Works by Klipp, Edda

Results: 100

Control of COVID‐19 Outbreaks under Stochastic Community Dynamics, Bimodality, or Limited Vaccination.

Published in:

Advanced Science, 2022, v. 9, n. 23, p. 1, doi. 10.1002/advs.202200088

By:

Goldenbogen, Björn;
Adler, Stephan O.;
Bodeit, Oliver;
Wodke, Judith A. H.;
Escalera‐Fanjul, Ximena;
Korman, Aviv;
Krantz, Maria;
Bonn, Lasse;
Morán‐Torres, Rafael;
Haffner, Johanna E. L.;
Karnetzki, Maxim;
Maintz, Ivo;
Mallis, Lisa;
Prawitz, Hannah;
Segelitz, Patrick S.;
Seeger, Martin;
Linding, Rune;
Klipp, Edda

Publication type:

Article

Moonlighting proteins - an approach to systematize the concept.

Published in:

In Silico Biology, 2020, v. 14, n. 1/2, p. 1, doi. 10.3233/ISB-190473

By:

Krantz, Maria;
Klipp, Edda

Publication type:

Article

Moonlighting proteins - an approach to systematize the concept.

Published in:

In Silico Biology, 2019, v. 13, n. 3/4, p. 71, doi. 10.3233/ISB-190473

By:

Krantz, Maria;
Klipp, Edda

Publication type:

Article

Time-Dependent Quantitative Multicomponent Control of the G<sub>1</sub>-S Network by the Stress-Activated Protein Kinase Hog1 upon Osmostress.

Published in:

Science Signaling, 2011, v. 4, n. 197, p. 1, doi. 10.1126/scisignal.2002204

By:

Adrover, Miquel Àngel;
Zi, Zhike;
Duch, Alba;
Schaber, Jörg;
González-Novo, Alberto;
Jimenez, Javier;
Nadal-Ribelles, Mariona;
Clotet, Josep;
Klipp, Edda;
Posas, Francesc

Publication type:

Article

Time-Dependent Quantitative Multicomponent Control of the G<sub>1</sub>-S Network by the Stress-Activated Protein Kinase Hog1 upon Osmostress.

Published in:

Science Signaling, 2011, v. 4, n. 192, p. 1, doi. 10.1126/scisignal.2002204

By:

Adrover, Miquel Àngel;
Zi, Zhike;
Duch, Alba;
Schaber, Jörg;
González-Novo, Alberto;
Jimenez, Javier;
Nadal-Ribelles, Mariona;
Clotet, Josep;
Klipp, Edda;
Posas, Francesc

Publication type:

Article

Triple-negative breast cancer: Present challenges and new perspectives

Published in:

Molecular Oncology, 2010, v. 4, n. 3, p. 209, doi. 10.1016/j.molonc.2010.04.006

By:

Podo, Franca;
Buydens, Lutgarde M.C.;
Degani, Hadassa;
Hilhorst, Riet;
Klipp, Edda;
Gribbestad, Ingrid S.;
Van Huffel, Sabine;
W.M. van Laarhoven, Hanneke;
Luts, Jan;
Monleon, Daniel;
Postma, Geert J.;
Schneiderhan-Marra, Nicole;
Santoro, Filippo;
Wouters, Hans;
Russnes, Hege G.;
Sørlie, Therese;
Tagliabue, Elda;
Børresen-Dale, Anne-Lise

Publication type:

Article

Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast.

Published in:

Molecular Systems Biology, 2014, v. 10, n. 12, p. 1, doi. 10.15252/msb.20145112

By:

Vaga, Stefania;
Bernardo‐Faura, Marti;
Cokelaer, Thomas;
Maiolica, Alessio;
Barnes, Christopher A;
Gillet, Ludovic C;
Hegemann, Björn;
Drogen, Frank;
Sharifian, Hoda;
Klipp, Edda;
Peter, Matthias;
Saez‐Rodriguez, Julio;
Aebersold, Ruedi

Publication type:

Article

Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.6

By:

Wodke, Judith A. H.;
Puchałka, Jacek;
Lluch-Senar, Maria;
Marcos, Josep;
Yus, Eva;
Godinho, Miguel;
Gutiérrez-Gallego, Ricardo;
Martins dos Santos, Vitor A. P.;
Serrano, Luis;
Klipp, Edda;
Maier, Tobias

Publication type:

Article

Modelling reveals novel roles of two parallel signalling pathways and homeostatic feedbacks in yeast.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.53

By:

Schaber, Jörg;
Baltanas, Rodrigo;
Bush, Alan;
Klipp, Edda;
Colman‐Lerner, Alejandro

Publication type:

Article

A framework for mapping, visualisation and automatic model creation of signal-transduction networks.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 578, doi. 10.1038/msb.2012.12

By:

Tiger, Carl‐Fredrik;
Krause, Falko;
Cedersund, Gunnar;
Palmér, Robert;
Klipp, Edda;
Hohmann, Stefan;
Kitano, Hiroaki;
Krantz, Marcus

Publication type:

Article

Retrieval, alignment, and clustering of computational models based on semantic annotations.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.41

By:

Schulz, Marvin;
Krause, Falko;
Le Novère, Nicolas;
Klipp, Edda;
Liebermeister, Wolfram

Publication type:

Article

Quantitative analysis of transient and sustained transforming growth factor-β signaling dynamics.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.22

By:

Zi, Zhike;
Feng, Zipei;
Chapnick, Douglas A;
Dahl, Markus;
Deng, Difan;
Klipp, Edda;
Moustakas, Aristidis;
Liu, Xuedong

Publication type:

Article

Robustness and fragility in the yeast high osmolarity glycerol (HOG) signal-transduction pathway.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 281, doi. 10.1038/msb.2009.36

By:

Krantz, Marcus;
Ahmadpour, Doryaneh;
Ottosson, Lars‐Göran;
Warringer, Jonas;
Waltermann, Christian;
Nordlander, Bodil;
Klipp, Edda;
Blomberg, Anders;
Hohmann, Stefan;
Kitano, Hiroaki

Publication type:

Article

Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach.

Published in:

2018

By:

Blazquez-Navarro, Arturo;
Schachtner, Thomas;
Stervbo, Ulrik;
Sefrin, Anett;
Stein, Maik;
Westhoff, Timm H.;
Reinke, Petra;
Klipp, Edda;
Babel, Nina;
Neumann, Avidan U.;
Or-Guil, Michal

Publication type:

Abstract

Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006075

By:

Giese, Wolfgang;
Milicic, Gregor;
Schröder, Andreas;
Klipp, Edda

Publication type:

Article

Fungal Hsp90: a biological transistor that tunes cellular outputs to thermal inputs.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 10, p. 693, doi. 10.1038/nrmicro2875

By:

Leach, Michelle D.;
Klipp, Edda;
Cowen, Leah E.;
Brown, Alistair J. P.

Publication type:

Article

Monitoring cytochrome P450 activity in living hepatocytes by chromogenic substrates in response to drug treatment or during cell maturation.

Published in:

Archives of Toxicology, 2018, v. 92, n. 3, p. 1133, doi. 10.1007/s00204-017-2128-1

By:

Theobald, Jannick;
Cheng, Xinlai;
Ghanem, Ali;
Wölfl, Stefan;
Gaitantzi, Haristi;
Breitkopf-Heinlein, Katja;
Dooley, Steven;
Song, Guangqi;
Klipp, Edda;
Wodke, Judith;
Becker, Holger;
Mrowka, Ralf

Publication type:

Article

Data Management and Modeling in Plant Biology.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.717958

By:

Krantz, Maria;
Zimmer, David;
Adler, Stephan O.;
Kitashova, Anastasia;
Klipp, Edda;
Mühlhaus, Timo;
Nägele, Thomas

Publication type:

Article

Biophysical properties of Saccharomyces cerevisiae and their relationship with HOG pathway activation.

Published in:

European Biophysics Journal, 2010, v. 39, n. 11, p. 1547, doi. 10.1007/s00249-010-0612-0

By:

Schaber, Jörg;
Adrover, Miquel À'ngel;
Eriksson, Emma;
Pelet, Serge;
Petelenz-Kurdziel, Elzbieta;
Klein, Dagmara;
Posas, Francesc;
Goksör, Mattias;
Peter, Mathias;
Hohmann, Stefan;
Klipp, Edda

Publication type:

Article

Estimation of immune cell content in tumour tissue using single-cell RNA-seq data.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02289-3

By:

Schelker, Max;
Feau, Sonia;
Jinyan Du;
Ranu, Nav;
Klipp, Edda;
MacBeath, Gavin;
Schoeberl, Birgit;
Raue, Andreas

Publication type:

Article

The game theory of Candida albicans colonization dynamics reveals host status-responsive gene expression.

Published in:

BMC Systems Biology, 2016, v. 11, p. 1, doi. 10.1186/s12918-016-0268-1

By:

Tyc, Katarzyna M.;
Herwald, Sanna E.;
Hogan, Jennifer A.;
Pierce, Jessica V.;
Klipp, Edda;
Kumamoto, Carol A.

Publication type:

Article

Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks.

Published in:

BMC Systems Biology, 2015, v. 9, n. 1, p. 1, doi. 10.1186/s12918-015-0193-8

By:

Tomoya Mori;
Flöttmann, Max;
Krantz, Marcus;
Tatsuya Akutsu;
Klipp, Edda

Publication type:

Article

Global dynamic optimization approach to predict activation in metabolic pathways.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/1752-0509-8-1

By:

de Hijas-Liste, Gundián M.;
Klipp, Edda;
Balsa-Canto, Eva;
Banga, Julio R.

Publication type:

Article

Reaction-contingency based bipartite Boolean modelling.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-58

By:

Flöttmann, Max;
Krause, Falko;
Klipp, Edda;
Krantz, Marcus

Publication type:

Article

Monomeric α‐synuclein activates the plasma membrane calcium pump.

Published in:

EMBO Journal, 2023, v. 42, n. 23, p. 1, doi. 10.15252/embj.2022111122

By:

Kowalski, Antoni;
Betzer, Cristine;
Larsen, Sigrid Thirup;
Gregersen, Emil;
Newcombe, Estella A;
Bermejo, Montaña Caballero;
Bendtsen, Viktor Wisniewski;
Diemer, Jorin;
Ernstsen, Christina V;
Jain, Shweta;
Bou, Alicia Espiña;
Langkilde, Annette Eva;
Nejsum, Lene N;
Klipp, Edda;
Edwards, Robert;
Kragelund, Birthe B;
Jensen, Poul Henning;
Nissen, Poul

Publication type:

Article

Unraveling interactions of cell cycle-regulating proteins Sic1 and B-type cyclins in living yeast cells: a FLIM-FRET approach.

Published in:

FASEB Journal, 2012, v. 26, n. 2, p. 546, doi. 10.1096/fj.11-192518

By:

Schreiber, Gabriele;
Barberis, Matteo;
Scolari, Silvia;
Klaus, Christine;
Herrmann, Andreas;
Klipp, Edda

Publication type:

Article

Comprehensive mathematical model of oxidative phosphorylation valid for physiological and pathological conditions.

Published in:

FEBS Journal, 2017, v. 284, n. 17, p. 2802, doi. 10.1111/febs.14151

By:

Heiske, Margit;
Letellier, Thierry;
Klipp, Edda

Publication type:

Article

Glucose de-repression by yeast AMP-activated protein kinase SNF1 is controlled via at least two independent steps.

Published in:

FEBS Journal, 2014, v. 281, n. 7, p. 1901, doi. 10.1111/febs.12753

By:

García‐Salcedo, Raúl;
Lubitz, Timo;
Beltran, Gemma;
Elbing, Karin;
Tian, Ye;
Frey, Simone;
Wolkenhauer, Olaf;
Krantz, Marcus;
Klipp, Edda;
Hohmann, Stefan

Publication type:

Article

New types of experimental data shape the use of enzyme kinetics for dynamic network modeling.

Published in:

FEBS Journal, 2014, v. 281, n. 2, p. 549, doi. 10.1111/febs.12525

By:

Tummler, Katja;
Lubitz, Timo;
Schelker, Max;
Klipp, Edda

Publication type:

Article

Bud-Localization of CLB2 mRNA Can Constitute a Growth Rate Dependent Daughter Sizer.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004223

By:

Spiesser, Thomas W.;
Kühn, Clemens;
Krantz, Marcus;
Klipp, Edda

Publication type:

Article

Yeast Mating and Image-Based Quantification of Spatial Pattern Formation.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003690

By:

Diener, Christian;
Schreiber, Gabriele;
Giese, Wolfgang;
del Rio, Gabriel;
Schröder, Andreas;
Klipp, Edda

Publication type:

Article

Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003084

By:

Petelenz-Kurdziel, Elzbieta;
Kuehn, Clemens;
Nordlander, Bodil;
Klein, Dagmara;
Hong, Kuk-Ki;
Jacobson, Therese;
Dahl, Peter;
Schaber, Jörg;
Nielsen, Jens;
Hohmann, Stefan;
Klipp, Edda

Publication type:

Article

Minimum Information About a Simulation Experiment (MIASE).

Published in:

PLoS Computational Biology, 2011, v. 7, n. 4, p. 1, doi. 10.1371/journal.pcbi.1001122

By:

Waltemath, Dagmar;
Adams, Richard;
Beard, Daniel A.;
Bergmann, Frank T.;
Bhalla, Upinder S.;
Britten, Randall;
Chelliah, Vijayalakshmi;
Cooling, Michael T.;
Cooper, Jonathan;
Crampin, Edmund J.;
Garny, Alan;
Hoops, Stefan;
Hucka, Michael;
Hunter, Peter;
Klipp, Edda;
Laibe, Camille;
Miller, Andrew K.;
Moraru, Ion;
Nickerson, David;
Nielsen, Poul

Publication type:

Article

Cell Size at S Phase Initiation: An Emergent Property of the G1/S Network.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 4, p. e64, doi. 10.1371/journal.pcbi.0030064

By:

Barberis, Matteo;
Klipp, Edda;
Vanoni, Marco;
Alberghina, Lilia

Publication type:

Article

Chemical Reaction Networks Possess Intrinsic, Temperature-Dependent Functionality.

Published in:

Entropy, 2020, v. 22, n. 1, p. 117, doi. 10.3390/e22010117

By:

Adler, Stephan O.;
Klipp, Edda

Publication type:

Article

Information Thermodynamics for Time Series of Signal-Response Models.

Published in:

Entropy, 2019, v. 21, n. 2, p. 177, doi. 10.3390/e21020177

By:

Auconi, Andrea;
Giansanti, Andrea;
Klipp, Edda

Publication type:

Article

Mathematical modeling of intracellular signaling pathways.

Published in:

BMC Neuroscience, 2006, v. 7, p. S10, doi. 10.1186/1471-2202-7-S1-S10

By:

Klipp, Edda;
Liebermeister, Wolfram

Publication type:

Article

General solution of the chemical master equation and modality of marginal distributions for hierarchic first-order reaction networks.

Published in:

Journal of Mathematical Biology, 2018, v. 77, n. 2, p. 377, doi. 10.1007/s00285-018-1205-2

By:

Reis, Matthias;
Kromer, Justus A.;
Klipp, Edda

Publication type:

Article

Osmolyte homeostasis controls single-cell growth rate and maximum cell size of Saccharomyces cerevisiae.

Published in:

NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0111-6

By:

Altenburg, Tom;
Goldenbogen, Björn;
Uhlendorf, Jannis;
Klipp, Edda

Publication type:

Article

Transcriptional timing and noise of yeast cell cycle regulators—a single cell and single molecule approach.

Published in:

NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-018-0053-4

By:

Amoussouvi, Aouefa;
Teufel, Lotte;
Reis, Matthias;
Seeger, Martin;
Schlichting, Julia Katharina;
Schreiber, Gabriele;
Herrmann, Andreas;
Klipp, Edda

Publication type:

Article

A Clb/Cdk1-mediated regulation of Fkh2 synchronizes CLB expression in the budding yeast cell cycle.

Published in:

NPJ Systems Biology & Applications, 2017, v. 3, n. 1, p. N.PAG, doi. 10.1038/s41540-017-0008-1

By:

Linke, Christian;
Chasapi, Anastasia;
González-Novo, Alberto;
Al Sawad, Istabrak;
Tognetti, Silvia;
Klipp, Edda;
Loog, Mart;
Krobitsch, Sylvia;
Posas, Francesc;
Xenarios, Ioannis;
Barberis, Matteo

Publication type:

Article

A comprehensive, mechanistically detailed, and executable model of the cell division cycle in Saccharomyces cerevisiae.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08903-w

By:

Münzner, Ulrike;
Klipp, Edda;
Krantz, Marcus

Publication type:

Article

The MYpop toolbox: Putting yeast stress responses in cellular context on single cell and population scales.

Published in:

Biotechnology Journal, 2016, v. 11, n. 9, p. 1158, doi. 10.1002/biot.201500344

By:

Spiesser, Thomas;
Kühn, Clemens;
Krantz, Marcus;
Klipp, Edda

Publication type:

Article

Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005075

By:

Schelker, Max;
Mair, Caroline Maria;
Jolmes, Fabian;
Welke, Robert-William;
Klipp, Edda;
Herrmann, Andreas;
Flöttmann, Max;
Sieben, Christian

Publication type:

Article

A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiae.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004703

By:

Gerber, Susanne;
Fröhlich, Martina;
Lichtenberg-Fraté, Hella;
Shabala, Sergey;
Shabala, Lana;
Klipp, Edda

Publication type:

Article

An Antimicrobial Peptide Induces <italic>FIG1</italic>-Dependent Cell Death During Cell Cycle Arrest in Yeast.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01240

By:

Arellano, Vladimir J.;
Martinell García, Paula;
Rodríguez Plaza, Jonathan G.;
Lara Ortiz, Maria T.;
Schreiber, Gabriele;
Volkmer, Rudolf;
Klipp, Edda;
Rio, Gabriel Del

Publication type:

Article

Modeling indicates degradation of mRNA and protein as a potential regulation mechanisms during cold acclimation.

Published in:

Journal of Plant Research, 2021, v. 134, n. 4, p. 873, doi. 10.1007/s10265-021-01294-4

By:

Krantz, Maria;
Legen, Julia;
Gao, Yang;
Zoschke, Reimo;
Schmitz-Linneweber, Christian;
Klipp, Edda

Publication type:

Article

BooleSim: an interactive Boolean network simulator.

Published in:

Bioinformatics, 2014, v. 30, n. 1, p. 131, doi. 10.1093/bioinformatics/btt568

By:

Bock, Matthias;
Scharp, Till;
Talnikar, Chaitanya;
Klipp, Edda

Publication type:

Article

Biographer: web-based editing and rendering of SBGN compliant biochemical networks.

Published in:

Bioinformatics, 2013, v. 29, n. 11, p. 1467, doi. 10.1093/bioinformatics/btt159

By:

Krause, Falko;
Schulz, Marvin;
Ripkens, Ben;
Flöttmann, Max;
Krantz, Marcus;
Klipp, Edda;
Handorf, Thomas

Publication type:

Article

Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1528, doi. 10.1093/bioinformatics/btq141

By:

Liebermeister, Wolfram;
Uhlendorf, Jannis;
Klipp, Edda

Publication type:

Article