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Phosducin-like proteins in Dictyostelium discoideum: implications for the phosducin family of proteins.
Published in:
EMBO Journal, 2003, v. 22, n. 19, p. 5047, doi. 10.1093/emboj/cdg508
By:
- Blaauw, Mieke;
- Knol, Jaco C.;
- Kortholt, Arjan;
- Roelofs, Jeroen;
- Ruchira;
- Postma, Marten;
- Visser, Antonie J. W. G.;
- van Haastert, Peter J. M.
Publication type:
Article
C1q is increased in cerebrospinal fluid‐derived extracellular vesicles in Alzheimer's disease: A multi‐cohort proteomics and immuno‐assay validation study.
Published in:
Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2023, v. 19, n. 11, p. 4828, doi. 10.1002/alz.13066
By:
- Chatterjee, Madhurima;
- Özdemir, Selcuk;
- Kunadt, Marcel;
- Koel‐Simmelink, Marleen;
- Boiten, Walter;
- Piepkorn, Lars;
- Pham, Thang V.;
- Chiasserini, Davide;
- Piersma, Sander R.;
- Knol, Jaco C.;
- Möbius, Wiebke;
- Mollenhauer, Brit;
- van der Flier, Wiesje M.;
- Jimenez, Connie R.;
- Teunissen, Charlotte E.;
- Jahn, Olaf;
- Schneider, Anja
Publication type:
Article
Effects of Cancer Presence and Therapy on the Platelet Proteome.
Published in:
International Journal of Molecular Sciences, 2021, v. 22, n. 15, p. 8236, doi. 10.3390/ijms22158236
By:
- Walraven, Maudy;
- Sabrkhany, Siamack;
- Knol, Jaco C.;
- Dekker, Henk;
- de Reus, Inge;
- Piersma, Sander R.;
- Pham, Thang V.;
- Griffioen, Arjan W.;
- Broxterman, Henk J.;
- Oude Egbrink, Mirjam;
- Verheul, Henk M. W.;
- Jimenez, Connie R.
Publication type:
Article
Loss of FLCN-FNIP1/2 induces a non-canonical interferon response in human renal tubular epithelial cells.
Published in:
eLife, 2021, p. 1, doi. 10.7554/eLife.61630
By:
- Glykofridis, Iris E.;
- Knol, Jaco C.;
- Balk, Jesper A.;
- Westland, Denise;
- Pham, Thang V.;
- Piersma, Sander R.;
- Lougheed, Sinéad M.;
- Derakhshan, Sepide;
- Veen, Puck;
- Rooimans, Martin A.;
- van Mil, Saskia E.;
- Böttger, Franziska;
- Poddighe, Pino J.;
- van de Beek, Irma;
- Drost, Jarno;
- Zwartkruis, Fried J. T.;
- de Menezes, Renee X.;
- Meijers-Heijboer, Hanne E. J.;
- Houweling, Arjan C.;
- Jimenez, Connie R.
Publication type:
Article
Cultivation of immobilizedDictyostelium discoideumfor the production of soluble human Fas ligand.
Published in:
Applied Microbiology & Biotechnology, 2004, v. 65, n. 5, p. 547, doi. 10.1007/s00253-004-1620-8
By:
- Yinghua Lu;
- Knol, Jaco C.;
- Linskens, Maarten H. K.;
- Friehs, Karl;
- Van Haastert, Peter J. M.;
- Flaschel, Erwin
Publication type:
Article
Kinase Inhibitor Treatment of Patients with Advanced Cancer Results in High Tumor Drug Concentrations and in Specific Alterations of the Tumor Phosphoproteome.
Published in:
Cancers, 2020, v. 12, n. 2, p. 330, doi. 10.3390/cancers12020330
By:
- Labots, Mariette;
- Pham, Thang V.;
- Honeywell, Richard J.;
- Knol, Jaco C.;
- Beekhof, Robin;
- de Goeij-de Haas, Richard;
- Dekker, Henk;
- Neerincx, Maarten;
- Piersma, Sander R.;
- van der Mijn, Johannes C.;
- van der Peet, Donald L.;
- Meijerink, Martijn R.;
- Peters, Godefridus J.;
- van Grieken, Nicole C.T.;
- Jiménez, Connie R.;
- Verheul, Henk M.W.
Publication type:
Article
Kinase activities in pancreatic ductal adenocarcinoma with prognostic and therapeutic avenues.
Published in:
Molecular Oncology, 2024, v. 18, n. 8, p. 2020, doi. 10.1002/1878-0261.13625
By:
- Vallés‐Martí, Andrea;
- de Goeij‐de Haas, Richard R.;
- Henneman, Alex A.;
- Piersma, Sander R.;
- Pham, Thang V.;
- Knol, Jaco C.;
- Verheij, Joanne;
- Dijk, Frederike;
- Halfwerk, Hans;
- Giovannetti, Elisa;
- Jiménez, Connie R.;
- Bijlsma, Maarten F.
Publication type:
Article
Cancer cells copy migratory behavior and exchange signaling networks via extracellular vesicles.
Published in:
EMBO Journal, 2018, v. 37, n. 15, p. 1, doi. 10.15252/embj.201798357
By:
- Steenbeek, Sander C.;
- Pham, Thang V.;
- de Ligt, Joep;
- Zomer, Anoek;
- Knol, Jaco C.;
- Piersma, Sander R.;
- Schelfhorst, Tim;
- Huisjes, Rick;
- Schiffelers, Raymond M.;
- Cuppen, Edwin;
- Jimenez, Connie R.;
- van Rheenen, Jacco
Publication type:
Article
Advancing wide implementation of precision oncology: A liquid nitrogen‐free snap freezer preserves molecular profiles of biological samples.
Published in:
Cancer Medicine, 2023, v. 12, n. 9, p. 10979, doi. 10.1002/cam4.5781
By:
- van der Wijngaart, Hanneke;
- Jagga, Sahil;
- Dekker, Henk;
- de Goeij, Richard;
- Piersma, Sander R.;
- Pham, Thang V.;
- Knol, Jaco C.;
- Zonderhuis, Babs M.;
- Holland, Harry J.;
- Jiménez, Connie R.;
- Verheul, Henk M. W.;
- Vanapalli, Srinivas;
- Labots, Mariette
Publication type:
Article
Atrial epicardial adipose tissue abundantly secretes myeloperoxidase and activates atrial fibroblasts in patients with atrial fibrillation.
Published in:
Journal of Translational Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12967-023-04231-2
By:
- Meulendijks, Eva R.;
- Al-Shama, Rushd F. M.;
- Kawasaki, Makiri;
- Fabrizi, Benedetta;
- Neefs, Jolien;
- Wesselink, Robin;
- Ernault, Auriane C.;
- Piersma, Sander;
- Pham, Thang V.;
- Jimenez, Connie R.;
- Knol, Jaco C.;
- van Boven, Wim J. P.;
- Driessen, Antoine H. G.;
- de Vries, Tim A. C.;
- van der Leeden, Britt;
- Niessen, Hans W. M.;
- de Boer, Onno J.;
- Krul, Sébastien P. J.;
- de Groot, Joris R.
Publication type:
Article
INKA, an integrative data analysis pipeline for phosphoproteomic inference of active kinases.
Published in:
2019
By:
- Beekhof, Robin;
- Alphen, Carolien;
- Henneman, Alex A;
- Knol, Jaco C;
- Pham, Thang V;
- Rolfs, Frank;
- Labots, Mariette;
- Henneberry, Evan;
- Le Large, Tessa YS;
- Haas, Richard R;
- Piersma, Sander R;
- Vurchio, Valentina;
- Bertotti, Andrea;
- Trusolino, Livio;
- Verheul, Henk MW;
- Jimenez, Connie R
Publication type:
Correction Notice
INKA, an integrative data analysis pipeline for phosphoproteomic inference of active kinases.
Published in:
Molecular Systems Biology, 2019, v. 15, n. 4, p. N.PAG, doi. 10.15252/msb.20188250
By:
- Beekhof, Robin;
- Alphen, Carolien;
- Henneman, Alex A;
- Knol, Jaco C;
- Pham, Thang V;
- Rolfs, Frank;
- Labots, Mariette;
- Henneberry, Evan;
- Le Large, Tessa YS;
- Haas, Richard R;
- Piersma, Sander R;
- Vurchio, Valentina;
- Bertotti, Andrea;
- Trusolino, Livio;
- Verheul, Henk MW;
- Jimenez, Connie R
Publication type:
Article
Secretome processing for proteomics: A methods comparison.
Published in:
Proteomics, 2024, v. 24, n. 7, p. 1, doi. 10.1002/pmic.202300262
By:
- Almeida‐Marques, Catarina;
- Rolfs, Frank;
- Piersma, Sander R.;
- Bijnsdorp, Irene V.;
- Pham, Thang V.;
- Knol, Jaco C.;
- Jimenez, Connie R.
Publication type:
Article
Phosphotyrosine-Based Phosphoproteomics of a Panel AML Cell Lines Reveals Oncogenic Signaling and Hyperactive Tyrosine Kinases as Targets for Treatment.
Published in:
Clinical Lymphoma, Myeloma & Leukemia, 2017, v. 17, p. S2, doi. 10.1016/j.clml.2017.09.026
By:
- van Alphen, Carolien;
- Cloos, Jacqueline;
- Piersma, Sander R.;
- Knol, Jaco C.;
- Pham, Thang V.;
- van Meerloo, Johan;
- Ossenkoppele, Gert J.;
- Verheul, Henk M. W.;
- Janssen, Jeroen J. W. M.;
- Jimenez, Connie R.
Publication type:
Article
Sunitinib activates Axl signaling in renal cell cancer.
Published in:
International Journal of Cancer, 2016, v. 138, n. 12, p. 3002, doi. 10.1002/ijc.30022
By:
- van der Mijn, Johannes C.;
- Broxterman, Henk J.;
- Knol, Jaco C.;
- Piersma, Sander R.;
- De Haas, Richard R.;
- Dekker, Henk;
- Pham, Thang V.;
- Van Beusechem, Victor W.;
- Halmos, Balazs;
- Mier, James W.;
- Jiménez, Connie R.;
- Verheul, Henk M.W.
Publication type:
Article
Detection of breast cancer by surface-enhanced laser desorption/ionization time-of-light mass spectrometry tissue and serum protein profiling.
Published in:
International Journal of Biological Markers, 2009, v. 24, n. 3, p. 130, doi. 10.5301/JBM.2009.3475
By:
- Gast, Marie-Christine W.;
- Van Dulken, Eric J.;
- Van Loenen, Thea K. G.;
- Kingma-Vegter, Florine;
- Westerga, Johan;
- Flohil, Claudie C.;
- Knol, Jaco C.;
- Jimenez, Connie R.;
- Van Gils, Carla H.;
- Wessels, Lodewijk F. A.;
- Schellens, Jan H. M.;
- Beijnen, Jos H.
Publication type:
Article
AAMP and MTSS1 Are Novel Negative Regulators of Endothelial Barrier Function Identified in a Proteomics Screen.
Published in:
Cells (2073-4409), 2024, v. 13, n. 19, p. 1609, doi. 10.3390/cells13191609
By:
- Podieh, Fabienne;
- Overboom, Max C.;
- Knol, Jaco C.;
- Piersma, Sander R.;
- Goeij-de Haas, Richard;
- Pham, Thang V.;
- Jimenez, Connie R.;
- Hordijk, Peter L.
Publication type:
Article
Proteomic Analysis of miR-195 and miR-497 Replacement Reveals Potential Candidates that Increase Sensitivity to Oxaliplatin in MSI/P53wt Colorectal Cancer Cells.
Published in:
Cells (2073-4409), 2019, v. 8, n. 9, p. 1111, doi. 10.3390/cells8091111
By:
- Poel, Dennis;
- Boyd, Lenka N.C.;
- Beekhof, Robin;
- Schelfhorst, Tim;
- Pham, Thang V.;
- Piersma, Sander R.;
- Knol, Jaco C.;
- Jimenez, Connie R.;
- Verheul, Henk M.W.;
- Buffart, Tineke E.
Publication type:
Article
Phosphoproteomics of patient-derived xenographs identifies targets and markers associated with sensitivity and resistance to EGFR blockade in colorectal cancer.
Published in:
Science Translational Medicine, 2023, v. 15, n. 709, p. 1, doi. 10.1126/scitranslmed.abm3687
By:
- Beekhof, Robin;
- Bertotti, Andrea;
- Böttger, Franziska;
- Vurchio, Valentina;
- Cottino, Francesca;
- Zanella, Eugenia R.;
- Migliardi, Giorgia;
- Viviani, Marco;
- Grassi, Elena;
- Lupo, Barbara;
- Henneman, Alex A.;
- Knol, Jaco C.;
- Pham, Thang V.;
- de Goeij-de Haas, Richard;
- Piersma, Sander R.;
- Labots, Mariette;
- Verheul, Henk M.W.;
- Trusolino, Livio;
- Jimenez, Connie R.
Publication type:
Article
Lipopolysaccharide‐regulated secretion of soluble and vesicle‐based proteins from a panel of colorectal cancer cell lines.
Published in:
Proteomics - Clinical Applications, 2021, v. 15, n. 2/3, p. 1, doi. 10.1002/prca.201900119
By:
- Garcia de Durango, Cira R.;
- Monteiro, Madalena N.;
- Bijnsdorp, Irene V.;
- Pham, Thang V.;
- De Wit, Meike;
- Piersma, Sander Rogier;
- Knol, Jaco C.;
- Pérez‐Gordo, Marina;
- Fijneman, Remond J. A.;
- Vidal‐Vanaclocha, Fernando;
- Jimenez, Connie R.
Publication type:
Article
Response and toxicity prediction by MALDI-TOF-MS serum peptide profiling in patients with non-small cell lung cancer.
Published in:
Proteomics - Clinical Applications, 2016, v. 10, n. 7, p. 743, doi. 10.1002/prca.201600025
By:
- Rovithi, Maria;
- Lind, Joline S. W.;
- Pham, Thang V.;
- Voortman, Johannes;
- Knol, Jaco C.;
- Verheul, Henk M. W.;
- Smit, Egbert F.;
- Jimenez, Connie R.
Publication type:
Article
Influence of variations in sample handling on SELDI-TOF MS serum protein profiles for colorectal cancer.
Published in:
Proteomics - Clinical Applications, 2008, v. 2, n. 6, p. 936, doi. 10.1002/prca.200780068
By:
- Engwegen, Judith Y. M. N.;
- Alberts, Marieke;
- Knol, Jaco C.;
- Jimenez, Connie R.;
- Depla, Annekatrien C. T. M.;
- Tuynman, Henriëtte;
- van Heukelem, Henk A.;
- Snel, Pleun;
- Smits, Marianne E.;
- Cats, Annemieke;
- Schellens, Jan H. M.;
- Beijnen, Jos H.
Publication type:
Article
Automated serum peptide profiling using novel magnetic C18 beads off-line coupled to MALDI-TOF-MS.
Published in:
Proteomics - Clinical Applications, 2007, v. 1, n. 6, p. 598, doi. 10.1002/prca.200600483
By:
- Jimenez, Connie R.;
- El Filali, Zineb;
- Knol, Jaco C.;
- Hoekman, Klaas;
- Kruyt, Frank A. E.;
- Giaccone, Giuseppe;
- Smit, August B.;
- Li, Ka Wan
Publication type:
Article
Candidate biomarkers for treatment benefit from sunitinib in patients with advanced renal cell carcinoma using mass spectrometry-based (phospho)proteomics.
Published in:
Clinical Proteomics, 2023, v. 20, n. 1, p. 1, doi. 10.1186/s12014-023-09437-6
By:
- van der Wijngaart, Hanneke;
- Beekhof, Robin;
- Knol, Jaco C.;
- Henneman, Alex A.;
- de Goeij-de Haas, Richard;
- Piersma, Sander R.;
- Pham, Thang V.;
- Jimenez, Connie R.;
- Verheul, Henk M. W.;
- Labots, Mariette
Publication type:
Article
Whole gel processing procedure for GeLC-MS/MS based proteomics.
Published in:
Proteome Science, 2013, v. 11, n. 1, p. 1, doi. 10.1186/1477-5956-11-17
By:
- Piersma, Sander R.;
- Warmoes, Marc O.;
- de Wit, Meike;
- de Reus, Inge;
- Knol, Jaco C.;
- Jiménez, Connie R.
Publication type:
Article

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