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Beta-lactamase dependent and independent evolutionary paths to high-level ampicillin resistance.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-49621-2
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- Article
Systematic identification of gene-altering programmed inversions across the bacterial domain.
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- Nucleic Acids Research, 2023, v. 51, n. 2, p. 553, doi. 10.1093/nar/gkac1166
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- Article
Multistep diversification in spatiotemporal bacterial-phage coevolution.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35351-w
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- Article
Host-parasite coevolution promotes innovation through deformations in fitness landscapes.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.76162
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- Article
Waning of SARS-CoV-2 booster viral-load reduction effectiveness.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28936-y
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- Article
Rapid methicillin resistance diversification in Staphylococcus epidermidis colonizing human neonates.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26392-8
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- Article
Ubiquitous selection for mecA in community-associated MRSA across diverse chemical environments.
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- Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19825-3
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- Article
Escape mutations circumvent a tradeoff between resistance to a beta-lactam and resistance to a beta-lactamase inhibitor.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15666-2
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- Article
Nonoptimal Gene Expression Creates Latent Potential for Antibiotic Resistance.
- Published in:
- Molecular Biology & Evolution, 2018, v. 35, n. 11, p. 2669, doi. 10.1093/molbev/msy163
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- Article
Global and local selection acting on the pathogen Stenotrophomonas maltophilia in the human lung.
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- Nature Communications, 2017, v. 8, n. 1, p. 14078, doi. 10.1038/ncomms14078
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- Article
High-order species interactions shape ecosystem diversity.
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- Nature Communications, 2016, v. 7, n. 8, p. 12285, doi. 10.1038/ncomms12285
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- Article
A Hybrid Drug Limits Resistance by Evading the Action of the Multiple Antibiotic Resistance Pathway.
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- Molecular Biology & Evolution, 2016, v. 33, n. 2, p. 492, doi. 10.1093/molbev/msv243
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- Article
Pervasive selection for and against antibiotic resistance in inhomogeneous multistress environments.
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- Nature Communications, 2016, v. 7, n. 1, p. 10333, doi. 10.1038/ncomms10333
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- Article
Delayed commitment to evolutionary fate in antibiotic resistance fitness landscapes.
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- Nature Communications, 2015, v. 6, n. 6, p. 7385, doi. 10.1038/ncomms8385
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- Article
Counteraction of antibiotic production and degradation stabilizes microbial communities.
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- Nature, 2015, v. 521, n. 7553, p. 516, doi. 10.1038/nature14485
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- Article
Counteraction of antibiotic production and degradation stabilizes microbial communities.
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- Nature, 2015, v. 521, n. 7553, p. 516, doi. 10.1038/nature14485
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- Article
Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes.
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- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0128036
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- Article
Polyploidy can drive rapid adaptation in yeast.
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- Nature, 2015, v. 519, n. 7543, p. 349, doi. 10.1038/nature14187
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- Article
Opposing effects of target overexpression reveal drug mechanisms.
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- Nature Communications, 2014, v. 5, n. 7, p. 4296, doi. 10.1038/ncomms5296
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- Article
Genetic variation of a bacterial pathogen within individuals with cystic fibrosis provides a record of selective pressures.
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- Nature Genetics, 2014, v. 46, n. 1, p. 82, doi. 10.1038/ng.2848
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- Article
Optimization and control in bacterial Lag phase.
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- BMC Biology, 2013, v. 11, n. 1, p. 1, doi. 10.1186/1741-7007-11-120
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- Article
Understanding, predicting and manipulating the genotypic evolution of antibiotic resistance.
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- Nature Reviews Genetics, 2013, v. 14, n. 4, p. 243, doi. 10.1038/nrg3351
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- Article
Building a morbidostat: an automated continuous-culture device for studying bacterial drug resistance under dynamically sustained drug inhibition.
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- Nature Protocols, 2013, v. 8, n. 3, p. 555, doi. 10.1038/nprot.nprot.2013.021
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- Article
Targeting Pan-Resistant Bacteria With Antibodies to a Broadly Conserved Surface Polysaccharide Expressed During Infection.
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- Journal of Infectious Diseases, 2012, v. 205, n. 11, p. 1709, doi. 10.1093/infdis/jis254
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- Article
What counters antibiotic resistance in nature?
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- 2012
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- Publication type:
- Opinion
Evolutionary paths to antibiotic resistance under dynamically sustained drug selection.
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- Nature Genetics, 2012, v. 44, n. 1, p. 101, doi. 10.1038/ng.1034
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- Article
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes.
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- Nature Genetics, 2011, v. 43, n. 12, p. 1275, doi. 10.1038/ng.997
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- Article
Tackling antibiotic resistance.
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- Nature Reviews Microbiology, 2011, v. 9, n. 12, p. 894, doi. 10.1038/nrmicro2693
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- Article
Structure and Evolution of Streptomyces Interaction Networks in Soil and In Silico.
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- PLoS Biology, 2011, v. 9, n. 10, p. 1, doi. 10.1371/journal.pbio.1001184
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- Article
Dynamic Phenotypic Clustering in Noisy Ecosystems.
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- PLoS Computational Biology, 2011, v. 7, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002017
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- Article
A Differential Drug Screen for Compounds That Select Against Antibiotic Resistance.
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- PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0015179
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- Article
Optimal Drug Synergy in Antimicrobial Treatments.
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- PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000796
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- Article
Chemical decay of an antibiotic inverts selection for resistance.
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- 2010
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- Erratum
Need-Based Up-Regulation of Protein Levels in Response to Deletion of Their Duplicate Genes.
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- PLoS Biology, 2010, v. 8, n. 3, p. 1, doi. 10.1371/journal.pbio.1000347
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- Article
Chemical decay of an antibiotic inverts selection for resistance.
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- Nature Chemical Biology, 2010, v. 6, n. 2, p. 105, doi. 10.1038/nchembio.289
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- Article
Drug interactions and the evolution of antibiotic resistance.
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- Nature Reviews Microbiology, 2009, v. 7, n. 6, p. 460, doi. 10.1038/nrmicro2133
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- Article
Exposing the fitness contribution of duplicated genes.
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- Nature Genetics, 2008, v. 40, n. 5, p. 676, doi. 10.1038/ng.123
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- Article
Nongenetic Individuality in the HostPhage Interaction.
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- PLoS Biology, 2008, v. 6, n. 5, p. e120, doi. 10.1371/journal.pbio.0060120
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- Article
Networks from drug–drug surfaces.
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- Molecular Systems Biology, 2007, v. 3, n. 1, p. 85, doi. 10.1038/msb4100133
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- Article
Antibiotic interactions that select against resistance.
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- 2007
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- Publication type:
- Letter
Functional classification of drugs by properties of their pairwise interactions.
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- Nature Genetics, 2006, v. 38, n. 4, p. 489, doi. 10.1038/ng1755
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- Article
Bacterial Persistence: A Model of Survival in Changing Environments.
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- Genetics, 2005, v. 169, n. 4, p. 1807, doi. 10.1534/genetics.104.035352
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- Article
Modular epistasis in yeast metabolism.
- Published in:
- Nature Genetics, 2005, v. 37, n. 1, p. 77, doi. 10.1038/ng1489
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- Article
Environmental stresses can alleviate the average deleterious effect of mutations.
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- Journal of Biology, 2003, v. 2, p. 14, doi. 10.1186/1475-4924-2-14
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- Article