Works by Kloczkowski, Andrzej

Results: 80

Harnessing Artificial Intelligence in Pediatric Oncology Diagnosis and Treatment: A Review.

Published in:

Cancers, 2025, v. 17, n. 11, p. 1828, doi. 10.3390/cancers17111828

By:

Hassan, Mubashir;
Shahzadi, Saba;
Kloczkowski, Andrzej

Publication type:

Article

Monte Carlo Simulations on Nanoparticles in Elastomers. Effects of the Particles on the Dimensions of the Polymer Chains and the Mechanical Properties of the Networks.

Published in:

Macromolecular Symposia, 2007, v. 256, n. 1, p. 40, doi. 10.1002/masy.200751004

By:

Mark, James E.;
Abou-Hussein, Reda;
Sen, Taner Z.;
Kloczkowski, Andrzej

Publication type:

Article

Consensus Data Mining (CDM) Protein Secondary Structure Prediction Server: Combining GOR V and Fragment Database Mining (FDM).

Published in:

Bioinformatics, 2007, v. 23, n. 19, p. 2628, doi. 10.1093/bioinformatics/btm379

By:

Haitao Cheng;
Taner Z. Sen;
Robert L. Jernigan;
Andrzej Kloczkowski

Publication type:

Article

On the tricritical points in the McMillan model of liquid crystals†.

Published in:

Molecular Physics, 1985, v. 55, n. 6, p. 1223, doi. 10.1080/00268978500101991

By:

Kloczkowski, Andrzej;
Stecki, Jan

Publication type:

Article

A molecular model for the smectic A phase†.

Published in:

Molecular Physics, 1985, v. 55, n. 3, p. 689, doi. 10.1080/00268978500101641

By:

Kloczkowski, Andrzej;
Stecki, Jan

Publication type:

Article

Therapeutic Implication of miRNAs as an Active Regulatory Player in the Management of Pain: A Review.

Published in:

Genes, 2024, v. 15, n. 8, p. 1003, doi. 10.3390/genes15081003

By:

Hassan, Mubashir;
Shahzadi, Saba;
Yasir, Muhammad;
Chun, Wanjoo;
Kloczkowski, Andrzej

Publication type:

Article

Oncomeric Profiles of microRNAs as New Therapeutic Targets for Treatment of Ewing's Sarcoma: A Composite Review.

Published in:

Genes, 2023, v. 14, n. 10, p. 1849, doi. 10.3390/genes14101849

By:

Hassan, Mubashir;
Shahzadi, Saba;
Malik, Amal;
Din, Salah ud;
Yasir, Muhammad;
Chun, Wanjoo;
Kloczkowski, Andrzej

Publication type:

Article

Reoptimized UNRES Potential for Protein Model Quality Assessment.

Published in:

Genes, 2018, v. 9, n. 12, p. 601, doi. 10.3390/genes9120601

By:

Faraggi, Eshel;
Krupa, Pawel;
Mozolewska, Magdalena A.;
Liwo, Adam;
Kloczkowski, Andrzej

Publication type:

Article

Small-Angle Neutron Scattering from Elastomeric Networks in which the Junctions Alternate Regularly in their Functionality.

Published in:

Macromolecular Theory & Simulations, 2009, v. 18, n. 9, p. 537, doi. 10.1002/mats.200900041

By:

Skliros, Aris;
Mark, James E.;
Kloczkowski, Andrzej

Publication type:

Article

GOR V server for protein secondary structure prediction.

Published in:

Bioinformatics, 2005, v. 21, n. 11, p. 2787, doi. 10.1093/bioinformatics/bti408

By:

Taner Z. Sen;
Robert L. Jernigan;
Jean Garnier;
Andrzej Kloczkowski

Publication type:

Article

Mechanistic insights into TNFR1/MADD death domains in Alzheimer's disease through conformational molecular dynamic analysis.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91606-4

By:

Hassan, Mubashir;
Zahid, Sara;
Alashwal, Hany;
Kloczkowski, Andrzej;
Moustafa, Ahmed A.

Publication type:

Article

In Silico Modeling of Human α2C-Adrenoreceptor Interaction with Filamin-2.

Published in:

PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0103099

By:

Pawlowski, Marcin;
Saraswathi, Saras;
Motawea, Hanaa K. B.;
Chotani, Maqsood A.;
Kloczkowski, Andrzej

Publication type:

Article

Synthesis and discovery of potential tyrosinase inhibitor of new coumarin‐based thiophenyl‐pyrazolylthiazole nuclei: In vitro evaluation, cytotoxicity, kinetic, and computational studies.

Published in:

Chemical Biology & Drug Design, 2023, v. 101, n. 6, p. 1262, doi. 10.1111/cbdd.14209

By:

Hosseini Nasab, Narges;
Raza, Hussain;
Eom, Young Seok;
Hassan, Mubashir;
Kloczkowski, Andrzej;
Kim, Song Ja

Publication type:

Article

Cyclic AMP‐Rap1A signaling mediates cell surface translocation of microvascular smooth muscle α2Cadrenoceptors through the actin binding protein filamin‐2.

Published in:

FASEB Journal, 2013, v. 27, p. 729.15, doi. 10.1096/fasebj.27.1_supplement.729.15

By:

Motawea, Hanaa KB;
Jeyaraj, Selvi C;
Pawlowski, Marcin;
Kloczkowski, Andrzej;
Chotani, Maqsood A.

Publication type:

Article

Computational prognostic evaluation of Alzheimer's drugs from FDA-approved database through structural conformational dynamics and drug repositioning approaches.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-45347-1

By:

Hassan, Mubashir;
Shahzadi, Saba;
Yasir, Muhammad;
Chun, Wanjoo;
Kloczkowski, Andrzej

Publication type:

Article

Computational prognostic evaluation of Alzheimer's drugs from FDA-approved database through structural conformational dynamics and drug repositioning approaches.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-45347-1

By:

Hassan, Mubashir;
Shahzadi, Saba;
Yasir, Muhammad;
Chun, Wanjoo;
Kloczkowski, Andrzej

Publication type:

Article

Predicting protein tertiary structure and its uncertainty analysis via particle swarm sampling.

Published in:

Journal of Molecular Modeling, 2019, v. 25, n. 3, p. N.PAG, doi. 10.1007/s00894-019-3956-0

By:

Álvarez, Óscar;
Fernández-Martínez, Juan Luis;
Corbeanu, Ana Cernea;
Fernández-Muñiz, Zulima;
Kloczkowski, Andrzej

Publication type:

Article

Protein secondary structure prediction using a small training set (compact model) combined with a Complex-valued neural network approach.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1209-0

By:

Rashid, Shamima;
Saraswathi, Saras;
Kloczkowski, Andrzej;
Sundaram, Suresh;
Kolinski, Andrzej

Publication type:

Article

Fold-specific sequence scoring improves protein sequence matching.

Published in:

BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1198-z

By:

Leelananda, Sumudu P.;
Kloczkowski, Andrzej;
Jernigan, Robert L.

Publication type:

Article

Multi-class BCGA-ELM based classifier that identifies biomarkers associated with hallmarks of cancer.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0565-5

By:

Sachnev, Vasily;
Saraswathi, Saras;
Niaz, Rashid;
Kloczkowski, Andrzej;
Suresh, Sundaram

Publication type:

Article

Rapid discrimination between deleterious and benign missense mutations in the CAGI 6 experiment.

Published in:

Human Genomics, 2024, v. 18, n. 1, p. 1, doi. 10.1186/s40246-024-00655-z

By:

Faraggi, Eshel;
Jernigan, Robert L.;
Kloczkowski, Andrzej

Publication type:

Article

Novel 3,5‐Dimethylpyrazole‐Linked 1,2,4‐Triazole‐3‐thiols as Potent Antihyperglycemic Agents: Synthesis, Biological Evaluation, and In Silico Molecular Modelling Investigations.

Published in:

ChemistrySelect, 2024, v. 9, n. 37, p. 1, doi. 10.1002/slct.202403661

By:

Rouzi, Khouloud;
Mortada, Salma;
Hassan, Mubashir;
Alsalme, Ali;
Kloczkowski, Andrzej;
Karbane, Miloud El;
Bouatia, Mustapha;
Faouzi, My El Abbes;
Karrouchi, Khalid

Publication type:

Article

Three Mathematical Models for COVID-19 Prediction.

Published in:

Mathematics (2227-7390), 2023, v. 11, n. 3, p. 506, doi. 10.3390/math11030506

By:

Martínez-Fernández, Pelayo;
Fernández-Muñiz, Zulima;
Cernea, Ana;
Fernández-Martínez, Juan Luis;
Kloczkowski, Andrzej

Publication type:

Article

Orientational distributions of contact clusters in proteins closely resemble those of an icosahedron.

Published in:

Proteins, 2008, v. 73, n. 3, p. 730, doi. 10.1002/prot.22092

By:

Feng, Yaping;
Jernigan, Robert L.;
Kloczkowski, Andrzej

Publication type:

Article

Predicting the order in which contacts are broken during single molecule protein stretching experiments.

Published in:

Proteins, 2008, v. 71, n. 1, p. 45, doi. 10.1002/prot.21652

By:

Sułkowska, Joanna I.;
Kloczkowski, Andrzej;
Sen, Taner Z.;
Cieplak, Marek;
Jernigan, Robert L.

Publication type:

Article

Ideal amino acid exchange forms for approximating substitution matrices.

Published in:

Proteins, 2007, v. 69, n. 2, p. 379, doi. 10.1002/prot.21509

By:

Pokarowski, Piotr;
Kloczkowski, Andrzej;
Nowakowski, Szymon;
Pokarowska, Maria;
Jernigan, Robert L.;
Kolinski, Andrzej

Publication type:

Article

Four-body contact potentials derived from two protein datasets to discriminate native structures from decoys.

Published in:

Proteins, 2007, v. 68, n. 1, p. 57, doi. 10.1002/prot.21362

By:

Feng, Yaping;
Kloczkowski, Andrzej;
Jernigan, Robert L.

Publication type:

Article

Inferring ideal amino acid interaction forms from statistical protein contact potentials.

Published in:

Proteins, 2005, v. 59, n. 1, p. 49, doi. 10.1002/prot.20380

By:

Pokarowski, Piotr;
Kloczkowski, Andrzej;
Jernigan, Robert L.;
Kothari, Neha S.;
Pokarowska, Maria;
Kolinski, Andrzej

Publication type:

Article

The origin and extent of coarse-grained regularities in protein internal packing.

Published in:

Proteins, 2003, v. 53, n. 1, p. 56, doi. 10.1002/prot.10435

By:

Zerrin Bagci;
Andrzej Kloczkowski;
Robert L. Jernigan;
Ivet Bahar

Publication type:

Article

A simple derivation of the exponent γ for Gaussian chains with excluded volume.

Published in:

Macromolecular Theory & Simulations, 1995, v. 4, n. 2, p. 245, doi. 10.1002/mats.1995.040040202

By:

Kloczkowski, Andrzej;
Mark, James E.;
Erman, Burak

Publication type:

Article

Oriented Gelatin—A New Source for High-Performance Materials.

Published in:

Journal of Macromolecular Science: Pure & Applied Chemistry, 1996, v. 33, n. 5, p. 525, doi. 10.1080/10601329608010876

By:

Zhao, Wenyan;
Kloczkowski, Andrzej;
Mark, James E.;
Erman, Burak;
Bahar, Ivet

Publication type:

Article

Robust Prediction of Single and Multiple Point Protein Mutations Stability Changes.

Published in:

Biomolecules (2218-273X), 2020, v. 10, n. 1, p. 1, doi. 10.3390/biom10010067

By:

Álvarez-Machancoses, Óscar;
De Andrés-Galiana, Enrique J.;
Luis Fernández-Martínez, Juan Luis;
Kloczkowski, Andrzej

Publication type:

Article

Discovery of novel TACE inhibitors using graph convolutional network, molecular docking, molecular dynamics simulation, and Biological evaluation.

Published in:

PLoS ONE, 2024, v. 19, n. 12, p. 1, doi. 10.1371/journal.pone.0315245

By:

Yasir, Muhammad;
Park, Jinyoung;
Han, Eun-Taek;
Han, Jin-Hee;
Park, Won Sun;
Hassan, Mubashir;
Kloczkowski, Andrzej;
Chun, Wanjoo

Publication type:

Article

Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs).

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S8-S8

By:

Handelman, Samuel K.;
Seweryn, Michal;
Smith, Ryan M.;
Hartmann, Katherine;
Danxin Wang;
Pietrzak, Maciej;
Johnson, Andrew D.;
Kloczkowski, Andrzej;
Sadee, Wolfgang

Publication type:

Article

Exploration of Flavonoids as Lead Compounds against Ewing Sarcoma through Molecular Docking, Pharmacogenomics Analysis, and Molecular Dynamics Simulations.

Published in:

Molecules, 2023, v. 28, n. 1, p. 414, doi. 10.3390/molecules28010414

By:

Yasir, Muhammad;
Park, Jinyoung;
Han, Eun-Taek;
Park, Won Sun;
Han, Jin-Hee;
Kwon, Yong-Soo;
Lee, Hee-Jae;
Hassan, Mubashir;
Kloczkowski, Andrzej;
Chun, Wanjoo

Publication type:

Article

Tyrosinase Inhibitors Naturally Present in Plants and Synthetic Modifications of These Natural Products as Anti-Melanogenic Agents: A Review.

Published in:

Molecules, 2023, v. 28, n. 1, p. 378, doi. 10.3390/molecules28010378

By:

Hassan, Mubashir;
Shahzadi, Saba;
Kloczkowski, Andrzej

Publication type:

Article

Biological and Cheminformatics Studies of Newly Designed Triazole Based Derivatives as Potent Inhibitors against Mushroom Tyrosinase.

Published in:

Molecules, 2022, v. 27, n. 5, p. 1, doi. 10.3390/molecules27051731

By:

Hassan, Mubashir;
Vanjare, Balasaheb D.;
Kyou-Yeong Sim;
Raza, Hussain;
Ki Hwan Lee;
Shahzadi, Saba;
Kloczkowski, Andrzej

Publication type:

Article

Prediction of Protein Tertiary Structure via Regularized Template Classification Techniques.

Published in:

Molecules, 2020, v. 25, n. 11, p. 2467, doi. 10.3390/molecules25112467

By:

Álvarez-Machancoses, Óscar;
Fernández-Martínez, Juan Luis;
Kloczkowski, Andrzej;
Uversky, Vladimir N.

Publication type:

Article

Exploration of microRNAs as transcriptional regulator in mumps virus infection through computational studies.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-67717-z

By:

Hassan, Mubashir;
Shahzadi, Saba;
Iqbal, Muhammad Shahzad;
Yaseeen, Zainab;
Kloczkowski, Andrzej

Publication type:

Article

On the mean spherical model for liquid crystals†.

Published in:

Molecular Physics, 1982, v. 46, n. 1, p. 13, doi. 10.1080/00268978200101031

By:

Kloczkowski, Andrzej;
Stecki, Jan

Publication type:

Article

On the stability of the isotropic phase towards nematic and smectic A formation†.

Published in:

Molecular Physics, 1981, v. 42, n. 1, p. 51, doi. 10.1080/00268978100100041

By:

Stecki, Jan;
Kloczkowski, Andrzej

Publication type:

Article

Predictive Mathematical Models of the Short-Term and Long-Term Growth of the COVID-19 Pandemic.

Published in:

Computational & Mathematical Methods in Medicine, 2021, p. 1, doi. 10.1155/2021/5556433

By:

Fernández-Martínez, Juan Luis;
Fernández-Muñiz, Zulima;
Cernea, Ana;
Kloczkowski, Andrzej

Publication type:

Article

Homozygous Mutations in GDAP1 and MFN2 Genes Resulted in Autosomal Recessive Forms of Charcot–Marie–Tooth Disease in Consanguineous Pakistani Families.

Published in:

DNA & Cell Biology, 2023, v. 42, n. 11, p. 697, doi. 10.1089/dna.2023.0169

By:

Asif, Muhammad;
Chiou, Chien-Chun;
Hussain, Malik Fiaz;
Hussain, Manzoor;
Sajid, Zureesha;
Gulsher, Muhammad;
Raheem, Afifa;
Khan, Adil;
Nasreen, Nasreen;
Kloczkowski, Andrzej;
Hassan, Mubashir;
Iqbal, Furhan;
Chen, Chien-Chin

Publication type:

Article

Entropy, Fluctuations, and Disordered Proteins.

Published in:

Entropy, 2019, v. 21, n. 8, p. 764, doi. 10.3390/e21080764

By:

Faraggi, Eshel;
Dunker, A. Keith;
Jernigan, Robert L.;
Kloczkowski, Andrzej

Publication type:

Article

Sulfatase 2 Is Associated with Steroid Resistance in Childhood Nephrotic Syndrome.

Published in:

Journal of Clinical Medicine, 2021, v. 10, n. 3, p. 523, doi. 10.3390/jcm10030523

By:

Agrawal, Shipra;
Ransom, Richard F.;
Saraswathi, Saras;
Garcia-Gonzalo, Esperanza;
Webb, Amy;
Fernandez-Martinez, Juan L.;
Popovic, Milan;
Guess, Adam J.;
Kloczkowski, Andrzej;
Benndorf, Rainer;
Sadee, Wolfgang;
Smoyer, William E.;
Rovin, Brad H.

Publication type:

Article

Molecular Role of Protein Phosphatases in Alzheimer's and Other Neurodegenerative Diseases.

Published in:

Biomedicines, 2024, v. 12, n. 5, p. 1097, doi. 10.3390/biomedicines12051097

By:

Hassan, Mubashir;
Yasir, Muhammad;
Shahzadi, Saba;
Chun, Wanjoo;
Kloczkowski, Andrzej

Publication type:

Article

DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D426, doi. 10.1093/nar/gkad985

By:

Basu, Sushmita;
Zhao, Bi;
Biró, Bálint;
Faraggi, Eshel;
Gsponer, Jörg;
Hu, Gang;
Kloczkowski, Andrzej;
Malhis, Nawar;
Mirdita, Milot;
Söding, Johannes;
Steinegger, Martin;
Wang, Duolin;
Wang, Kui;
Xu, Dong;
Zhang, Jian;
Kurgan, Lukasz

Publication type:

Article

DescribePROT: database of amino acid-level protein structure and function predictions.

Published in:

Nucleic Acids Research, 2021, v. 49, n. D1, p. D298, doi. 10.1093/nar/gkaa931

By:

Zhao, Bi;
Katuwawala, Akila;
Oldfield, Christopher J;
Dunker, A Keith;
Faraggi, Eshel;
Gsponer, Jörg;
Kloczkowski, Andrzej;
Malhis, Nawar;
Mirdita, Milot;
Obradovic, Zoran;
Söding, Johannes;
Steinegger, Martin;
Zhou, Yaoqi;
Kurgan, Lukasz

Publication type:

Article

Nature's Own Pharmacy: Mushroom-Based Chemical Scaffolds and Their Therapeutic Implications.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 21, p. 15596, doi. 10.3390/ijms242115596

By:

Hassan, Mubashir;
Shahzadi, Saba;
Ransom, Richard F.;
Kloczkowski, Andrzej

Publication type:

Article

Investigation of Flavonoid Scaffolds as DAX1 Inhibitors against Ewing Sarcoma through Pharmacoinformatic and Dynamic Simulation Studies.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 11, p. 9332, doi. 10.3390/ijms24119332

By:

Yasir, Muhammad;
Park, Jinyoung;
Han, Eun-Taek;
Park, Won Sun;
Han, Jin-Hee;
Kwon, Yong-Soo;
Lee, Hee-Jae;
Hassan, Mubashir;
Kloczkowski, Andrzej;
Chun, Wanjoo

Publication type:

Article