Works matching AU Kinoshita, Kengo

Results: 137

NCMine: Core-peripheral based functional module detection using near-clique mining.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3454, doi. 10.1093/bioinformatics/btw488

By:

Shu Tadaka;
Kengo Kinoshita

Publication type:

Article

Ligand-binding site prediction of proteins based on known fragment–fragment interactions.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1493, doi. 10.1093/bioinformatics/btq232

By:

Kasahara, Kota;
Kinoshita, Kengo;
Takagi, Toshihisa

Publication type:

Article

Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis.

Published in:

Bioinformatics, 2009, v. 25, n. 20, p. 2677, doi. 10.1093/bioinformatics/btp442

By:

Kinoshita, Kengo;
Obayashi, Takeshi

Publication type:

Article

Prediction of disordered regions in proteins based on the meta approach.

Published in:

Bioinformatics, 2008, v. 24, n. 11, p. 1344, doi. 10.1093/bioinformatics/btn195

By:

Takashi Ishida;
Kengo Kinoshita

Publication type:

Article

GWAS Meta-analysis of Kidney Function Traits in Japanese Populations.

Published in:

Journal of Epidemiology, 2024, v. 34, n. 11, p. 526, doi. 10.2188/jea.JE20230281

By:

Asahi Hishida;
Masahiro Nakatochi;
Yoichi Sutoh;
Shiori Nakano;
Yukihide Momozawa;
Akira Narita;
Kozo Tanno;
Atsushi Shimizu;
Atsushi Hozawa;
Kengo Kinoshita;
Taiki Yamaji;
Atsushi Goto;
Mitsuhiko Noda;
Norie Sawada;
Hiroaki Ikezaki;
Mako Nagayoshi;
Megumi Hara;
Sadao Suzuki;
Teruhide Koyama;
Chihaya Koriyama

Publication type:

Article

Public Access to Summary Statistics for Genome-wide Association Studies of Body Mass Index, Weight, and Height Among Healthy Japanese Individuals: The Japanese Consortium of Genetic Epidemiology Studies.

Published in:

Journal of Epidemiology, 2022, v. 32, n. 2, p. 115, doi. 10.2188/jea.JE20210459

By:

Atsushi Goto;
Shiori Suzuki;
Ryoko Katagiri;
Taiki Yamaji;
Norie Sawada;
Masahiro Nakatochi;
Kenji Wakai;
Atsushi Hozawa;
Kengo Kinoshita;
Kozo Tanno;
Atsushi Shimizu;
Hidemi Ito;
Keitaro Matsuo;
Motoki Iwasaki

Publication type:

Article

Comparison of Kit-Based Metabolomics with Other Methodologies in a Large Cohort, towards Establishing Reference Values.

Published in:

Metabolites (2218-1989), 2021, v. 11, n. 10, p. 652, doi. 10.3390/metabo11100652

By:

Saigusa, Daisuke;
Hishinuma, Eiji;
Matsukawa, Naomi;
Takahashi, Masatomo;
Inoue, Jin;
Tadaka, Shu;
Motoike, Ikuko N.;
Hozawa, Atsushi;
Izumi, Yoshihiro;
Bamba, Takeshi;
Kinoshita, Kengo;
Ekroos, Kim;
Koshiba, Seizo;
Yamamoto, Masayuki

Publication type:

Article

Prevalence, Associated Factors, and Inter-Eye Differences of Refractive Errors in a Population-Based Japanese Cohort: The Tohoku Medical Megabank Eye Study.

Published in:

Ophthalmic Epidemiology, 2024, v. 31, n. 1, p. 46, doi. 10.1080/09286586.2023.2203226

By:

Miki, Atsuya;
Fuse, Nobuo;
Fujimoto, Satoko;
Taira, Makiko;
Saito, Tomo;
Okazaki, Tomoyuki;
Shiraki, Akihiko;
Sato, Shigeru;
Kawasaki, Ryo;
Nakamura, Tomohiro;
Kinoshita, Kengo;
Nishida, Kohji;
Yamamoto, Masayuki

Publication type:

Article

Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks.

Published in:

BMC Genomics, 2011, v. 12, n. Suppl 3, p. 1, doi. 10.1186/1471-2164-12-S3-S19

By:

Patil, Ashwini;
Nakai, Kenta;
Kinoshita, Kengo

Publication type:

Article

Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-152

By:

Chiba, Hirokazu;
Yamashita, Riu;
Kinoshita, Kengo;
Nakai, Kenta

Publication type:

Article

P-cats: prediction of catalytic residues in proteins from their tertiary structures.

Published in:

Bioinformatics, 2005, v. 21, n. 17, p. 3570, doi. 10.1093/bioinformatics/bti561

By:

Kengo Kinoshita;
Motonori Ota

Publication type:

Article

PreDs: a server for predicting dsDNA-binding site on protein molecular surfaces.

Published in:

Bioinformatics, 2005, v. 21, n. 8, p. 1721, doi. 10.1093/bioinformatics/bti232

By:

Yuko Tsuchiya;
Kengo Kinoshita;
Haruki Nakamura

Publication type:

Article

eF-site and PDBjViewer: database and viewer for protein functional sites.

Published in:

Bioinformatics, 2004, v. 20, n. 8, p. 1329, doi. 10.1093/bioinformatics/bth073

By:

Kengo Kinoshita;
Haruki Nakamura

Publication type:

Article

Pathological variants in genes associated with disorders of sex development and central causes of hypogonadism in a whole-genome reference panel of 8380 Japanese individuals.

Published in:

Human Genome Variation, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41439-022-00213-w

By:

Shiga, Naomi;
Yamaguchi-Kabata, Yumi;
Igeta, Saori;
Yasuda, Jun;
Tadaka, Shu;
Minato, Takamichi;
Watanabe, Zen;
Kanno, Junko;
Tamiya, Gen;
Fuse, Nobuo;
Kinoshita, Kengo;
Kure, Shigeo;
Kondo, Akiko;
Tachibana, Masahito;
Yamamoto, Masayuki;
Yaegashi, Nobuo;
Sugawara, Junichi

Publication type:

Article

Estimation of the carrier frequencies and proportions of potential patients by detecting causative gene variants associated with autosomal recessive bone dysplasia using a whole-genome reference panel of Japanese individuals.

Published in:

Human Genome Variation, 2021, v. 8, n. 1, p. 1, doi. 10.1038/s41439-020-00133-7

By:

Nagaoka, Shinichi;
Yamaguchi-Kabata, Yumi;
Shiga, Naomi;
Tachibana, Masahito;
Yasuda, Jun;
Tadaka, Shu;
Tamiya, Gen;
Fuse, Nobuo;
Kinoshita, Kengo;
Kure, Shigeo;
Murotsuki, Jun;
Yamamoto, Masayuki;
Yaegashi, Nobuo;
Sugawara, Junichi

Publication type:

Article

Single-cell RNA-seq public data reveal the gene regulatory network landscape of respiratory epithelial and peripheral immune cells in COVID-19 patients.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1194614

By:

Lin Zhang;
Hafumi Nishi;
Kengo Kinoshita

Publication type:

Article

Wide-Targeted Metabolome Analysis Identifies Potential Biomarkers for Prognosis Prediction of Epithelial Ovarian Cancer.

Published in:

Toxins, 2021, v. 13, n. 7, p. 461, doi. 10.3390/toxins13070461

By:

Hishinuma, Eiji;
Shimada, Muneaki;
Matsukawa, Naomi;
Saigusa, Daisuke;
Li, Bin;
Kudo, Kei;
Tsuji, Keita;
Shigeta, Shogo;
Tokunaga, Hideki;
Kumada, Kazuki;
Komine, Keigo;
Shirota, Hidekazu;
Aoki, Yuichi;
Motoike, Ikuko N.;
Yasuda, Jun;
Kinoshita, Kengo;
Yamamoto, Masayuki;
Koshiba, Seizo;
Yaegashi, Nobuo

Publication type:

Article

A novel biclustering approach with iterative optimization to analyze gene expression data.

Published in:

Advances & Applications in Bioinformatics & Chemistry, 2012, v. 5, p. 23, doi. 10.2147/AABC.S32622

By:

Sutheeworapong, Sawannee;
Ota, Motonori;
Ohta, Hiroyuki;
Kinoshita, Kengo

Publication type:

Article

Classification of heterodimer interfaces using docking models and construction of scoring functions for the complex structure prediction.

Published in:

Advances & Applications in Bioinformatics & Chemistry, 2009, v. 2, p. 79

By:

Tsuchiya, Yuko;
Kanamori, Eiji;
Nakamura, Haruki;
Kinoshita, Kengo

Publication type:

Article

Discrimination between biological interfaces and crystal-packing contacts.

Published in:

Advances & Applications in Bioinformatics & Chemistry, 2008, v. 1, p. 99

By:

Tsuchiya, Yuko;
Nakamura, Haruki;
Kinoshita, Kengo

Publication type:

Article

Comparison of Gene Coexpression Profiles and Construction of Conserved Gene Networks to Find Functional Modules.

Published in:

PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0132039

By:

Okamura, Yasunobu;
Obayashi, Takeshi;
Kinoshita, Kengo

Publication type:

Article

Ion Concentration-Dependent Ion Conduction Mechanism of a Voltage-Sensitive Potassium Channel.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056342

By:

Kasahara, Kota;
Shirota, Matsuyuki;
Kinoshita, Kengo

Publication type:

Article

Erratum: ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index.

Published in:

2018

By:

Obayashi, Takeshi;
Aoki, Yuichi;
Tadaka, Shu;
Kagaya, Yuki;
Kinoshita, Kengo

Publication type:

Correction Notice

ATTED-II in 2018: A Plant Coexpression Database Based on Investigation of the Statistical Property of the Mutual Rank Index.

Published in:

Plant & Cell Physiology, 2018, v. 59, n. 1, p. 1, doi. 10.1093/pcp/pcx191

By:

Obayashi, Takeshi;
Aoki, Yuichi;
Tadaka, Shu;
Kagaya, Yuki;
Kinoshita, Kengo

Publication type:

Article

ATTED-II in 2016: A Plant Coexpression Database Towards Lineage-Specific Coexpression.

Published in:

Plant & Cell Physiology, 2016, v. 57, n. 1, p. 1, doi. 10.1093/pcp/pcv165

By:

Yuichi Aoki;
Yasunobu Okamura;
Shu Tadaka;
Kengo Kinoshita;
Takeshi Obayashi

Publication type:

Article

ALCOdb: Gene Coexpression Database for Microalgae.

Published in:

Plant & Cell Physiology, 2016, v. 57, n. 1, p. 1, doi. 10.1093/pcp/pcv190

By:

Yuichi Aoki;
Yasunobu Okamura;
Hiroyuki Ohta;
Kengo Kinoshita;
Takeshi Obayashi

Publication type:

Article

ATTED-II in 2014: Evaluation of Gene Coexpression in Agriculturally Important Plants.

Published in:

Plant & Cell Physiology, 2014, v. 55, n. 1, p. e6, doi. 10.1093/pcp/pct178

By:

Obayashi, Takeshi;
Okamura, Yasunobu;
Ito, Satoshi;
Tadaka, Shu;
Aoki, Yuichi;
Shirota, Matsuyuki;
Kinoshita, Kengo

Publication type:

Article

ATTED-II Updates: Condition-Specific Gene Coexpression to Extend Coexpression Analyses and Applications to a Broad Range of Flowering Plants.

Published in:

Plant & Cell Physiology, 2011, v. 52, n. 2, p. 213, doi. 10.1093/pcp/pcq203

By:

Obayashi, Takeshi;
Nishida, Kozo;
Kasahara, Kota;
Kinoshita, Kengo

Publication type:

Article

Deficiency of CHAMP1, a gene related to intellectual disability, causes impaired neuronal development and a mild behavioural phenotype.

Published in:

Brain Communications, 2022, v. 4, n. 5, p. 1, doi. 10.1093/braincomms/fcac220

By:

Masayoshi Nagai;
Kenji Iemura;
Takako Kikkawa;
Sharmin Naher;
Satoko Hattori;
Hideo Hagihara;
Koh-ichi Nagata;
Hayato Anzawa;
Risa Kugisaki;
Hideki Wanibuchi;
Takaya Abe;
Kenichi Inoue;
Kengo Kinoshita;
Tsuyoshi Miyakawa;
Noriko Osumi;
Kozo Tanaka

Publication type:

Article

Omics research project on prospective cohort studies from the Tohoku Medical Megabank Project.

Published in:

Genes to Cells, 2018, v. 23, n. 6, p. 406, doi. 10.1111/gtc.12588

By:

Koshiba, Seizo;
Motoike, Ikuko;
Saigusa, Daisuke;
Inoue, Jin;
Shirota, Matsuyuki;
Katoh, Yasutake;
Katsuoka, Fumiki;
Danjoh, Inaho;
Hozawa, Atsushi;
Kuriyama, Shinichi;
Minegishi, Naoko;
Nagasaki, Masao;
Takai‐Igarashi, Takako;
Ogishima, Soichi;
Fuse, Nobuo;
Kure, Shigeo;
Tamiya, Gen;
Tanabe, Osamu;
Yasuda, Jun;
Kinoshita, Kengo

Publication type:

Article

Whole genome sequence‐based association of cognitive decline and retinal thickness in the Japanese population.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, n. S9, p. 1, doi. 10.1002/alz.094141

By:

Taira, Makiko;
Fuse, Nobuo;
Saykin, Andrew J.;
Nagami, Fuji;
Kinoshita, Kengo;
Yamamoto, Masayuki

Publication type:

Article

Whole genome sequence‐based association of cognitive decline and retinal thickness in the Japanese population.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, p. 1, doi. 10.1002/alz.093405

By:

Taira, Makiko;
Fuse, Nobuo;
Saykin, Andrew J.;
Nagami, Fuji;
Kinoshita, Kengo;
Yamamoto, Masayuki

Publication type:

Article

Combining MRI and genetic data in the Tohoku Medical Megabank Organization cohort study for innovative Alzheimer's disease research: Epidemiology / Prevalence, incidence, and outcomes of MCI and dementia.

Published in:

Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2020, v. 16, n. 11, p. 1, doi. 10.1002/alz.045688

By:

Taira, Makiko;
Fuse, Nobuo;
Mugikura, Shunji;
Kinoshita, Kengo;
Yamamoto, Masayuki

Publication type:

Article

High levels of chromosomal instability facilitate the tumor growth and sphere formation.

Published in:

Cancer Science, 2022, v. 113, n. 8, p. 2727, doi. 10.1111/cas.15457

By:

Iemura, Kenji;
Anzawa, Hayato;
Funayama, Ryo;
Iwakami, Runa;
Nakayama, Keiko;
Kinoshita, Kengo;
Tanaka, Kozo

Publication type:

Article

Impacts of NRF2 activation in non–small‐cell lung cancer cell lines on extracellular metabolites.

Published in:

Cancer Science, 2020, v. 111, n. 2, p. 667, doi. 10.1111/cas.14278

By:

Saigusa, Daisuke;
Motoike, Ikuko N.;
Saito, Sakae;
Zorzi, Michael;
Aoki, Yuichi;
Kitamura, Hiroshi;
Suzuki, Mikiko;
Katsuoka, Fumiki;
Ishii, Hirofumi;
Kinoshita, Kengo;
Motohashi, Hozumi;
Yamamoto, Masayuki

Publication type:

Article

Guanine nucleotide-binding protein 1 is one of the key molecules contributing to cancer cell radioresistance.

Published in:

Cancer Science, 2014, v. 105, n. 10, p. 1351, doi. 10.1111/cas.12489

By:

Fukumoto, Motoi;
Amanuma, Tatsuya;
Kuwahara, Yoshikazu;
Shimura, Tsutomu;
Suzuki, Masatoshi;
Mori, Shiro;
Kumamoto, Hiroyuki;
Saito, Yohei;
Ohkubo, Yasuhito;
Duan, Zhenfeng;
Sano, Kenji;
Oguchi, Tomohiro;
Kainuma, Kazuyuki;
Usami, Shinichi;
Kinoshita, Kengo;
Lee, Inchul;
Fukumoto, Manabu

Publication type:

Article

Molecular pathological demonstration of an unusual angiosarcoma‐like dedifferentiation pattern in hepatocellular carcinoma.

Published in:

Pathology International, 2024, v. 74, n. 3, p. 157, doi. 10.1111/pin.13412

By:

Murakami, Keigo;
Itoh, Taito;
Okamura, Yasunobu;
Kinoshita, Kengo;
Ota, Hideki;
Unno, Michiaki;
Kamei, Takashi;
Furukawa, Toru

Publication type:

Article

Structural basis for the membrane association of ankyrinG via palmitoylation.

Published in:

Scientific Reports, 2016, p. 23981, doi. 10.1038/srep23981

By:

Fujiwara, Yuichiro;
Kondo, Hiroko X.;
Shirota, Matsuyuki;
Kobayashi, Megumi;
Takeshita, Kohei;
Nakagawa, Atsushi;
Okamura, Yasushi;
Kinoshita, Kengo

Publication type:

Article

IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167524

By:

Kasahara, Kota;
Kinoshita, Kengo

Publication type:

Article

Dietary habits and plasma lipid concentrations in a general Japanese population.

Published in:

Metabolomics, 2024, v. 20, n. 2, p. 1, doi. 10.1007/s11306-024-02087-1

By:

Sato, Mitsuharu;
Hishinuma, Eiji;
Matsukawa, Naomi;
Shima, Yoshiko;
Saigusa, Daisuke;
Motoike, Ikuko N.;
Kogure, Mana;
Nakaya, Naoki;
Hozawa, Atsushi;
Kuriyama, Shinichi;
Yamamoto, Masayuki;
Koshiba, Seizo;
Kinoshita, Kengo

Publication type:

Article

Whole blood transcriptome analysis for age- and gender-specific gene expression profiling in Japanese individuals.

Published in:

Journal of Biochemistry, 2024, v. 175, n. 6, p. 611, doi. 10.1093/jb/mvae008

By:

Aoki, Yu-ichi;
Taguchi, Keiko;
Anzawa, Hayato;
Kawashima, Junko;
Ishida, Noriko;
Otsuki, Akihito;
Hasegawa, Atsushi;
Baird, Liam;
Suzuki, Takafumi;
Motoike, Ikuko N;
Ohneda, Kinuko;
Kumada, Kazuki;
Katsuoka, Fumiki;
Kinoshita, Kengo;
Yamamoto, Masayuki

Publication type:

Article

Ring and zipper formation is the key to understanding the structural variety in all-β proteins

Published in:

FEBS Letters, 2003, v. 533, p. 9, doi. 10.1016/S0014-5793(02)03729-8

By:

Koike, Ryotaro;
Kinoshita, Kengo;
Kidera, Akinori

Publication type:

Article

Docking of protein molecular surfaces with evolutionary trace analysis.

Published in:

Proteins, 2007, v. 69, n. 4, p. 832, doi. 10.1002/prot.21737

By:

Kanamori, Eiji;
Murakami, Yoichi;
Tsuchiya, Yuko;
Standley, Daron M.;
Nakamura, Haruki;
Kinoshita, Kengo

Publication type:

Article

Probabilistic alignment detects remote homology in a pair of protein sequences without homologous sequence information.

Published in:

Proteins, 2007, v. 66, n. 3, p. 655, doi. 10.1002/prot.21240

By:

Koike, Ryotaro;
Kinoshita, Kengo;
Kidera, Akinori

Publication type:

Article

Probabilistic description of protein alignments for sequences and structures.

Published in:

Proteins, 2004, v. 56, n. 1, p. 157, doi. 10.1002/prot.20067

By:

Koike, Ryotaro;
Kinoshita, Kengo;
Kidera, Akinori

Publication type:

Article

Structure-based prediction of DNA-binding sites on proteins Using the empirical preference of electrostatic potential and the shape of molecular surfaces.

Published in:

Proteins, 2004, v. 55, n. 4, p. 885, doi. 10.1002/prot.20111

By:

Tsuchiya, Yuko;
Kinoshita, Kengo;
Nakamura, Haruki

Publication type:

Article

新蛋白質の時代：ゲノムと表現型の架け橋としての蛋白質.

Published in:

Seibutsu Butsuri, 2013, v. 53, n. 4, p. 181, doi. 10.2142/biophys.53.181

By:

Kinoshita Kengo

Publication type:

Article

Biophysics Laboratories that Experienced the Higashinihon Earthquake.

Published in:

Seibutsu Butsuri, 2011, v. 51, n. 4, p. 192, doi. 10.2142/biophys.51.192

By:

Takahashi, Satoshi;
Ishijima, Akihiko;
Ohki, Kazuo;
Kinoshita, Kengo;
Suzuki, Makoto;
Niimura, Nobuo;
Honda, Shinya;
Wakatsuki, Soichi

Publication type:

Article

Whole exome sequencing and establishment of an organoid culture of the carcinoma showing thymus-like differentiation (CASTLE) of the parotid gland.

Published in:

2021

By:

Ishikawa, Tomohiko;
Ogawa, Takenori;
Nakanome, Ayako;
Yamauchi, Yasunari;
Usubuchi, Hajime;
Shiihara, Masahiro;
Yoshida, Takuya;
Okamura, Yasunobu;
Kinoshita, Kengo;
Katori, Yukio;
Furukawa, Toru

Publication type:

journal article

Genome-wide identification of inter-individually variable DNA methylation sites improves the efficacy of epigenetic association studies.

Published in:

NPJ Genomic Medicine, 2017, v. 2, n. 1, p. N.PAG, doi. 10.1038/s41525-017-0016-5

By:

Hachiya, Tsuyoshi;
Furukawa, Ryohei;
Shiwa, Yuh;
Ohmomo, Hideki;
Ono, Kanako;
Katsuoka, Fumiki;
Nagasaki, Masao;
Yasuda, Jun;
Fuse, Nobuo;
Kinoshita, Kengo;
Yamamoto, Masayuki;
Tanno, Kozo;
Satoh, Mamoru;
Endo, Ryujin;
Sasaki, Makoto;
Sakata, Kiyomi;
Kobayashi, Seiichiro;
Ogasawara, Kuniaki;
Hitomi, Jiro;
Sobue, Kenji

Publication type:

Article