Works by Kochetov, Alex V.

Results: 25

AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs.

Published in:

Bioinformatics, 2017, v. 33, n. 6, p. 923, doi. 10.1093/bioinformatics/btw736

By:

Kochetov, Alex V.;
Allmer, Jens;
Klimenko, Alexandra I.;
Zuraev, Bulat S.;
Matushkin, Yury G.;
Lashin, Sergey A.

Publication type:

Article

Differential expression of NBS-LRR-encoding genes in the root transcriptomes of two Solanum phureja genotypes with contrasting resistance to Globodera rostochiensis.

Published in:

BMC Plant Biology, 2017, v. 17, p. 41, doi. 10.1186/s12870-017-1193-1

By:

Kochetov, Alex V.;
Glagoleva, Anastasiya Y.;
Strygina, Kseniya V.;
Khlestkina, Elena K.;
Gerasimova, Sophia V.;
Ibragimova, Salmaz M.;
Shatskaya, Natalja V.;
Vasilyev, Gennady V.;
Afonnikov, Dmitry A.;
Shmakov, Nikolay A.;
Antonova, Olga Y.;
Gavrilenko, Tatyana A.;
Alpatyeva, Natalia V.;
Khiutti, Alexander;
Afanasenko, Olga S.

Publication type:

Article

Expression of an extracellular ribonuclease gene increases resistance to Cucumber mosaic virus in tobacco.

Published in:

BMC Plant Biology, 2016, v. 16, p. 147, doi. 10.1186/s12870-016-0928-8

By:

Teppei Sugawara;
Trifonova, Ekaterina A.;
Kochetov, Alex V.;
Yoshinori Kanayama

Publication type:

Article

AUG codons at the beginning of protein coding sequences are frequent in eukaryotic mRNAs with a suboptimal start codon context.

Published in:

Bioinformatics, 2005, v. 21, n. 7, p. 837, doi. 10.1093/bioinformatics/bti136

By:

Alex V. Kochetov

Publication type:

Article

Translational polymorphism as a potential source of plant proteins variety in Arabidopsis thaliana.

Published in:

Bioinformatics, 2004, v. 20, n. 4, p. 445, doi. 10.1093/bioinformatics/btg443

By:

Alex V. Kochetov;
Akinori Sarai

Publication type:

Article

Prediction of eukaryotic mRNA translational properties.

Published in:

Bioinformatics, 1999, v. 15, n. 7, p. 704, doi. 10.1093/bioinformatics/15.7.704

By:

Kochetov, Alex V.;
Ponomarenko, Mikhail P.;
Frolov, Anatoly S.;
Kisselev, Lev L.;
Kolchanov, Nikolay A.

Publication type:

Article

Alternative translation start sites and hidden coding potential of eukaryotic mRNAs.

Published in:

BioEssays, 2008, v. 30, n. 7, p. 683, doi. 10.1002/bies.20771

By:

Kochetov, Alex V.

Publication type:

Article

Plant biology research at BGRS-2018.

Published in:

BMC Plant Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12870-019-1634-0

By:

Orlov, Yuriy L.;
Salina, Elena A.;
Eslami, Gilda;
Kochetov, Alex V.

Publication type:

Article

Genomics research at Bioinformatics of Genome Regulation and Structure\ Systems Biology (BGRS\SB) conferences in Novosibirsk.

Published in:

BMC Genomics, 2019, v. 20, n. 3, p. N.PAG, doi. 10.1186/s12864-019-5707-0

By:

Orlov, Yuriy L.;
Kochetov, Alex V.;
Li, Guoliang;
Kolchanov, Nikolay A.

Publication type:

Article

uORFs, reinitiation and alternative translation start sites in human mRNAs

Published in:

FEBS Letters, 2008, v. 582, n. 9, p. 1293, doi. 10.1016/j.febslet.2008.03.014

By:

Kochetov, Alex V.;
Ahmad, Shandar;
Ivanisenko, Vladimir;
Volkova, Oxana A.;
Kolchanov, Nikolay A.;
Sarai, Akinori

Publication type:

Article

The alien replicon: Artificial genetic constructs to direct the synthesis of transmissible self-replicating RNAs.

Published in:

BioEssays, 2014, v. 36, n. 12, p. 1204, doi. 10.1002/bies.201400111

By:

Kochetov, Alex V.

Publication type:

Article

Assembly and Analysis of Plastomes for 15 Potato Cultivars Grown in Russia.

Published in:

Agronomy, 2023, v. 13, n. 6, p. 1454, doi. 10.3390/agronomy13061454

By:

Karetnikov, Dmitry I.;
Salina, Elena A.;
Kochetov, Alex V.;
Afonnikov, Dmitry A.

Publication type:

Article

Three Cycles of Continuous Propagation of a Severe PSTVd Strain NicTr-3 in Solanum lycopersicum cv. Rutgers Resulted in Its Attenuation and Very Mild Disease Symptoms in Potato.

Published in:

Agronomy, 2023, v. 13, n. 3, p. 684, doi. 10.3390/agronomy13030684

By:

Kochetov, Alex V.;
Shmakov, Nikolay;
Afonnikov, Dmitry A.;
Vasiliev, Gennady V.;
Shatskaya, Natalja V.;
Egorova, Anastasiya A.;
Mironenko, Nina V.;
Lashina, Nina M.;
Khiutti, Alexander V.;
Afanasenko, Olga S.

Publication type:

Article

NLR Genes Related Transcript Sets in Potato Cultivars Bearing Genetic Material of Wild Mexican Solanum Species.

Published in:

Agronomy, 2021, v. 11, n. 12, p. 2426, doi. 10.3390/agronomy11122426

By:

Kochetov, Alex V.;
Afonnikov, Dmitry A.;
Shmakov, Nikolay;
Vasiliev, Gennady V.;
Antonova, Olga Y.;
Shatskaya, Natalja V.;
Glagoleva, Anastasiya Y.;
Ibragimova, Salmaz M.;
Khiutti, Aleksander;
Afanasenko, Olga S.;
Gavrilenko, Tatjana A.

Publication type:

Article

Genetic control of anthocyanin pigmentation of potato tissues.

Published in:

BMC Genetics, 2019, v. 20, p. N.PAG, doi. 10.1186/s12863-019-0728-x

By:

Strygina, Ksenia V.;
Kochetov, Alex V.;
Khlestkina, Elena K.

Publication type:

Article

Computational models in genetics at BGRS-2018.

Published in:

2019

By:

Orlov, Yuriy L.;
Tatarinova, Tatiana V.;
Kochetov, Alex V.

Publication type:

Editorial

WAX INDUCER 1 Regulates β-Diketone Biosynthesis by Mediating Expression of the Cer-cqu Gene Cluster in Barley.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 7, p. 6762, doi. 10.3390/ijms24076762

By:

Gerasimova, Sophia V.;
Kolosovskaya, Ekaterina V.;
Vikhorev, Alexander V.;
Korotkova, Anna M.;
Hertig, Christian W.;
Genaev, Mikhail A.;
Domrachev, Dmitry V.;
Morozov, Sergey V.;
Chernyak, Elena I.;
Shmakov, Nikolay A.;
Vasiliev, Gennady V.;
Kochetov, Alex V.;
Kumlehn, Jochen;
Khlestkina, Elena K.

Publication type:

Article

Analysis of Genome Structure and Its Variations in Potato Cultivars Grown in Russia.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 6, p. 5713, doi. 10.3390/ijms24065713

By:

Karetnikov, Dmitry I.;
Vasiliev, Gennady V.;
Toshchakov, Stepan V.;
Shmakov, Nikolay A.;
Genaev, Mikhail A.;
Nesterov, Mikhail A.;
Ibragimova, Salmaz M.;
Rybakov, Daniil A.;
Gavrilenko, Tatjana A.;
Salina, Elena A.;
Patrushev, Maxim V.;
Kochetov, Alex V.;
Afonnikov, Dmitry A.

Publication type:

Article

Abnormal mTOR Activity in Pediatric Autoimmune Neuropsychiatric and MIA-Associated Autism Spectrum Disorders.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 2, p. 967, doi. 10.3390/ijms23020967

By:

Trifonova, Ekaterina A.;
Mustafin, Zakhar S.;
Lashin, Sergey A.;
Kochetov, Alex V.

Publication type:

Article

Do Autism Spectrum and Autoimmune Disorders Share Predisposition Gene Signature Due to mTOR Signaling Pathway Controlling Expression?

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 10, p. 5248, doi. 10.3390/ijms22105248

By:

Trifonova, Ekaterina A.;
Klimenko, Alexandra I.;
Mustafin, Zakhar S.;
Lashin, Sergey A.;
Kochetov, Alex V.;
Goncharova, Elena A.;
Yu, Jane J.

Publication type:

Article

The mTOR Signaling Pathway Activity and Vitamin D Availability Control the Expression of Most Autism Predisposition Genes.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 24, p. 6332, doi. 10.3390/ijms20246332

By:

Trifonova, Ekaterina A.;
Klimenko, Alexandra I.;
Mustafin, Zakhar S.;
Lashin, Sergey A.;
Kochetov, Alex V.

Publication type:

Article

AUG_hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 1

By:

Kochetov, Alex V;
Palyanov, Andrey;
Titov, Igor I;
Grigorovich, Dmitry;
Sarai, Akinori;
Kolchanov, Nikolay A

Publication type:

Article

Alternative translation start sites are conserved in eukaryotic genomes.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 2, p. 567, doi. 10.1093/nar/gkq806

By:

Bazykin, Georgii A.;
Kochetov, Alex V.

Publication type:

Article

Conversion of hulled into naked barley by Cas endonuclease-mediated knockout of the NUD gene.

Published in:

BMC Plant Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12870-020-02454-9

By:

Gerasimova, Sophia V.;
Hertig, Christian;
Korotkova, Anna M.;
Kolosovskaya, Ekaterina V.;
Otto, Ingrid;
Hiekel, Stefan;
Kochetov, Alex V.;
Khlestkina, Elena K.;
Kumlehn, Jochen

Publication type:

Article

The mechanism of potato resistance to Globodera rostochiensis: comparison of root transcriptomes of resistant and susceptible Solanum phureja genotypes.

Published in:

BMC Plant Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12870-020-02334-2

By:

Kochetov, Alex V.;
Egorova, Anastasiya A.;
Glagoleva, Anastasiya Y.;
Strygina, Kseniya V.;
Khlestkina, Elena K.;
Gerasimova, Sophia V.;
Shatskaya, Natalja V.;
Vasilyev, Gennady V.;
Afonnikov, Dmitry A.;
Shmakov, Nikolay A.;
Antonova, Olga Y.;
Alpatyeva, Natalia V.;
Khiutti, Alexander;
Afanasenko, Olga S.;
Gavrilenko, Tatjana A.

Publication type:

Article