Works by Kleerebezem, Michiel

Results: 93

Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 1, p. 66, doi. 10.1038/nrmicro2690

By:

Bron, Peter A.;
van Baarlen, Peter;
Kleerebezem, Michiel

Publication type:

Article

Exopolysaccharides produced by lactic acid bacteria: from health-promoting benefits to stress tolerance mechanisms.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 9, p. 3877, doi. 10.1007/s00253-016-7471-2

By:

Caggianiello, Graziano;
Kleerebezem, Michiel;
Spano, Giuseppe

Publication type:

Article

10 years of the nisin-controlled gene expression system (NICE) in Lactococcus lactis.

Published in:

Applied Microbiology & Biotechnology, 2005, v. 68, n. 6, p. 705, doi. 10.1007/s00253-005-0107-6

By:

Mierau, Igor;
Kleerebezem, Michiel

Publication type:

Article

Towards microbial fermentation metabolites as markers for health benefits of prebiotics.

Published in:

Nutrition Research Reviews, 2015, v. 28, n. 1, p. 42, doi. 10.1017/S0954422415000037

By:

Verbeke, Kristin A.;
Boobis, Alan R.;
Chiodini, Alessandro;
Edwards, Christine A.;
Franck, Anne;
Kleerebezem, Michiel;
Nauta, Arjen;
Raes, Jeroen;
van Tol, Eric A. F.;
Tuohy, Kieran M.

Publication type:

Article

KREAP: an automated Galaxy platform to quantify in vitro re-epithelialization kinetics.

Published in:

GigaScience, 2018, v. 7, n. 7, p. N.PAG, doi. 10.1093/gigascience/giy078

By:

Fernandez-Gutierrez, Marcela M;
van Zessen, David B H;
van Baarlen, Peter;
Kleerebezem, Michiel;
Stubbs, Andrew P

Publication type:

Article

Early feeding leads to molecular maturation of the gut mucosal immune system in suckling piglets.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1208891

By:

Choudhury, Raka;
Yuner Gu;
Bolhuis, J. Elizabeth;
Kleerebezem, Michiel

Publication type:

Article

Temporal and spatial interplay of microbiota and intestinal mucosa drive establishment of immune homeostasis in conventionalized mice.

Published in:

Mucosal Immunology (1933-0219), 2012, v. 5, n. 5, p. 567, doi. 10.1038/mi.2012.32

By:

El Aidy, Sahar;
van Baarlen, Peter;
Derrien, Muriel;
Lindenbergh-Kortleve, Dicky J;
Hooiveld, Guido;
Levenez, Florence;
Doré, Joël;
Dekker, Jan;
Samsom, Janneke N;
Nieuwenhuis, Edward E S;
Kleerebezem, Michiel

Publication type:

Article

Conversion of Lactococcus lactis from homolactic to homoalanine fermentation through metabolic engineering.

Published in:

Nature Biotechnology, 1999, v. 17, n. 6, p. 588, doi. 10.1038/9902

By:

Hols, Pascal;
Kleerebezem, Michiel;
Schanck, André N.;
Ferain, Thierry;
Hugenholtz, Jeroen;
Delcour, Jean;
de Vos, Willem M.

Publication type:

Article

The lactococcal ICE-ome encodes a repertoire of exchangeable traits with potential industrial relevance.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10646-y

By:

van der Els, Simon;
Boekhorst, Jos;
Bron, Peter A.;
Kleerebezem, Michiel

Publication type:

Article

Detection and classification of the integrative conjugative elements of Lactococcus lactis.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10255-9

By:

van der Els, Simon;
Sheombarsing, Reshtrie;
van Kempen, Thijn;
Wels, Michiel;
Boekhorst, Jos;
Bron, Peter A.;
Kleerebezem, Michiel

Publication type:

Article

Omics and imaging combinatorial approach reveals butyrate-induced inflammatory effects in the zebrafish gut.

Published in:

Animal Microbiome, 2023, v. 5, n. 1, p. 1, doi. 10.1186/s42523-023-00230-2

By:

López Nadal, Adrià;
Boekhorst, Jos;
Lute, Carolien;
van den Berg, Frank;
Schorn, Michelle A.;
Bergen Eriksen, Tommy;
Peggs, David;
McGurk, Charles;
Sipkema, Detmer;
Kleerebezem, Michiel;
Wiegertjes, Geert F.;
Brugman, Sylvia

Publication type:

Article

Lipoproteins Contribute to the Anti-inflammatory Capacity of Lactobacillus plantarum WCFS1.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.01822

By:

Lee, I-Chiao;
van Swam, Iris I.;
Boeren, Sjef;
Vervoort, Jacques;
Meijerink, Marjolein;
Taverne, Nico;
Starrenburg, Marjo;
Bron, Peter A.;
Kleerebezem, Michiel

Publication type:

Article

Quorum sensing by peptide pheromones and two-component signal-transduction systems in Gram-positive bacteria.

Published in:

Molecular Microbiology, 1997, v. 24, n. 6, p. 895, doi. 10.1046/j.1365-2958.1997.4251782.x

By:

Kleerebezem, Michiel;
Quadri, Luis E. N.;
Kuipers, Oscar P.;
De Vos, Willem M.

Publication type:

Article

Characterization of an Escherichia coli rotA mutant, affected in periplasmic peptidyl-prolyl cis/trans isomerase.

Published in:

Molecular Microbiology, 1995, v. 18, n. 2, p. 313, doi. 10.1111/j.1365-2958.1995.mmi_18020313.x

By:

Kleerebezem, Michiel;
Heutink, Marja;
Tommassen, Jan

Publication type:

Article

Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 9, p. 2844, doi. 10.1093/nar/gkl370

By:

Wels, Michiel;
Francke, Christof;
Kerkhoven, Robert;
Kleerebezem, Michiel;
Siezen, Roland J.

Publication type:

Article

Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 7, p. 1947, doi. 10.1093/nar/gkl138

By:

Wels, Michiel;
Francke, Christof;
Kerkhoven, Robert;
Kleerebezem, Michiel;
Siezen, Roland J.

Publication type:

Article

Identification of Lactobacillus plantarum genes modulating the cytokine response of human peripheral blood mononuclear cells.

Published in:

BMC Microbiology, 2010, v. 10, p. 293, doi. 10.1186/1471-2180-10-293

By:

van Hemert, Saskia;
Meijerink, Marjolein;
Molenaar, Douwe;
Bron, Peter A.;
de Vos, Paul;
Kleerebezem, Michiel;
Wells, Jerry M.;
Marco, Maria L.

Publication type:

Article

The impact of probiotics and prebiotics on the immune system.

Published in:

Nature Reviews Immunology, 2012, v. 12, n. 10, p. 728, doi. 10.1038/nri3312

By:

Klaenhammer, Todd R.;
Kleerebezem, Michiel;
Kopp, Matthias Volkmar;
Rescigno, Maria

Publication type:

Article

Assessing the Impact of Diet on the Mucosa-Adhered Microbiome in Piglets Using Comparative Analysis of Rectal Swabs and Colon Content.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.804986

By:

Choudhury, Raka;
Kleerebezem, Michiel

Publication type:

Article

The Possible Link Between Manufacturing and Probiotic Efficacy; a Molecular Point of View on Bifidobacterium.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.812536

By:

Duboux, Stéphane;
Van Wijchen, Myrthe;
Kleerebezem, Michiel

Publication type:

Article

Colonizing Microbes, IL-10 and IL-22: Keeping the Peace at the Mucosal Surface.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.729053

By:

Kidess, Evelien;
Kleerebezem, Michiel;
Brugman, Sylvia

Publication type:

Article

Sialyllactose and Galactooligosaccharides Promote Epithelial Barrier Functioning and Distinctly Modulate Microbiota Composition and Short Chain Fatty Acid Production In Vitro.

Published in:

Frontiers in Immunology, 2019, p. N.PAG, doi. 10.3389/fimmu.2019.00094

By:

Perdijk, Olaf;
van Baarlen, Peter;
Fernandez-Gutierrez, Marcela M.;
van den Brink, Erik;
Schuren, Frank H. J.;
Brugman, Sylvia;
Savelkoul, Huub F. J.;
Kleerebezem, Michiel;
van Neerven, R. J. Joost

Publication type:

Article

Nomadic lifestyle of Lactobacillus plantarum revealed by comparative genomics of 54 strains isolated from different habitats.

Published in:

Environmental Microbiology, 2016, v. 18, n. 12, p. 4974, doi. 10.1111/1462-2920.13455

By:

Martino, Maria Elena;
Bayjanov, Jumamurat R.;
Caffrey, Brian E.;
Wels, Michiel;
Joncour, Pauline;
Hughes, Sandrine;
Gillet, Benjamin;
Kleerebezem, Michiel;
van Hijum, Sacha A.F.T.;
Leulier, François

Publication type:

Article

Physiological and cell morphology adaptation of Bacillus subtilis at near-zero specific growth rates: a transcriptome analysis.

Published in:

Environmental Microbiology, 2015, v. 17, n. 2, p. 346, doi. 10.1111/1462-2920.12676

By:

Overkamp, Wout;
Ercan, Onur;
Herber, Martijn;
Maris, Antonius J. A.;
Kleerebezem, Michiel;
Kuipers, Oscar P.

Publication type:

Article

Quantitative physiology of Lactococcus lactis at extreme low-growth rates.

Published in:

Environmental Microbiology, 2013, v. 15, n. 8, p. 2319, doi. 10.1111/1462-2920.12104

By:

Ercan, Onur;
Smid, Eddy J.;
Kleerebezem, Michiel

Publication type:

Article

Arabinoxylans and inulin differentially modulate the mucosal and luminal gut microbiota and mucin-degradation in humanized rats.

Published in:

Environmental Microbiology, 2011, v. 13, n. 10, p. 2667, doi. 10.1111/j.1462-2920.2011.02533.x

By:

Van den Abbeele, Pieter;
Gérard, Philippe;
Rabot, Sylvie;
Bruneau, Aurélia;
El Aidy, Sahar;
Derrien, Muriel;
Kleerebezem, Michiel;
Zoetendal, Erwin G.;
Smidt, Hauke;
Verstraete, Willy;
Van de Wiele, Tom;
Possemiers, Sam

Publication type:

Article

High temporal and inter-individual variation detected in the human ileal microbiota.

Published in:

Environmental Microbiology, 2010, v. 12, n. 12, p. 3213, doi. 10.1111/j.1462-2920.2010.02294.x

By:

Booijink, Carien C. G. M.;
El-Aidy, Sahar;
Rajilić-Stojanović, Mirjana;
Heilig, Hans G. H. J.;
Troost, Freddy J.;
Smidt, Hauke;
Kleerebezem, Michiel;
De Vos, Willem M.;
Zoetendal, Erwin G.

Publication type:

Article

Time-resolved genetic responses of Lactococcus lactis to a dairy environment.

Published in:

Environmental Microbiology, 2010, v. 12, n. 5, p. 1260, doi. 10.1111/j.1462-2920.2010.02168.x

By:

Bachmann, Herwig;
de Wilt, Leonie;
Kleerebezem, Michiel;
van Hylckama Vlieg, Johan E. T.

Publication type:

Article

Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches.

Published in:

Environmental Microbiology, 2010, v. 12, n. 3, p. 758, doi. 10.1111/j.1462-2920.2009.02119.x

By:

Siezen, Roland J.;
Tzeneva, Vesela A.;
Castioni, Anna;
Wels, Michiel;
Phan, Hoa T. K.;
Rademaker, Jan L. W.;
Starrenburg, Marjo J. C.;
Kleerebezem, Michiel;
Molenaar, Douwe;
van Hylckama Vlieg, Johan E. T.

Publication type:

Article

Lifestyle of Lactobacillus plantarum in the mouse caecum.

Published in:

Environmental Microbiology, 2009, v. 11, n. 10, p. 2747, doi. 10.1111/j.1462-2920.2009.02001.x

By:

Marco, Maria L.;
Peters, Theodorus H. F.;
Bongers, Roger S.;
Molenaar, Douwe;
van Hemert, Saskia;
Sonnenburg, Justin L.;
Gordon, Jeffrey I.;
Kleerebezem, Michiel

Publication type:

Article

The Variable Regions of Lactobacillus rhamnosus Genomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 6, p. 1889, doi. 10.1093/gbe/evw123

By:

Ceapa, Corina;
Davids, Mark;
Ritari, Jarmo;
Lambert, Jolanda;
Wels, Michiel;
Douillard, François P.;
Smokvina, Tamara;
de Vos, Willem M.;
Knol, Jan;
Kleerebezem, Michiel

Publication type:

Article

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0146423

By:

Davids, Mark;
Hugenholtz, Floor;
Martins dos Santos, Vitor;
Smidt, Hauke;
Kleerebezem, Michiel;
Schaap, Peter J.

Publication type:

Article

The human gut microbiome: are we our enterotypes?

Published in:

Microbial Biotechnology, 2011, v. 4, n. 5, p. 550, doi. 10.1111/j.1751-7915.2011.00290.x

By:

Siezen, Roland J.;
Kleerebezem, Michiel

Publication type:

Article

Reconstruction of the regulatory network of Lactobacillus plantarum WCFS1 on basis of correlated gene expression and conserved regulatory motifs.

Published in:

Microbial Biotechnology, 2011, v. 4, n. 3, p. 333, doi. 10.1111/j.1751-7915.2010.00217.x

By:

Wels, Michiel;
Overmars, Lex;
Francke, Christof;
Kleerebezem, Michiel;
Siezen, Roland J.

Publication type:

Article

Functional analysis of the role of CggR (central glycolytic gene regulator) in Lactobacillus plantarum by transcriptome analysis.

Published in:

Microbial Biotechnology, 2011, v. 4, n. 3, p. 345, doi. 10.1111/j.1751-7915.2010.00223.x

By:

Rud, Ida;
Naterstad, Kristine;
Bongers, Roger S.;
Molenaar, Douwe;
Kleerebezem, Michiel;
Axelsson, Lars

Publication type:

Article

Lactic acid bacteria: life after genomics.

Published in:

Microbial Biotechnology, 2011, v. 4, n. 3, p. 318, doi. 10.1111/j.1751-7915.2011.00262.x

By:

Kleerebezem, Michiel;
de Vos, Willem M.

Publication type:

Article

Human milk extracellular vesicles target nodes in interconnected signalling pathways that enhance oral epithelial barrier function and dampen immune responses.

Published in:

Journal of Extracellular Vesicles, 2021, v. 10, n. 5, p. 1, doi. 10.1002/jev2.12071

By:

Zonneveld, Marijke I.;
Herwijnen, Martijn J.C.;
Fernandez‐Gutierrez, Marcela M.;
Giovanazzi, Alberta;
Groot, Anne Marit;
Kleinjan, Marije;
Capel, Toni M.M.;
Sijts, Alice J.A.M.;
Taams, Leonie S.;
Garssen, Johan;
Jong, Esther C.;
Kleerebezem, Michiel;
Nolte‐'t Hoen, Esther N.M.;
Redegeld, Frank A.;
Wauben, Marca H.M.

Publication type:

Article

Prebiotic utilisation provides Lactiplantibacillus plantarum a competitive advantage in vitro, but is not reflected by an increased intestinal fitness.

Published in:

Gut Microbes, 2024, v. 16, n. 1, p. 1, doi. 10.1080/19490976.2024.2338946

By:

Fuhren, Jori;
Schwalbe, Markus;
Boekhorst, Jos;
Rösch, Christiane;
Schols, Henk A.;
Kleerebezem, Michiel

Publication type:

Article

L. rhamnosus CNCM I-3690 survival, adaptation, and small bowel microbiome impact in human.

Published in:

Gut Microbes, 2023, v. 15, n. 1, p. 1, doi. 10.1080/19490976.2023.2244720

By:

Zaccaria, Edoardo;
Klaassen, Tim;
Alleleyn, Annick M. E.;
Boekhorst, Jos;
Chervaux, Christian;
Smokvina, Tamara;
Troost, Freddy J.;
Kleerebezem, Michiel

Publication type:

Article

T lymphocytes control microbial composition by regulating the abundance of Vibrio in the zebrafish gut.

Published in:

Gut Microbes, 2014, v. 5, n. 6, p. 737, doi. 10.4161/19490976.2014.972228

By:

Brugman, Sylvia;
Schneeberger, Kerstin;
Witte, Merlijn;
Klein, Mark R;
van den Bogert, Bartholomeus;
Boekhorst, Jos;
Timmerman, Harro M;
Boes, Marianne L;
Kleerebezem, Michiel;
Nieuwenhuis, Edward ES

Publication type:

Article

The gut microbiota and mucosal homeostasis.

Published in:

Gut Microbes, 2013, v. 4, n. 2, p. 118, doi. 10.4161/gmic.23362

By:

El Aidy, Sahar;
Hooiveld, Guido;
Tremaroli, Valentina;
Bäckhed, Fredrik;
Kleerebezem, Michiel

Publication type:

Article

Metatranscriptome analysis of the microbial fermentation of dietary milk proteins in the murine gut.

Published in:

PLoS ONE, 2018, v. 13, n. 4, p. 1, doi. 10.1371/journal.pone.0194066

By:

Hugenholtz, Floor;
Davids, Mark;
Schwarz, Jessica;
Müller, Michael;
Tomé, Daniel;
Schaap, Peter;
Hooiveld, Guido J. E. J.;
Smidt, Hauke;
Kleerebezem, Michiel

Publication type:

Article

In vivo nuclear magnetic resonance studies of glycolytic kinetics in Lactococcus lactis.

Published in:

Biotechnology & Bioengineering, 1999, v. 64, n. 2, p. 200, doi. 10.1002/(SICI)1097-0290(19990720)64:2<200::AID-BIT9>3.0.CO;2-K

By:

Neves, Ana Rute;
Ramos, Ana;
Nunes, Marta C.;
Kleerebezem, Michiel;
Hugenholtz, Jeroen;
de Vos, Willem M.;
Almeida, Jonas;
Santos, Helena

Publication type:

Article

Dietary calcium phosphate strongly impacts gut microbiome changes elicited by inulin and galacto-oligosaccharides consumption.

Published in:

Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01148-0

By:

Fuhren, Jori;
Schwalbe, Markus;
Boekhorst, Jos;
Rösch, Christiane;
Schols, Henk A.;
Kleerebezem, Michiel

Publication type:

Article

Dietary calcium phosphate strongly impacts gut microbiome changes elicited by inulin and galacto-oligosaccharides consumption.

Published in:

Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01148-0

By:

Fuhren, Jori;
Schwalbe, Markus;
Boekhorst, Jos;
Rösch, Christiane;
Schols, Henk A.;
Kleerebezem, Michiel

Publication type:

Article

Intestinal colonization: How key microbial players become established in this dynamic process.

Published in:

BioEssays, 2013, v. 35, n. 10, p. 913, doi. 10.1002/bies.201300073

By:

El Aidy, Sahar;
Van den Abbeele, Pieter;
Van de Wiele, Tom;
Louis, Petra;
Kleerebezem, Michiel

Publication type:

Article

The growth‐survival trade‐off is hard‐wired in the Lactococcus lactis gene regulation network.

Published in:

Environmental Microbiology Reports, 2022, v. 14, n. 4, p. 632, doi. 10.1111/1758-2229.13073

By:

Ercan, Onur;
den Besten, Heidy M. W.;
Smid, Eddy J.;
Kleerebezem, Michiel

Publication type:

Article

On the ecosystemic network of saliva in healthy young adults.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 5, p. 1218, doi. 10.1038/ismej.2016.199

By:

Zaura, Egija;
Brandt, Bernd W;
Prodan, Andrei;
Teixeira de Mattos, Maarten Joost;
Imangaliyev, Sultan;
Kool, Jolanda;
Buijs, Mark J;
Jagers, Ferry LPW;
Hennequin-Hoenderdos, Nienke L;
Slot, Dagmar E;
Nicu, Elena A;
Lagerweij, Maxim D;
Janus, Marleen M;
Fernandez-Gutierrez, Marcela M;
Levin, Evgeni;
Krom, Bastiaan P;
Brand, Henk S;
Veerman, Enno CI;
Kleerebezem, Michiel;
Loos, Bruno G

Publication type:

Article

Multifactorial diversity sustains microbial community stability.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 11, p. 2126, doi. 10.1038/ismej.2013.108

By:

Erkus, Oylum;
de Jager, Victor CL;
Spus, Maciej;
van Alen-Boerrigter, Ingrid J;
van Rijswijck, Irma MH;
Hazelwood, Lucie;
Janssen, Patrick WM;
van Hijum, Sacha AFT;
Kleerebezem, Michiel;
Smid, Eddy J

Publication type:

Article

Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 5, p. 949, doi. 10.1038/ismej.2012.158

By:

Van den Abbeele, Pieter;
Belzer, Clara;
Goossens, Margot;
Kleerebezem, Michiel;
De Vos, Willem M;
Thas, Olivier;
De Weirdt, Rosemarie;
Kerckhof, Frederiek-Maarten;
Van de Wiele, Tom

Publication type:

Article