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CLOUD: a non-parametric detection test for microbiome outliers.
- Published in:
- Microbiome, 2018, v. 6, n. 1, p. N.PAG, doi. 10.1186/s40168-018-0514-4
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- Publication type:
- Article
Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas ( Propithecus verreauxi).
- Published in:
- Ecology & Evolution (20457758), 2017, v. 7, n. 15, p. 5732, doi. 10.1002/ece3.3148
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- Publication type:
- Article
Moving pictures of the human microbiome.
- Published in:
- Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r50
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- Publication type:
- Article
US Immigration Is Associated With Rapid and Persistent Acquisition of Antibiotic Resistance Genes in the Gut.
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- Clinical Infectious Diseases, 2020, v. 71, n. 2, p. 419, doi. 10.1093/cid/ciz1087
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- Publication type:
- Article
Placentas delivered by pre-pregnant obese women have reduced abundance and diversity in the microbiome.
- Published in:
- FASEB Journal, 2021, v. 35, n. 4, p. 1, doi. 10.1096/fj.202002184RR
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- Publication type:
- Article
Bacterial community structure and function distinguish gut sites in captive red‐shanked doucs (Pygathrix nemaeus).
- Published in:
- American Journal of Primatology, 2019, v. 81, n. 10/11, p. N.PAG, doi. 10.1002/ajp.22977
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- Publication type:
- Article
Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29277-x
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- Publication type:
- Article
Moving beyond de novo clustering in fungal community ecology.
- Published in:
- New Phytologist, 2017, v. 216, n. 3, p. 629, doi. 10.1111/nph.14752
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- Publication type:
- Article
Functional genomics identifies negative regulatory nodes controlling phagocyte oxidative burst.
- Published in:
- Nature Communications, 2015, v. 6, n. 7, p. 7838, doi. 10.1038/ncomms8838
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- Publication type:
- Article
Obesity induces gut microbiota alterations and augments acute graft-versus-host disease after allogeneic stem cell transplantation.
- Published in:
- Science Translational Medicine, 2020, v. 12, n. 571, p. 1, doi. 10.1126/scitranslmed.aay7713
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- Publication type:
- Article
Human gut microbiome viewed across age and geography.
- Published in:
- Nature, 2012, v. 486, n. 7402, p. 222, doi. 10.1038/nature11053
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- Publication type:
- Article
Bacterial, fungal, and interkingdom microbiome features of exclusively breastfeeding dyads are associated with infant age, antibiotic exposure, and birth mode.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1050574
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- Publication type:
- Article
Metagenomic Information Recovery from Human Stool Samples Is Influenced by Sequencing Depth and Profiling Method.
- Published in:
- Genes, 2020, v. 11, n. 11, p. 1380, doi. 10.3390/genes11111380
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- Publication type:
- Article
The effects of the Green-Mediterranean diet on cardiometabolic health are linked to gut microbiome modifications: a randomized controlled trial.
- Published in:
- Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01015-z
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- Publication type:
- Article
Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 1, p. 50, doi. 10.1038/ismej.2012.79
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- Publication type:
- Article
Supervised classification of microbiota mitigates mislabeling errors.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 4, p. 570, doi. 10.1038/ismej.2010.148
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- Publication type:
- Article
UniFrac: an effective distance metric for microbial community comparison.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 2, p. 169, doi. 10.1038/ismej.2010.133
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- Publication type:
- Article
NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004658
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- Publication type:
- Article
Randomised clinical study: oral aspirin 325 mg daily vs placebo alters gut microbial composition and bacterial taxa associated with colorectal cancer risk.
- Published in:
- Alimentary Pharmacology & Therapeutics, 2020, v. 52, n. 6, p. 976, doi. 10.1111/apt.16013
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- Publication type:
- Article
Host Species and Captivity Distinguish the Microbiome Compositions of a Diverse Zoo-Resident Non-Human Primate Population.
- Published in:
- Diversity (14242818), 2022, v. 14, n. 9, p. N.PAG, doi. 10.3390/d14090715
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- Publication type:
- Article
Hmong microbiome ANd Gout, Obesity, Vitamin C (HMANGO-C): A phase II clinical study protocol.
- Published in:
- PLoS ONE, 2023, v. 17, n. 2, p. 1, doi. 10.1371/journal.pone.0279830
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- Publication type:
- Article
Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies.
- Published in:
- Nature Biotechnology, 2016, v. 34, n. 9, p. 942, doi. 10.1038/nbt.3601
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- Publication type:
- Article
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 9, p. 814, doi. 10.1038/nbt.2676
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- Publication type:
- Article
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002863
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- Publication type:
- Article
LMdist: Local Manifold distance accurately measures beta diversity in ecological gradients.
- Published in:
- Bioinformatics, 2023, v. 39, n. 12, p. 1, doi. 10.1093/bioinformatics/btad727
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- Publication type:
- Article
SHOGUN: a modular, accurate and scalable framework for microbiome quantification.
- Published in:
- Bioinformatics, 2020, v. 36, n. 13, p. 4088, doi. 10.1093/bioinformatics/btaa277
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- Publication type:
- Article
Gut microbiota modulation with long-chain corn bran arabinoxylan in adults with overweight and obesity is linked to an individualized temporal increase in fecal propionate.
- Published in:
- Microbiome, 2020, v. 8, n. 1, p. N.PAG, doi. 10.1186/s40168-020-00887-w
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- Publication type:
- Article
Insights from Characterizing Extinct Human Gut Microbiomes.
- Published in:
- PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0051146
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- Publication type:
- Article
Composition of Human Skin Microbiota Affects Attractiveness to Malaria Mosquitoes.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028991
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- Publication type:
- Article
Microbial Biogeography of Public Restroom Surfaces.
- Published in:
- PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0028132
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- Publication type:
- Article
Shotgun sequencing of the faecal microbiome to predict response to steroids in patients with lower gastrointestinal acute graft‐versus‐host disease: An exploratory analysis.
- Published in:
- British Journal of Haematology, 2021, v. 192, n. 3, p. e69, doi. 10.1111/bjh.17238
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- Publication type:
- Article
Genetic effects on the commensal microbiota in inflammatory bowel disease patients.
- Published in:
- PLoS Genetics, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pgen.1008018
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- Publication type:
- Article
Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection.
- Published in:
- Microbiome, 2015, v. 3, n. 1, p. 1, doi. 10.1186/s40168-015-0070-0
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- Publication type:
- Article
Gut microbiota from metabolic disease-resistant, macrophage-specific RIP140 knockdown mice improves metabolic phenotype and gastrointestinal integrity.
- Published in:
- Scientific Reports, 2016, p. 38599, doi. 10.1038/srep38599
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- Publication type:
- Article
The Impact of a Consortium of Fermented Milk Strains on the Gut Microbiome of Gnotobiotic Mice and Monozygotic Twins.
- Published in:
- Science Translational Medicine, 2011, v. 3, n. 106, p. 1, doi. 10.1126/scitranslmed.3002701
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- Publication type:
- Article
Bayesian community-wide culture-independent microbial source tracking.
- Published in:
- Nature Methods, 2011, v. 8, n. 9, p. 761, doi. 10.1038/nmeth.1650
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- Publication type:
- Article
QIIME allows analysis of high-throughput community sequencing data.
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- 2010
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- Publication type:
- Letter
Infant fungal communities: current knowledge and research opportunities.
- Published in:
- 2017
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- Publication type:
- journal article
Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks.
- Published in:
- GigaScience, 2019, v. 8, n. 5, p. N.PAG, doi. 10.1093/gigascience/giz042
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- Publication type:
- Article
HOMINID: a framework for identifying associations between host genetic variation and microbiome composition.
- Published in:
- GigaScience, 2017, v. 6, n. 12, p. 1, doi. 10.1093/gigascience/gix107
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- Publication type:
- Article
High-Throughput flaA Short Variable Region Sequencing to Assess Campylobacter Diversity in Fecal Samples From Birds.
- Published in:
- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02201
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- Publication type:
- Article
SplinectomeR Enables Group Comparisons in Longitudinal Microbiome Studies.
- Published in:
- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00785
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- Publication type:
- Article
Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection.
- Published in:
- Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0301-4
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- Publication type:
- Article
Virulence genes are a signature of the microbiome in the colorectal tumor microenvironment.
- Published in:
- Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0177-8
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- Publication type:
- Article
Complex host genetics influence the microbiome in inflammatory bowel disease.
- Published in:
- Genome Medicine, 2014, v. 6, n. 12, p. 1, doi. 10.1186/s13073-014-0107-1
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- Publication type:
- Article
Urinary microbiome associated with chronic allograft dysfunction in kidney transplant recipients.
- Published in:
- Clinical Transplantation, 2018, v. 32, n. 12, p. N.PAG, doi. 10.1111/ctr.13436
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- Publication type:
- Article
Shallow shotgun sequencing reduces technical variation in microbiome analysis.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33489-1
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- Publication type:
- Article
Early E. casseliflavus gut colonization and outcomes of allogeneic hematopoietic cell transplantation.
- Published in:
- PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0220850
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- Publication type:
- Article
Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment.
- Published in:
- PLoS Genetics, 2018, v. 14, n. 6, p. 1, doi. 10.1371/journal.pgen.1007376
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- Publication type:
- Article
Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive non‐human primate zoological collection.
- Published in:
- Journal of Medical Primatology, 2019, v. 48, n. 2, p. 114, doi. 10.1111/jmp.12393
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- Publication type:
- Article