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DTox: A deep neural network-based in visio lens for large scale toxicogenomics data.
- Published in:
- Journal of Toxicological Sciences, 2024, v. 49, n. 3, p. 105, doi. 10.2131/jts.49.105
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- Publication type:
- Article
Stories of QRIO and PINO, and Beyond: Lessons Learned from Small Humanoid Projects From R&D to Business.
- Published in:
- International Journal of Humanoid Robotics, 2024, v. 21, n. 1, p. 1, doi. 10.1142/S0219843623500275
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- Publication type:
- Article
Auxiliary self-supervision to metric learning for music similarity-based retrieval and auto-tagging.
- Published in:
- PLoS ONE, 2023, v. 18, n. 11, p. 1, doi. 10.1371/journal.pone.0294643
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- Publication type:
- Article
Nicotinamide mononucleotide (NMN) alleviates the poly(I:C)-induced inflammatory response in human primary cell cultures.
- Published in:
- Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-38762-x
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- Publication type:
- Article
eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio–temporal architectures of cells.
- Published in:
- BMC Bioinformatics, 2023, v. 23, n. 6, p. 1, doi. 10.1186/s12859-023-05355-4
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- Publication type:
- Article
The role of the endolithic alga Ostreobium spp. during coral bleaching recovery.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-07017-6
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- Publication type:
- Article
Elucidating gene expression adaptation of phylogenetically divergent coral holobionts under heat stress.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25950-4
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- Publication type:
- Article
Nobel Turing Challenge: creating the engine for scientific discovery.
- Published in:
- NPJ Systems Biology & Applications, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41540-021-00189-3
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- Publication type:
- Article
Artificial intelligence-based computational framework for drug-target prioritization and inference of novel repositionable drugs for Alzheimer's disease.
- Published in:
- Alzheimer's Research & Therapy, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13195-021-00826-3
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- Publication type:
- Article
Publisher Correction: LimeMap: a comprehensive map of lipid mediator metabolic pathways.
- Published in:
- 2021
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- Publication type:
- Correction Notice
Effects of maoto (ma-huang-tang) on host lipid mediator and transcriptome signature in influenza virus infection.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-82707-1
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- Publication type:
- Article
LimeMap: a comprehensive map of lipid mediator metabolic pathways.
- Published in:
- NPJ Systems Biology & Applications, 2021, v. 7, n. 1, p. 1, doi. 10.1038/s41540-020-00163-5
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- Publication type:
- Article
A Geometric Clustering Tool (AGCT) to robustly unravel the inner cluster structures of time-series gene expressions.
- Published in:
- PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0233755
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- Publication type:
- Article
A prospective compound screening contest identified broader inhibitors for Sirtuin 1.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-55069-y
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- Publication type:
- Article
Multi-dimensional computational pipeline for large-scale deep screening of compound effect assessment: an in silico case study on ageing-related compounds.
- Published in:
- NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0119-y
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- Publication type:
- Article
Integrative and theoretical research on the architecture of a biological system and its disorder.
- Published in:
- Journal of Physiological Sciences, 2019, v. 69, n. 3, p. 433, doi. 10.1007/s12576-019-00667-8
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- Publication type:
- Article
Lenvatinib plus anti-PD-1 antibody combination treatment activates CD8<sup>+</sup> T cells through reduction of tumor-associated macrophage and activation of the interferon pathway.
- Published in:
- PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0212513
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- Publication type:
- Article
Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis.
- Published in:
- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5101-3
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- Publication type:
- Article
Deconstructing the traditional Japanese medicine "Kampo": compounds, metabolites and pharmacological profile of maoto, a remedy for flu-like symptoms.
- Published in:
- NPJ Systems Biology & Applications, 2017, v. 3, n. 1, p. N.PAG, doi. 10.1038/s41540-017-0032-1
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- Publication type:
- Article
A machine learning approach for the identification of key markers involved in brain development from single-cell transcriptomic data.
- Published in:
- BMC Genomics, 2016, v. 17, p. 19, doi. 10.1186/s12864-016-3317-7
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- Publication type:
- Article
systemsDock: a web server for network pharmacology-based prediction and analysis.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W507, doi. 10.1093/nar/gkw335
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- Publication type:
- Article
Weighted enrichment method for prediction of transcription regulators from transcriptome and global chromatin immunoprecipitation data.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 11, p. 5010, doi. 10.1093/nar/gkw355
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- Publication type:
- Article
Artificial Intelligence to Win the Nobel Prize and Beyond: Creating the Engine for Scientific Discovery.
- Published in:
- AI Magazine, 2016, v. 37, n. 1, p. 39, doi. 10.1609/aimag.v37i1.2642
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- Publication type:
- Article
CARFMAP: A Curated Pathway Map of Cardiac Fibroblasts.
- Published in:
- PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0143274
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- Publication type:
- Article
Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target.
- Published in:
- Scientific Reports, 2015, p. 17209, doi. 10.1038/srep17209
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- Publication type:
- Article
Lessons from Toxicology: Developing a 21st-century Paradigm for Medical Research.
- Published in:
- Environmental Health Perspectives, 2015, v. 123, n. 11, p. A268, doi. 10.1289/ehp.1510345
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- Publication type:
- Article
Identifying problematic drugs based on the characteristics of their targets.
- Published in:
- Frontiers in Pharmacology, 2015, p. 1, doi. 10.3389/fphar.2015.00186
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- Publication type:
- Article
Databases for multilevel biophysiology research available at Physiome.jp.
- Published in:
- 2015
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- Publication type:
- Product Review
An Ultrasensitive Mechanism Regulates Influenza Virus-Induced Inflammation.
- Published in:
- PLoS Pathogens, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.ppat.1004856
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- Publication type:
- Article
VISIONET: intuitive visualisation of overlapping transcription factor networks, with applications in cardiogenic gene discovery
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 141, doi. 10.1186/s12859-015-0578-0
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- Publication type:
- Article
Oscillation of cAMP and Ca in cardiac myocytes: a systems biology approach.
- Published in:
- Journal of Physiological Sciences, 2015, v. 65, n. 2, p. 195, doi. 10.1007/s12576-014-0354-3
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- Publication type:
- Article
Multi-spectral fluorescent reporter influenza viruses (Color-flu) as powerful tools for in vivo studies.
- Published in:
- Nature Communications, 2015, v. 6, n. 3, p. 6600, doi. 10.1038/ncomms7600
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- Publication type:
- Article
Integrative knowledge management to enhance pharmaceutical R&D.
- Published in:
- Nature Reviews Drug Discovery, 2014, v. 13, n. 4, p. 239, doi. 10.1038/nrd4290
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- Publication type:
- Article
Integrating Pathways of Parkinson's Disease in a Molecular Interaction Map.
- Published in:
- Molecular Neurobiology, 2014, v. 49, n. 1, p. 88, doi. 10.1007/s12035-013-8489-4
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- Publication type:
- Article
Toward an integrated software platform for systems pharmacology.
- Published in:
- Biopharmaceutics & Drug Disposition, 2013, v. 34, n. 9, p. 508, doi. 10.1002/bdd.1875
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- Publication type:
- Article
Combining Machine Learning Systems and Multiple Docking Simulation Packages to Improve Docking Prediction Reliability for Network Pharmacology.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0083922
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- Publication type:
- Article
Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003361
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- Publication type:
- Article
A comprehensive map of the influenza A virus replication cycle.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-97
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- Publication type:
- Article
Modeling of Rifampicin-Induced CYP3A4 Activation Dynamics for the Prediction of Clinical Drug-Drug Interactions from <i>In Vitro</i> Data.
- Published in:
- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0070330
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- Publication type:
- Article
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1371/journal.pcbi.1002860
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- Publication type:
- Article
Software support for SBGN maps: SBGN-ML and LibSBGN.
- Published in:
- Bioinformatics, 2012, v. 28, n. 15, p. 2016, doi. 10.1093/bioinformatics/bts270
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- Publication type:
- Article
Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-132
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- Publication type:
- Article
CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 460, doi. 10.1186/1471-2164-13-460
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- Publication type:
- Article
Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. 1, p. 117, doi. 10.1186/1752-0509-6-117
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- Publication type:
- Article
A framework for mapping, visualisation and automatic model creation of signal-transduction networks.
- Published in:
- Molecular Systems Biology, 2012, v. 8, n. 1, p. 578, doi. 10.1038/msb.2012.12
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- Publication type:
- Article
BioPAX support in CellDesigner.
- Published in:
- Bioinformatics, 2011, v. 27, n. 24, p. 3437, doi. 10.1093/bioinformatics/btr586
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- Publication type:
- Article
Software for systems biology: from tools to integrated platforms.
- Published in:
- 2011
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- Publication type:
- journal article
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.
- Published in:
- Bioinformatics, 2011, v. 27, n. 17, p. 2414, doi. 10.1093/bioinformatics/btr414
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- Publication type:
- Article
Social engineering for virtual 'big science' in systems biology.
- Published in:
- 2011
- By:
- Publication type:
- Opinion
Large-Scale Analysis of Network Bistability for Human Cancers.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000851
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- Publication type:
- Article