, Sangita;
Bertagnolli, Anthony D.;
Bristow, Laura A.;
Padilla, Cory C.;
Blackwood, Nigel;
Aldunate, Montserrat;
Bourbonnais, Annie;
Altabet, Mark A.;
Malmstrom, Rex R.;
Woyke, Tanja;
Ulloa, Osvaldo;
Konstantinidis, Konstantinos T.;
Thamdrup, Bo;
Stewart, Frank J.

Publication type:

Article

Reply to the commentary “Uncultivated microbes—in need of their own nomenclature?”.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 3, p. 653, doi. 10.1038/s41396-017-0011-y

By:

Konstantinidis, Konstantinos T;
Rosselló-Móra, Ramon;
Amann, Rudolf

Publication type:

Article

Uncultivated microbes in need of their own taxonomy.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 11, p. 2399, doi. 10.1038/ismej.2017.113

By:

Konstantinidis, Konstantinos T;
Rosselló-Móra, Ramon;
Amann, Rudolf

Publication type:

Article

Warming enhances old organic carbon decomposition through altering functional microbial communities.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 8, p. 1825, doi. 10.1038/ismej.2017.48

By:

Cheng, Lei;
Zhang, Naifang;
Yuan, Mengting;
Xiao, Jing;
Qin, Yujia;
Deng, Ye;
Tu, Qichao;
Xue, Kai;
Van Nostrand, Joy D;
Wu, Liyou;
He, Zhili;
Zhou, Xuhui;
Leigh, Mary Beth;
Konstantinidis, Konstantinos T;
Schuur, Edward AG;
Luo, Yiqi;
Tiedje, James M;
Zhou, Jizhong

Publication type:

Article

Experimental warming reveals positive feedbacks to climate change in the Eurasian Steppe.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 4, p. 885, doi. 10.1038/ismej.2016.180

By:

Zhang, Ximei;
Johnston, Eric R;
Li, Linghao;
Konstantinidis, Konstantinos T;
Han, Xingguo

Publication type:

Article

Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 9, p. 1928, doi. 10.1038/ismej.2015.5

By:

Rodriguez-R, Luis M;
Overholt, Will A;
Hagan, Christopher;
Huettel, Markus;
Kostka, Joel E;
Konstantinidis, Konstantinos T

Publication type:

Article

Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 5, p. 1130, doi. 10.1038/ismej.2014.204

By:

Vital, Marius;
Chai, Benli;
Østman, Bjørn;
Cole, James;
Konstantinidis, Konstantinos T;
Tiedje, James M

Publication type:

Article

Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 4, p. 958, doi. 10.1038/ismej.2014.193

By:

Caro-Quintero, Alejandro;
Konstantinidis, Konstantinos T

Publication type:

Article

Estimating coverage in metagenomic data sets and why it matters.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 11, p. 2349, doi. 10.1038/ismej.2014.76

By:

Rodriguez-R, Luis M;
Konstantinidis, Konstantinos T

Publication type:

Article

Individual genome assembly from complex community short-read metagenomic datasets.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 4, p. 898, doi. 10.1038/ismej.2011.147

By:

Luo, Chengwei;
Tsementzi, Despina;
Kyrpides, Nikos C;
Konstantinidis, Konstantinos T

Publication type:

Article

Unprecedented levels of horizontal gene transfer among spatially co-occurring Shewanella bacteria from the Baltic Sea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 1, p. 131, doi. 10.1038/ismej.2010.93

By:

Caro-Quintero, Alejandro;
Deng, Jie;
Auchtung, Jennifer;
Brettar, Ingrid;
Höfle, Manfred G;
Klappenbach, Joel;
Konstantinidis, Konstantinos T

Publication type:

Article

Various microbial taxa couple arsenic transformation to nitrogen and carbon cycling in paddy soils.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01952-4

By:

Zhao, Xin-Di;
Gao, Zi-Yu;
Peng, Jingjing;
Konstantinidis, Konstantinos T.;
Zhang, Si-Yu

Publication type:

Article

The Bacterial Symbionts of Closely Related Hydrothermal Vent Snails With Distinct Geochemical Habitats Show Broad Similarity in Chemoautotrophic Gene Content.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01818

By:

Beinart, Roxanne A.;
Luo, Chengwei;
Konstantinidis, Konstantinos T.;
Stewart, Frank J.;
Girguis, Peter R.

Publication type:

Article

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07641-9

By:

Jain, Chirag;
Rodriguez-R, Luis M.;
Phillippy, Adam M.;
Konstantinidis, Konstantinos T.;
Aluru, Srinivas

Publication type:

Article