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Create, Analyze, and Visualize Phylogenomic Datasets Using PhyloFisher.
- Published in:
- Current Protocols, 2024, v. 4, n. 1, p. 1, doi. 10.1002/cpz1.969
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- Article
New Parabasalia symbionts Snyderella spp. and Daimonympha gen. nov. from South American Rugitermes termites and the parallel evolution of a cell with a rotating "head".
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- Journal of Eukaryotic Microbiology, 2023, v. 70, n. 5, p. 1, doi. 10.1111/jeu.12987
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- Article
Gene expression dynamics of natural assemblages of heterotrophic flagellates during bacterivory.
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- Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-023-01571-5
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- Article
Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids.
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- Molecular Biology & Evolution, 2023, v. 40, n. 1, p. 1, doi. 10.1093/molbev/msad002
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- Article
Author Correction: Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist.
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- 2021
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- Correction Notice
Genomic analysis finds no evidence of canonical eukaryotic DNA processing complexes in a free-living protist.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26077-2
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- Article
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.
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- PLoS Biology, 2021, v. 19, n. 8, p. 1, doi. 10.1371/journal.pbio.3001365
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- Article
Gregarine single-cell transcriptomics reveals differential mitochondrial remodeling and adaptation in apicomplexans.
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- BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-01007-2
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- Article
Characterization of new cristamonad species from kalotermitid termites including a novel genus, Runanympha.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86645-w
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- Article
A Study on the Prevalence and Subtype Diversity of the Intestinal Protist Blastocystis sp. in a Gut-Healthy Human Population in the Czech Republic.
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- Frontiers in Cellular & Infection Microbiology, 2020, v. 10, p. N.PAG, doi. 10.3389/fcimb.2020.544335
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- Article
Transcriptome-Wide Comparisons and Virulence Gene Polymorphisms of Host-Associated Genotypes of the Cnidarian Parasite Ceratonova shasta in Salmonids.
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- Genome Biology & Evolution, 2020, v. 12, n. 8, p. 1258, doi. 10.1093/gbe/evaa109
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- Article
EukRef-excavates: seven curated SSU ribosomal RNA gene databases.
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- Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa080
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- Article
There Is Treasure Everywhere: Reductive Plastid Evolution in Apicomplexa in Light of Their Close Relatives.
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- Biomolecules (2218-273X), 2019, v. 9, n. 8, p. 378, doi. 10.3390/biom9080378
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- Article
Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods.
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- Journal of Eukaryotic Microbiology, 2019, v. 66, n. 4, p. 574, doi. 10.1111/jeu.12701
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- Article
Fe–S Cluster Assembly in Oxymonads and Related Protists.
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- Molecular Biology & Evolution, 2018, v. 35, n. 11, p. 2712, doi. 10.1093/molbev/msy168
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- Article
A Single Tim Translocase in the Mitosomes of Giardia intestinalis Illustrates Convergence of Protein Import Machines in Anaerobic Eukaryotes.
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- Genome Biology & Evolution, 2018, v. 10, n. 10, p. 2813, doi. 10.1093/gbe/evy215
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- Article
EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution.
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- PLoS Biology, 2018, v. 16, n. 9, p. 1, doi. 10.1371/journal.pbio.2005849
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- Article
Global diversity and distribution of close relatives of apicomplexan parasites.
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- Environmental Microbiology, 2018, v. 20, n. 8, p. 2824, doi. 10.1111/1462-2920.14134
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- Article
Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis.
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- PLoS Biology, 2017, v. 15, n. 9, p. 1, doi. 10.1371/journal.pbio.2003769
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- Article
Minimal cytosolic iron-sulfur cluster assembly machinery of Giardia intestinalis is partially associated with mitosomes.
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- Molecular Microbiology, 2016, v. 102, n. 4, p. 701, doi. 10.1111/mmi.13487
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- Article
Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes.
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- BMC Evolutionary Biology, 2016, v. 16, p. 1, doi. 10.1186/s12862-016-0771-4
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- Article
Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont.
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- Molecular Biology & Evolution, 2016, v. 33, n. 9, p. 2376, doi. 10.1093/molbev/msw109
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- Article
On the reversibility of parasitism: adaptation to a free-living lifestyle via gene acquisitions in the diplomonad Trepomonas sp. PC1.
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- BMC Biology, 2016, v. 14, p. 1, doi. 10.1186/s12915-016-0284-z
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- Article
Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites.
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- eLife, 2015, p. 1, doi. 10.7554/eLife.06974
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- Article
Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista.
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- Scientific Reports, 2014, p. 1, doi. 10.1038/srep04641
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- Article
Gene Content Evolution in Discobid Mitochondria Deduced from the Phylogenetic Position and Complete Mitochondrial Genome of Tsukubamonas globosa.
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- Genome Biology & Evolution, 2014, v. 6, n. 2, p. 306, doi. 10.1093/gbe/evu015
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- Article
Cell Morphology and Formal Description of Ergobibamus cyprinoides n. g., n. sp., Another Carpediemonas-Like Relative of Diplomonads PARK ET AL. ERGOBIBAMUS N. G., A NEW DIPLOMONAD RELATIVE.
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- Journal of Eukaryotic Microbiology, 2010, v. 57, n. 6, p. 520, doi. 10.1111/j.1550-7408.2010.00506.x
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- Article
A wide diversity of previously undetected free-living relatives of diplomonads isolated from marine/saline habitats.
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- Environmental Microbiology, 2010, v. 12, n. 10, p. 2700, doi. 10.1111/j.1462-2920.2010.02239.x
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- Article
Light Microscopic Observations, Ultrastructure, and Molecular Phylogeny of Hicanonectes teleskopos n. g., n. sp., a Deep-Branching Relative of Diplomonads.
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- Journal of Eukaryotic Microbiology, 2009, v. 56, n. 4, p. 373, doi. 10.1111/j.1550-7408.2009.00412.x
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- Article
Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: Implications for the evolutionary history of the double karyomastigont of diplomonads.
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- BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-205
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- Article