Works by Kolisko, Martin

Results: 37

Developing molecular surveillance of SARS-CoV-2 in the Czech Republic (2021–2022)

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-01074-3

By:

Šúri, Timotej;
Pfeiferová, Lucie;
Bezdíček, Matěj;
Svatoň, Jan;
Hampl, Vladimír;
Berka, Karel;
Jiřincová, Helena;
Lengerová, Martina;
Kolísko, Martin;
Nagy, Alexander;
Tachezy, Ruth;
Bartoš, Jan;
Brož, Petr;
Bystrý, Vojtěch;
Čech, Martin;
Čechová, Monika;
Černý, Jiří;
Chudějová, Kateřina;
Dolinová, Iva;
Dřevínek, Pavel

Publication type:

Article

Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep04641

By:

Akinori Yabuki;
Ryoma Kamikawa;
Sohta A. Ishikawa;
Martin Kolisko;
Eunsoo Kim;
Akifumi S. Tanabe;
Keitaro Kume;
Ken-ichiro Ishida;
Yuji Inagki

Publication type:

Article

On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1.

Published in:

BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-016-0284-z

By:

Feifei Xu;
Jerlström-Hultqvist, Jon;
Kolisko, Martin;
Simpson, Alastair G. B.;
Roger, Andrew J.;
Svärd, Staffan G.;
Andersson, Jan O.

Publication type:

Article

Author Correction: Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist.

Published in:

2021

By:

Salas-Leiva, Dayana E.;
Tromer, Eelco C.;
Curtis, Bruce A.;
Jerlström-Hultqvist, Jon;
Kolisko, Martin;
Yi, Zhenzhen;
Salas-Leiva, Joan S.;
Gallot-Lavallée, Lucie;
Williams, Shelby K.;
Kops, Geert J. P. L.;
Archibald, John M.;
Simpson, Alastair G. B.;
Roger, Andrew J.

Publication type:

Correction Notice

Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26077-2

By:

Salas-Leiva, Dayana E.;
Tromer, Eelco C.;
Curtis, Bruce A.;
Jerlström-Hultqvist, Jon;
Kolisko, Martin;
Yi, Zhenzhen;
Salas-Leiva, Joan S.;
Gallot-Lavallée, Lucie;
Williams, Shelby K.;
Kops, Geert J. P. L.;
Archibald, John M.;
Simpson, Alastair G. B.;
Roger, Andrew J.

Publication type:

Article

Global diversity and distribution of close relatives of apicomplexan parasites.

Published in:

Environmental Microbiology, 2018, v. 20, n. 8, p. 2824, doi. 10.1111/1462-2920.14134

By:

Mathur, Varsha;
del Campo, Javier;
Kolisko, Martin;
Keeling, Patrick J.

Publication type:

Article

A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats.

Published in:

Environmental Microbiology, 2010, v. 12, n. 10, p. 2700, doi. 10.1111/j.1462-2920.2010.02239.x

By:

Kolisko, Martin;
Silberman, Jeffrey D.;
Cepicka, Ivan;
Yubuki, Naoji;
Takishita, Kiyotaka;
Yabuki, Akinori;
Leander, Brian S.;
Inouye, Isao;
Inagaki, Yuji;
Roger, Andrew J.;
Simpson, Alastair G. B.

Publication type:

Article

Transcriptome-Wide Comparisons and Virulence Gene Polymorphisms of Host-Associated Genotypes of the Cnidarian Parasite Ceratonova shasta in Salmonids.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 8, p. 1258, doi. 10.1093/gbe/evaa109

By:

Alama-Bermejo, Gema;
Meyer, Eli;
Atkinson, Stephen D;
Holzer, Astrid S;
Wiśniewska, Monika M;
Kolísko, Martin;
Bartholomew, Jerri L

Publication type:

Article

A Single Tim Translocase in the Mitosomes of Giardia intestinalis Illustrates Convergence of Protein Import Machines in Anaerobic Eukaryotes.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 10, p. 2813, doi. 10.1093/gbe/evy215

By:

Pyrihová, Eva;
Motyčková, Alžběta;
Voleman, Luboš;
Wandyszewska, Natalia;
Fišer, Radovan;
Seydlová, Gabriela;
Roger, Andrew;
Kolísko, Martin;
Doležal, Pavel

Publication type:

Article

Gene Content Evolution in Discobid Mitochondria Deduced from the Phylogenetic Position and Complete Mitochondrial Genome of Tsukubamonas globosa.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 2, p. 306, doi. 10.1093/gbe/evu015

By:

Ryoma Kamikawa;
Martin Kolisko;
Yuki Nishimura;
Akinori Yabuki;
Brown, Matthew W.;
Ishikawa, Sohta A.;
Ken-ichiro Ishida;
Roger, Andrew J.;
Tetsuo Hashimoto;
Yuji Inagaki

Publication type:

Article

Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes.

Published in:

BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0771-4

By:

Novák, Lukáš;
Zubáčová, Zuzana;
Karnkowska, Anna;
Kolisko, Martin;
Hroudová, Miluše;
Stairs, Courtney W.;
Simpson, Alastair G. B.;
Keeling, Patrick J.;
Roger, Andrew J.;
Čepička, Ivan;
Hampl, Vladimír

Publication type:

Article

Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: Implications for the evolutionary history of the double karyomastigont of diplomonads.

Published in:

BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-205

By:

Kolisko, Martin;
Cepicka, Ivan;
Hampl, Vladimir;
Leigh, Jessica;
Roger, Andrew J.;
Kulda, Jaroslav;
Simpson, Alastair G. B.;
Flegr, Jaroslav

Publication type:

Article

Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 1, p. 1, doi. 10.1093/molbev/msad002

By:

Mathur, Varsha;
Salomaki, Eric D;
Wakeman, Kevin C;
Na, Ina;
Kwong, Waldan K;
Kolisko, Martin;
Keeling, Patrick J

Publication type:

Article

Fe–S Cluster Assembly in Oxymonads and Related Protists.

Published in:

Molecular Biology & Evolution, 2018, v. 35, n. 11, p. 2712, doi. 10.1093/molbev/msy168

By:

Vacek, Vojtěch;
Novák, Lukáš V F;
Treitli, Sebastian C;
Táborský, Petr;
Čepička, Ivan;
Kolísko, Martin;
Keeling, Patrick J;
Hampl, Vladimír

Publication type:

Article

Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 9, p. 2376, doi. 10.1093/molbev/msw109

By:

Hehenberger, Elisabeth;
Burki, Fabien;
Kolisko, Martin;
Keeling, Patrick J.

Publication type:

Article

The expanded genome of Hexamita inflata, a free-living diplomonad.

Published in:

Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-04514-x

By:

Akdeniz, Zeynep;
Havelka, Michal;
Stoklasa, Michal;
Jiménez-González, Alejandro;
Žárský, Vojtěch;
Xu, Feifei;
Stairs, Courtney W.;
Jerlström-Hultqvist, Jon;
Kolísko, Martin;
Provazník, Jan;
Svärd, Staffan;
Andersson, Jan O.;
Tachezy, Jan

Publication type:

Article

A Study on the Prevalence and Subtype Diversity of the Intestinal Protist Blastocystis sp. in a Gut-Healthy Human Population in the Czech Republic.

Published in:

Frontiers in Cellular & Infection Microbiology, 2020, v. 10, p. N.PAG, doi. 10.3389/fcimb.2020.544335

By:

Lhotská, Zuzana;
Jirků, Milan;
Hložková, Oldřiška;
Brožová, Kristýna;
Jirsová, Dagmar;
Stensvold, Christen Rune;
Kolísko, Martin;
Jirků Pomajbíková, Kateřina

Publication type:

Article

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 1, p. 304, doi. 10.1038/ismej.2017.167

By:

Strassert, Jürgen F H;
Karnkowska, Anna;
Hehenberger, Elisabeth;
del Campo, Javier;
Kolisko, Martin;
Okamoto, Noriko;
Burki, Fabien;
Janouškovec, Jan;
Poirier, Camille;
Leonard, Guy;
Hallam, Steven J;
Richards, Thomas A;
Worden, Alexandra Z;
Santoro, Alyson E;
Keeling, Patrick J

Publication type:

Article

Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans.

Published in:

BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-01007-2

By:

Salomaki, Eric D.;
Terpis, Kristina X.;
Rueckert, Sonja;
Kotyk, Michael;
Varadínová, Zuzana Kotyková;
Čepička, Ivan;
Lane, Christopher E.;
Kolisko, Martin

Publication type:

Article

Probing the Biology of Giardia intestinalis Mitosomes Using In Vivo Enzymatic Tagging.

Published in:

Molecular & Cellular Biology, 2015, v. 35, n. 16, p. 2864, doi. 10.1128/MCB.00448-15

By:

Martincová, Eva;
Voleman, Luboš;
Pyrih, Jan;
Žárský, Vojtečh;
Vondráčková, Pavlína;
Kolísko, Martin;
Tachezy, Jan;
Doležal, Pavel

Publication type:

Article

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.

Published in:

PLoS Biology, 2021, v. 19, n. 8, p. 1, doi. 10.1371/journal.pbio.3001365

By:

Tice, Alexander K.;
Žihala, David;
Pánek, Tomáš;
Jones, Robert E.;
Salomaki, Eric D.;
Nenarokov, Serafim;
Burki, Fabien;
Eliáš, Marek;
Eme, Laura;
Roger, Andrew J.;
Rokas, Antonis;
Shen, Xing-Xing;
Strassert, Jürgen F. H.;
Kolísko, Martin;
Brown, Matthew W.

Publication type:

Article

Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory.

Published in:

Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01571-5

By:

Obiol, Aleix;
López-Escardó, David;
Salomaki, Eric D.;
Wiśniewska, Monika M.;
Forn, Irene;
Sà, Elisabet;
Vaqué, Dolors;
Kolísko, Martin;
Massana, Ramon

Publication type:

Article

There Is Treasure Everywhere: Reductive Plastid Evolution in Apicomplexa in Light of Their Close Relatives.

Published in:

Biomolecules (2218-273X), 2019, v. 9, n. 8, p. 378, doi. 10.3390/biom9080378

By:

Salomaki, Eric D.;
Kolisko, Martin

Publication type:

Article

Minimal cytosolic iron-sulfur cluster assembly machinery of Giardia intestinalis is partially associated with mitosomes.

Published in:

Molecular Microbiology, 2016, v. 102, n. 4, p. 701, doi. 10.1111/mmi.13487

By:

Pyrih, Jan;
Pyrihová, Eva;
Kolísko, Martin;
Stojanovová, Darja;
Basu, Somsuvro;
Harant, Karel;
Haindrich, Alexander C.;
Doležal, Pavel;
Lukeš, Julius;
Roger, Andrew;
Tachezy, Jan

Publication type:

Article

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution.

Published in:

PLoS Biology, 2018, v. 16, n. 9, p. 1, doi. 10.1371/journal.pbio.2005849

By:

del Campo, Javier;
Kolisko, Martin;
Boscaro, Vittorio;
Santoferrara, Luciana F.;
Nenarokov, Serafim;
Massana, Ramon;
Guillou, Laure;
Simpson, Alastair;
Berney, Cedric;
de Vargas, Colomban;
Brown, Matthew W.;
Keeling, Patrick J.;
Wegener Parfrey, Laura

Publication type:

Article

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis.

Published in:

PLoS Biology, 2017, v. 15, n. 9, p. 1, doi. 10.1371/journal.pbio.2003769

By:

Gentekaki, Eleni;
Curtis, Bruce A.;
Stairs, Courtney W.;
Klimeš, Vladimír;
Eliáš, Marek;
Salas-Leiva, Dayana E.;
Herman, Emily K.;
Eme, Laura;
Arias, Maria C.;
Henrissat, Bernard;
Hilliou, Frédérique;
Klute, Mary J.;
Suga, Hiroshi;
Malik, Shehre-Banoo;
Pightling, Arthur W.;
Kolisko, Martin;
Rachubinski, Richard A.;
Schlacht, Alexander;
Soanes, Darren M.;
Tsaousis, Anastasios D.

Publication type:

Article

Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher.

Published in:

Current Protocols, 2024, v. 4, n. 1, p. 1, doi. 10.1002/cpz1.969

By:

Jones, Robert E.;
Tice, Alexander K.;
Eliáš, Marek;
Eme, Laura;
Kolísko, Martin;
Nenarokov, Serafim;
Pánek, Tomáš;
Rokas, Antonis;
Salomaki, Eric;
Strassert, Jürgen F. H.;
Shen, Xing‐Xing;
Žihala, David;
Brown, Matthew W.

Publication type:

Article

Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86645-w

By:

Singh, Racquel A.;
Boscaro, Vittorio;
James, Erick R.;
Karnkowska, Anna;
Kolisko, Martin;
Gavelis, Gregory S.;
Okamoto, Noriko;
del Campo, Javier;
Fiorito, Rebecca;
Hehenberger, Elisabeth;
Irwin, Nicholas A. T.;
Mathur, Varsha;
Scheffrahn, Rudolf H.;
Keeling, Patrick J.

Publication type:

Article

EukRef-excavates: seven curated SSU ribosomal RNA gene databases.

Published in:

Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa080

By:

Kolisko, Martin;
Flegontova, Olga;
Karnkowska, Anna;
Lax, Gordon;
Maritz, Julia M;
Pánek, Tomáš;
Táborský, Petr;
Carlton, Jane M;
Čepička, Ivan;
Horák, Aleš;
Lukeš, Julius;
Simpson, Alastair G B;
Tai, Vera

Publication type:

Article

New Parabasalia symbionts Snyderella spp. and Daimonympha gen. nov. from South American Rugitermes termites and the parallel evolution of a cell with a rotating "head".

Published in:

Journal of Eukaryotic Microbiology, 2023, v. 70, n. 5, p. 1, doi. 10.1111/jeu.12987

By:

Hehenberger, Elisabeth;
Boscaro, Vittorio;
James, Erick R.;
Hirakawa, Yoshihisa;
Trznadel, Morelia;
Mtawali, Mahara;
Fiorito, Rebecca;
del Campo, Javier;
Karnkowska, Anna;
Kolisko, Martin;
Irwin, Nicholas A. T.;
Mathur, Varsha;
Scheffrahn, Rudolf H.;
Keeling, Patrick J.

Publication type:

Article

Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods.

Published in:

Journal of Eukaryotic Microbiology, 2019, v. 66, n. 4, p. 574, doi. 10.1111/jeu.12701

By:

Strassert, Jürgen F.H.;
Hehenberger, Elisabeth;
Campo, Javier;
Okamoto, Noriko;
Kolisko, Martin;
Richards, Thomas A.;
Worden, Alexandra Z.;
Santoro, Alyson E.;
Keeling, Patrick J.

Publication type:

Article

Cell Morphology and Formal Description of Ergobibamus cyprinoides n. g., n. sp., Another Carpediemonas-Like Relative of Diplomonads PARK ET AL. ERGOBIBAMUS N. G., A NEW DIPLOMONAD RELATIVE.

Published in:

Journal of Eukaryotic Microbiology, 2010, v. 57, n. 6, p. 520, doi. 10.1111/j.1550-7408.2010.00506.x

By:

JONG SOO PARK;
KOLISKO, MARTIN;
SIMPSON, ALASTAIR G. B.

Publication type:

Article

Light Microscopic Observations, Ultrastructure, and Molecular Phylogeny of Hicanonectes teleskopos n. g., n. sp., a Deep-Branching Relative of Diplomonads.

Published in:

Journal of Eukaryotic Microbiology, 2009, v. 56, n. 4, p. 373, doi. 10.1111/j.1550-7408.2009.00412.x

By:

PARK, JONG SOO;
KOLISKO, MARTIN;
HEISS, AARON A.;
SIMPSON, ALASTAIR G.B.

Publication type:

Article

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.

Published in:

eLife, 2015, p. 1, doi. 10.7554/eLife.06974

By:

Woo, Yong H.;
Ansari, Hifzur;
Otto, Thomas D.;
Klinger, Christen M.;
Kolisko, Martin;
Michalek, Jan;
Saxena, Alka;
Shanmugam, Dhanasekaran;
Tayyrov, Annageldi;
Veluchamy, Alaguraj;
Ali, Shahjahan;
Bernal, Axel;
Campo, Javier del;
Cihlar, Jaromi;
Flegontov, Pavel;
Gornik, Sebastian G.;
Hajduskova, Eva;
Horak, Ales;
Janouskovec, Jan;
Katris, Nicholas J.

Publication type:

Article

Comparative transcriptomics reveal stage-dependent parasitic adaptations in the myxozoan Sphaerospora molnari.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11265-x

By:

Wiśniewska, Monika M.;
Kyslík, Jiří;
Alama-Bermejo, Gema;
Lövy, Alena;
Kolísko, Martin;
Holzer, Astrid S.;
Kosakyan, Anush

Publication type:

Article

Ovarian transcriptome analyses indicate that weak juvenile hormone signaling underlies the molecular basis of oogenesis deficiencies in mosquitoes.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02266-z

By:

Wiśniewska, Monika M.;
Kolísko, Martin;
Berková, Petra;
Moos, Martin;
Maaroufi, Houda O.;
Noriega, Fernando G.;
Nouzova, Marcela

Publication type:

Article

Expanded gene and taxon sampling of diplomonads shows multiple switches to parasitic and free-living lifestyle.

Published in:

BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-02013-w

By:

Wiśniewska, Monika M.;
Salomaki, Eric D.;
Silberman, Jeffrey D.;
Terpis, Kristina X.;
Mazancová, Eva;
Táborský, Petr;
Jinatham, Vasana;
Gentekaki, Eleni;
Čepička, Ivan;
Kolisko, Martin

Publication type:

Article