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Gene expression gradients along the tonotopic axis of the chicken auditory epithelium.
- Published in:
- 2011
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- Publication type:
- journal article
Featured Cover.
- Published in:
- Aging Cell, 2023, v. 22, n. 2, p. 1, doi. 10.1111/acel.13801
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- Publication type:
- Article
Platelet response to influenza vaccination reflects effects of aging.
- Published in:
- Aging Cell, 2023, v. 22, n. 2, p. 1, doi. 10.1111/acel.13749
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- Publication type:
- Article
AIRR Community Standardized Representations for Annotated Immune Repertoires.
- Published in:
- Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02206
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- Publication type:
- Article
Local Clonal Diversification and Dissemination of B Lymphocytes in the Human Bronchial Mucosa.
- Published in:
- Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.01976
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- Publication type:
- Article
The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
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- Frontiers in Immunology, 2018, p. 1, doi. 10.3389/fimmu.2018.01877
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- Publication type:
- Article
Optimized Threshold Inference for Partitioning of Clones From High-Throughput B Cell Repertoire Sequencing Data.
- Published in:
- Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.01687
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- Publication type:
- Article
Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data.
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- Frontiers in Immunology, 2017, p. 1, doi. 10.3389/fimmu.2017.01418
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- Publication type:
- Article
The immune cell infiltrate populating meningiomas is composed of mature, antigen-experienced T and B cells.
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- Neuro-Oncology, 2013, v. 15, n. 11, p. 1479, doi. 10.1093/neuonc/not110
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- Publication type:
- Article
Language model-based B cell receptor sequence embeddings can effectively encode receptor specificity.
- Published in:
- Nucleic Acids Research, 2024, v. 52, n. 2, p. 548, doi. 10.1093/nar/gkad1128
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- Publication type:
- Article
IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 16, p. e86, doi. 10.1093/nar/gkad603
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- Publication type:
- Article
Alignment free identification of clones in B cell receptor repertoires.
- Published in:
- Nucleic Acids Research, 2021, v. 49, n. 4, p. e21, doi. 10.1093/nar/gkaa1160
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- Publication type:
- Article
RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 20, p. 9624, doi. 10.1093/nar/gkw633
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- Publication type:
- Article
Quantitative set analysis for gene expression: a method to quantify gene set differential expression including gene-gene correlations.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 18, p. e170, doi. 10.1093/nar/gkt660
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- Publication type:
- Article
Host-microbe multiomic profiling reveals age-dependent immune dysregulation associated with COVID-19 immunopathology.
- Published in:
- Science Translational Medicine, 2024, v. 16, n. 743, p. 1, doi. 10.1126/scitranslmed.adj5154
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- Publication type:
- Article
CD23<sup>+</sup>IgG1<sup>+</sup> memory B cells are poised to switch to pathogenic IgE production in food allergy.
- Published in:
- Science Translational Medicine, 2024, v. 16, n. 733, p. 1, doi. 10.1126/scitranslmed.adi0673
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- Publication type:
- Article
Phylogenetic analysis of migration, differentiation, and class switching in B cells.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pcbi.1009885
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- Publication type:
- Article
Intranasal priming induces local lung-resident B cell populations that secrete protective mucosal antiviral IgA.
- Published in:
- Science Immunology, 2021, v. 6, n. 66, p. 1, doi. 10.1126/sciimmunol.abj5129
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- Publication type:
- Article
Immunophenotyping assessment in a COVID-19 cohort (IMPACC): A prospective longitudinal study.
- Published in:
- Science Immunology, 2021, v. 6, n. 62, p. 1, doi. 10.1126/sciimmunol.abf3733
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- Publication type:
- Article
Interleukin-10 from CD4<sup>+</sup> follicular regulatory T cells promotes the germinal center response.
- Published in:
- Science Immunology, 2017, v. 2, n. 16, p. 1, doi. 10.1126/sciimmunol.aan4767
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- Publication type:
- Article
The center for expanded data annotation and retrieval.
- Published in:
- 2015
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- Publication type:
- journal article
Salmonella Typhimurium Type III Secretion Effectors Stimulate Innate Immune Responses in Cultured Epithelial Cells.
- Published in:
- PLoS Pathogens, 2009, v. 5, n. 8, p. 1, doi. 10.1371/journal.ppat.1000538
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- Publication type:
- Article
Getting Started in Computational Immunology.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000128
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- Publication type:
- Article
A supervised Bayesian factor model for the identification of multi-omics signatures.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae202
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- Publication type:
- Article
A spectral clustering-based method for identifying clones from high-throughput B cell repertoire sequencing data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 13, p. i341, doi. 10.1093/bioinformatics/bty235
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- Publication type:
- Article
Multiple network-constrained regressions expand insights into influenza vaccination responses.
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- Bioinformatics, 2017, v. 33, n. 14, p. i208, doi. 10.1093/bioinformatics/btx260
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- Publication type:
- Article
Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data.
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- Bioinformatics, 2015, v. 31, n. 20, p. 3356, doi. 10.1093/bioinformatics/btv359
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- Publication type:
- Article
Antibody gene features associated with binding and functional activity in malaria vaccine-derived human mAbs.
- Published in:
- NPJ Vaccines, 2024, v. 9, n. 1, p. 1, doi. 10.1038/s41541-024-00929-6
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- Publication type:
- Article
Age-associated vascular inflammation promotes monocytosis during atherogenesis.
- Published in:
- Aging Cell, 2016, v. 15, n. 4, p. 766, doi. 10.1111/acel.12488
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- Publication type:
- Article
Biomedical Model Fitting and Error Analysis.
- Published in:
- Science Signaling, 2011, v. 4, n. 192, p. 1, doi. 10.1126/scisignal.2001983
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- Publication type:
- Article
Single cell immune profiling of dengue virus patients reveals intact immune responses to Zika virus with enrichment of innate immune signatures.
- Published in:
- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 3, p. 1, doi. 10.1371/journal.pntd.0008112
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- Publication type:
- Article
A structured model for immune exposures.
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- Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa016
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- Publication type:
- Article
LinkedImm: a linked data graph database for integrating immunological data.
- Published in:
- BMC Bioinformatics, 2021, v. 22, p. 1, doi. 10.1186/s12859-021-04031-9
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- Publication type:
- Article
Gene set meta-analysis with Quantitative Set Analysis for Gene Expression (QuSAGE).
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006899
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- Publication type:
- Article
NLRP10 is a NOD-like receptor essential to initiate adaptive immunity by dendritic cells.
- Published in:
- Nature, 2012, v. 484, n. 7395, p. 510, doi. 10.1038/nature11012
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- Publication type:
- Article
pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.
- Published in:
- Bioinformatics, 2014, v. 30, n. 13, p. 1930, doi. 10.1093/bioinformatics/btu138
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- Publication type:
- Article
Production of IL-10 by CD4<sup>+</sup> regulatory T cells during the resolution of infection promotes the maturation of memory CD8<sup>+</sup> T cells.
- Published in:
- Nature Immunology, 2015, v. 16, n. 8, p. 871, doi. 10.1038/ni.3224
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- Publication type:
- Article
CD80 and PD-L2 define functionally distinct memory B cell subsets that are independent of antibody isotype.
- Published in:
- Nature Immunology, 2014, v. 15, n. 7, p. 631, doi. 10.1038/ni.2914
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- Publication type:
- Article
B Cell Mobilization, Dissemination, Fine Tuning of Local Antigen Specificity and Isotype Selection in Asthma.
- Published in:
- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.702074
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- Publication type:
- Article
Prolonged Proinflammatory Cytokine Production in Monocytes Modulated by Interleukin 10 After Influenza Vaccination in Older Adults.
- Published in:
- Journal of Infectious Diseases, 2015, v. 211, n. 7, p. 1174, doi. 10.1093/infdis/jiu573
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- Publication type:
- Article
Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 6, p. 1, doi. 10.1186/1471-2105-14-S6-S1
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- Publication type:
- Article
Cell subset prediction for blood genomic studies.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 258, doi. 10.1186/1471-2105-12-258
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- Publication type:
- Article
Corrigendum: Long-lived antigen-induced IgM plasma cells demonstrate somatic mutations and contribute to long-term protection.
- Published in:
- Nature Communications, 2016, v. 7, n. 8, p. 12687, doi. 10.1038/ncomms12687
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- Publication type:
- Article
Long-lived antigen-induced IgM plasma cells demonstrate somatic mutations and contribute to long-term protection.
- Published in:
- Nature Communications, 2016, v. 7, n. 6, p. 11826, doi. 10.1038/ncomms11826
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- Publication type:
- Article
Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells.
- Published in:
- Nature Communications, 2016, v. 7, n. 3, p. 11112, doi. 10.1038/ncomms11112
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- Publication type:
- Article
Shared VH1-46 gene usage by pemphigus vulgaris autoantibodies indicates common humoral immune responses among patients.
- Published in:
- Nature Communications, 2014, v. 5, n. 6, p. 4167, doi. 10.1038/ncomms5167
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- Publication type:
- Article
Gene Expression Analysis of Forskolin Treated Basilar Papillae Identifies MicroRNA181a as a Mediator of Proliferation.
- Published in:
- PLoS ONE, 2010, v. 5, n. 7, p. 1, doi. 10.1371/journal.pone.0011502
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- Publication type:
- Article
Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism.
- Published in:
- BMC Immunology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12865-015-0107-y
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- Publication type:
- Article
Comparative analysis of anti-viral transcriptomics reveals novel effects of influenza immune antagonism.
- Published in:
- BMC Immunology, 2015, v. 16, n. 1, p. 46, doi. 10.1186/s12865-015-0107-y
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- Publication type:
- Article
A pipeline for the retrieval and extraction of domain-specific information with application to COVID-19 immune signatures.
- Published in:
- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05397-8
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- Publication type:
- Article