Works by Kleiner, Manuel

Results: 27

Data‐Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome.

Published in:

Proteomics, 2025, v. 25, n. 9/10, p. 1, doi. 10.1002/pmic.202400187

By:

Rajczewski, Andrew T.;
Blakeley‐Ruiz, J. Alfredo;
Meyer, Annaliese;
Vintila, Simina;
McIlvin, Matthew R.;
Van Den Bossche, Tim;
Searle, Brian C.;
Griffin, Timothy J.;
Saito, Mak A.;
Kleiner, Manuel;
Jagtap, Pratik D.

Publication type:

Article

Drought stress homogenizes maize growth responses to diverse natural soil microbiomes.

Published in:

Plant & Soil, 2025, v. 509, n. 1, p. 181, doi. 10.1007/s11104-024-06853-x

By:

Swift, Joel F.;
Kolp, Matthew R.;
Carmichael, Amanda;
Ford, Natalie E.;
Hansen, Paige M.;
Sikes, Benjamin A.;
Kleiner, Manuel;
Wagner, Maggie R.

Publication type:

Article

Metabolic handoffs between multiple symbionts may benefit the deep-sea bathymodioline mussels.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00254-4

By:

Zvi-Kedem, Tal;
Vintila, Simina;
Kleiner, Manuel;
Tchernov, Dan;
Rubin-Blum, Maxim

Publication type:

Article

Assessing species biomass contributions in microbial communities via metaproteomics.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01544-x

By:

Thorson, Erin;
Sharp, Christine E.;
Xiaoli Dong;
Dan Liu;
Strous, Marc;
Kleiner, Manuel;
Carmen Li

Publication type:

Article

Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 340, doi. 10.1186/s12864-014-1207-4

By:

Kleiner, Manuel;
Hooper, Lora V.;
Duerkop, Breck A.

Publication type:

Article

Five key aspects of metaproteomics as a tool to understand functional interactions in host-associated microbiomes.

Published in:

PLoS Pathogens, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.ppat.1009245

By:

Salvato, Fernanda;
Hettich, Robert L.;
Kleiner, Manuel

Publication type:

Article

Closely coupled evolutionary history of ecto- and endosymbionts from two distantly related animal phyla.

Published in:

Molecular Ecology, 2016, v. 25, n. 13, p. 3203, doi. 10.1111/mec.13554

By:

Zimmermann, Judith;
Wentrup, Cecilia;
Sadowski, Miriam;
Blazejak, Anna;
Gruber‐Vodicka, Harald R.;
Kleiner, Manuel;
Ott, Jörg A.;
Cronholm, Bodil;
De Wit, Pierre;
Erséus, Christer;
Dubilier, Nicole

Publication type:

Article

A shared core microbiome in soda lakes separated by large distances.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12195-5

By:

Zorz, Jackie K.;
Sharp, Christine;
Kleiner, Manuel;
Gordon, Paul M. K.;
Pon, Richard T.;
Dong, Xiaoli;
Strous, Marc

Publication type:

Article

Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes.

Published in:

Microbiome, 2023, v. 11, n. 1, p. 1, doi. 10.1186/s40168-022-01454-1

By:

Kleiner, Manuel;
Kouris, Angela;
Violette, Marlene;
D'Angelo, Grace;
Liu, Yihua;
Korenek, Abigail;
Tolić, Nikola;
Sachsenberg, Timo;
McCalder, Janine;
Lipton, Mary S.;
Strous, Marc

Publication type:

Article

Fidelity varies in the symbiosis between a gutless marine worm and its microbial consortium.

Published in:

Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01372-2

By:

Sato, Yui;
Wippler, Juliane;
Wentrup, Cecilia;
Ansorge, Rebecca;
Sadowski, Miriam;
Gruber-Vodicka, Harald;
Dubilier, Nicole;
Kleiner, Manuel

Publication type:

Article

Genome sequence of the sulfur-oxidizing Bathymodiolus thermophilus gill endosymbiont.

Published in:

Standards in Genomic Sciences, 2017, v. 12, n. 1, p. 1, doi. 10.1186/s40793-017-0266-y

By:

Ponnudurai, Ruby;
Sayavedra, Lizbeth;
Kleiner, Manuel;
Heiden, Stefan;
Thürmer, Andrea;
Felbeck, Horst;
Schlüter, Rabea;
Sievert, Stefan;
Daniel, Rolf;
Schweder, Thomas;
Markert, Stephanie

Publication type:

Article

Synergy of Sodium Nitroprusside and Nitrate in Inhibiting the Activity of Sulfate Reducing Bacteria in Oil-Containing Bioreactors.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00981

By:

Fida, Tekle T.;
Voordouw, Johanna;
Ataeian, Maryam;
Kleiner, Manuel;
Okpala, Gloria;
Mand, Jaspreet;
Voordouw, Gerrit

Publication type:

Article

Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00938

By:

Zorz, Jackie K.;
Kozlowski, Jessica A.;
Stein, Lisa Y.;
Strous, Marc;
Kleiner, Manuel

Publication type:

Article

Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01461

By:

Xiaoli Dong;
Kleiner, Manuel;
Sharp, Christine E.;
Thorson, Erin;
Li, Carmen;
Dan Liu;
Strous, Marc

Publication type:

Article

IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss.

Published in:

Plant Molecular Biology, 2024, v. 114, n. 2, p. 1, doi. 10.1007/s11103-024-01422-3

By:

Hornstein, Eli D.;
Charles, Melodi;
Franklin, Megan;
Edwards, Brianne;
Vintila, Simina;
Kleiner, Manuel;
Sederoff, Heike

Publication type:

Article

Pseudo-pac site sequences used by phage P22 in generalized transduction of Salmonella.

Published in:

PLoS Pathogens, 2024, v. 20, n. 6, p. 1, doi. 10.1371/journal.ppat.1012301

By:

Maier, Jessie L.;
Gin, Craig;
Callahan, Benjamin;
Sheriff, Emma K.;
Duerkop, Breck A.;
Kleiner, Manuel

Publication type:

Article

Use of carbon monoxide and hydrogen by a bacteria--animal symbiosis from seagrass sediments.

Published in:

Environmental Microbiology, 2015, v. 17, n. 12, p. 5023, doi. 10.1111/1462-2920.12912

By:

Kleiner, Manuel;
Wentrup, Cecilia;
Holler, Thomas;
Lavik, Gaute;
Harder, Jens;
Lott, Christian;
Littmann, Sten;
Kuypers, Marcel M. M.;
Dubilier, Nicole

Publication type:

Article

Status quo in physiological proteomics of the uncultured Riftia pachyptila endosymbiont.

Published in:

Proteomics, 2011, v. 11, n. 15, p. 3106, doi. 10.1002/pmic.201100059

By:

Markert, Stephanie;
Gardebrecht, Antje;
Felbeck, Horst;
Sievert, Stefan M.;
Klose, Julia;
Becher, Dörte;
Albrecht, Dirk;
Thürmer, Andrea;
Daniel, Rolf;
Kleiner, Manuel;
Hecker, Michael;
Schweder, Thomas

Publication type:

Article

More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00238

By:

Hinzke, Tjorven;
Kouris, Angela;
Hughes, Rebecca-Ayme;
Strous, Marc;
Kleiner, Manuel

Publication type:

Article

Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities.

Published in:

Microbiome, 2020, v. 8, n. 1, p. 1, doi. 10.1186/s40168-020-00935-5

By:

Kleiner, Manuel;
Bushnell, Brian;
Sanderson, Kenneth E.;
Hooper, Lora V.;
Duerkop, Breck A.

Publication type:

Article

Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3293-y

By:

Wippler, Juliane;
Kleiner, Manuel;
Lott, Christian;
Gruhl, Alexander;
Abraham, Paul E.;
Giannone, Richard J.;
Young, Jacque C.;
Hettich, Robert L.;
Dubilier, Nicole

Publication type:

Article

Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.58371

By:

Hinzke, Tjorven;
Kleiner, Manuel;
Meister, Mareike;
Schlüter, Rabea;
Hentschker, Christian;
Pané-Farré, Jan;
Hildebrandt, Petra;
Felbeck, Horst;
Sievert, Stefan M.;
Bonn, Florian;
Völker, Uwe;
Becher, Dörte;
Schweder, Thomas;
Markert, Stephanie

Publication type:

Article

Elucidating Plant-Microbe-Environment Interactions Through Omics-Enabled Metabolic Modelling Using Synthetic Communities.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.910377

By:

Beck, Ashley E.;
Kleiner, Manuel;
Garrell, Anna-Katharina

Publication type:

Article

Enterococcal quorum-controlled protease alters phage infection.

Published in:

FEMS Microbes, 2024, v. 5, p. 1, doi. 10.1093/femsmc/xtae022

By:

Sheriff, Emma K;
Salvato, Fernanda;
Andersen, Shelby E;
Chatterjee, Anushila;
Kleiner, Manuel;
Duerkop, Breck A

Publication type:

Article

Comparative proteomics of related symbiotic mussel species reveals high variability of host–symbiont interactions.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 2, p. 649, doi. 10.1038/s41396-019-0517-6

By:

Ponnudurai, Ruby;
Heiden, Stefan E.;
Sayavedra, Lizbeth;
Hinzke, Tjorven;
Kleiner, Manuel;
Hentschker, Christian;
Felbeck, Horst;
Sievert, Stefan M.;
Schlüter, Rabea;
Becher, Dörte;
Schweder, Thomas;
Markert, Stephanie

Publication type:

Article

Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria).

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 1, p. 104, doi. 10.1038/s41396-019-0508-7

By:

Assié, Adrien;
Leisch, Nikolaus;
Meier, Dimitri V.;
Gruber-Vodicka, Harald;
Tegetmeyer, Halina E.;
Meyerdierks, Anke;
Kleiner, Manuel;
Hinzke, Tjorven;
Joye, Samantha;
Saxton, Matthew;
Dubilier, Nicole;
Petersen, Jillian M.

Publication type:

Article

Metabolic and physiological interdependencies in the Bathymodiolus azoricus symbiosis.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 2, p. 463, doi. 10.1038/ismej.2016.124

By:

Ponnudurai, Ruby;
Kleiner, Manuel;
Sayavedra, Lizbeth;
Petersen, Jillian M;
Moche, Martin;
Otto, Andreas;
Becher, Dörte;
Takeuchi, Takeshi;
Satoh, Noriyuki;
Dubilier, Nicole;
Schweder, Thomas;
Markert, Stephanie

Publication type:

Article