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ECOD: identification of distant homology among multidomain and transmembrane domain proteins.
- Published in:
- BMC Molecular & Cell Biology, 2019, p. 1, doi. 10.1186/s12860-019-0204-5
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- Article
GRB2 is a BECN1 interacting protein that regulates autophagy.
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- Cell Death & Disease, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41419-023-06387-7
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- Article
Pyrimidine Salvage Enzymes Are Essential for De Novo Biosynthesis of Deoxypyrimidine Nucleotides in Trypanosoma brucei.
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- PLoS Pathogens, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.ppat.1006010
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- Article
ECOD domain classification of 48 whole proteomes from AlphaFold Structure Database using DPAM2.
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- PLoS Computational Biology, 2024, v. 20, n. 2, p. 1, doi. 10.1371/journal.pcbi.1011586
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- Article
Genomics Reveals the Origins of Historical Specimens.
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- Molecular Biology & Evolution, 2021, v. 38, n. 5, p. 2166, doi. 10.1093/molbev/msab013
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- Article
Effectors of animal and plant pathogens use a common domain to bind host phosphoinositides.
- Published in:
- Nature Communications, 2013, v. 4, n. 12, p. 2973, doi. 10.1038/ncomms3973
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- Article
Attitudes Toward Corporate Art Collecting: A Survey of Design Professionals.
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- Journal of Interior Design, 1989, v. 15, n. 2, p. 15, doi. 10.1111/j.1939-1668.1989.tb00139.x
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- Article
Regulating Death and Disease: Exploring the Roles of Metacaspases in Plants and Fungi.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 1, p. 312, doi. 10.3390/ijms24010312
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- Article
Regulation of Beclin 1-Mediated Autophagy by Oncogenic Tyrosine Kinases.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 23, p. 9210, doi. 10.3390/ijms21239210
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- Article
Seq2Ref: a web server to facilitate functional interpretation.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-30
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- Publication type:
- Article
Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria.
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- PLoS Pathogens, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.ppat.1005128
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- Publication type:
- Article
Structural Basis for Rab1 De-AMPylation by the <i>Legionella pneumophila</i> Effector SidD
- Published in:
- PLoS Pathogens, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.ppat.1003382
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- Publication type:
- Article
Evolution of a novel lysine decarboxylase in siderophore biosynthesis.
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- Molecular Microbiology, 2012, v. 86, n. 2, p. 485, doi. 10.1111/j.1365-2958.2012.08208.x
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- Publication type:
- Article
Analysis of CASP8 targets, predictions and assessment methods.
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- Database: The Journal of Biological Databases & Curation, 2009, v. 2009, p. 1, doi. 10.1093/database/bap003
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- Publication type:
- Article
Functional and evolutionary analysis of viral proteins containing a Rossmann‐like fold.
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 8, p. 1450, doi. 10.1002/pro.3438
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- Article
Classification of proteins with shared motifs and internal repeats in the ECOD database.
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- Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 7, p. 1188, doi. 10.1002/pro.2893
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- Article
ChSeq: A database of chameleon sequences.
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- Protein Science: A Publication of the Protein Society, 2015, v. 24, n. 7, p. 1075, doi. 10.1002/pro.2689
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- Publication type:
- Article
Conserved evolutionary units in the heme-copper oxidase superfamily revealed by novel homologous protein families.
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- Protein Science: A Publication of the Protein Society, 2014, v. 23, n. 9, p. 1220, doi. 10.1002/pro.2503
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- Publication type:
- Article
Optimization of linear disorder predictors yields tight association between crystallographic disorder and hydrophobicity.
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- Protein Science: A Publication of the Protein Society, 2007, v. 16, n. 10, p. 2140, doi. 10.1110/ps.072980107
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- Article
Longin-like folds identified in CHiPS and DUF254 proteins: Vesicle trafficking complexes conserved in eukaryotic evolution.
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- Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 11, p. 2669, doi. 10.1110/ps.062419006
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- Publication type:
- Article
Site-2 protease regulated intramembrane proteolysis: Sequence homologs suggest an ancient signaling cascade.
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- Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 1, p. 84, doi. 10.1110/ps.051766506
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- Article
EDD, a novel phosphotransferase domain common to mannose transporter EIIA, dihydroxyacetone kinase, and DegV.
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- Protein Science: A Publication of the Protein Society, 2005, v. 14, n. 2, p. 360, doi. 10.1110/ps.041114805
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- Article
Erratum: BAP1 loss defines a new class of renal cell carcinoma.
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- 2012
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- Publication type:
- Erratum
BAP1 loss defines a new class of renal cell carcinoma.
- Published in:
- Nature Genetics, 2012, v. 44, n. 7, p. 751, doi. 10.1038/ng.2323
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- Article
Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.20198
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- Article
Structure of protein O-mannose kinase reveals a unique active site architecture.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.22238
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- Publication type:
- Article
Bile salt receptor complex activates a pathogenic type III secretion system.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.15718
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- Publication type:
- Article
Large scale determination of previously unsolved protein structures using evolutionary information.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.09248
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- Publication type:
- Article
SCOPmap: Automated assignment of protein structures to evolutionary superfamilies.
- Published in:
- BMC Bioinformatics, 2004, v. 5, p. 197, doi. 10.1186/1471-2105-5-197
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- Publication type:
- Article
ECOD: An Evolutionary Classification of Protein Domains.
- Published in:
- PLoS Computational Biology, 2014, v. 10, n. 12, p. 1, doi. 10.1371/journal.pcbi.1003926
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- Publication type:
- Article
<i>Vibrio</i> Type III Effector VPA1380 Is Related to the Cysteine Protease Domain of Large Bacterial Toxins.
- Published in:
- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0104387
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- Publication type:
- Article
Predictive Sequence Analysis of the Candidatus Liberibacter asiaticus Proteome.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0041071
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- Article
Fido, a Novel AMPylation Domain Common to Fic, Doc, and AvrB.
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- PLoS ONE, 2009, v. 4, n. 6, p. 1, doi. 10.1371/journal.pone.0005818
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- Article
A Database of Domain Definitions for Proteins with Complex Interdomain Geometry.
- Published in:
- PLoS ONE, 2009, v. 4, n. 4, p. 1, doi. 10.1371/journal.pone.0005084
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- Publication type:
- Article
The human Ago2 MC region does not contain an eIF4E-like mRNA cap binding motif.
- Published in:
- Biology Direct, 2009, v. 4, p. 1, doi. 10.1186/1745-6150-4-2
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- Article
Identification of a candidate therapeutic autophagy-inducing peptide.
- Published in:
- Nature, 2013, v. 494, n. 7436, p. 201, doi. 10.1038/nature11866
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- Publication type:
- Article
Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14).
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- Proteins, 2021, v. 89, n. 12, p. 1700, doi. 10.1002/prot.26225
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- Article
Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14).
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- Proteins, 2021, v. 89, n. 12, p. 1618, doi. 10.1002/prot.26202
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- Publication type:
- Article
Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14).
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- Proteins, 2021, v. 89, n. 12, p. 1673, doi. 10.1002/prot.26172
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- Article
β‐Strand‐mediated interactions of protein domains.
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- Proteins, 2020, v. 88, n. 11, p. 1513, doi. 10.1002/prot.25970
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- Article
CASP13 target classification into tertiary structure prediction categories.
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- Proteins, 2019, v. 87, n. 12, p. 1021, doi. 10.1002/prot.25775
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- Article
Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi‐automated metrics.
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- Proteins, 2018, v. 86, n. 1, p. 16, doi. 10.1002/prot.25403
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- Publication type:
- Article
Assessment of CASP11 contact-assisted predictions.
- Published in:
- Proteins, 2016, v. 84, p. 164, doi. 10.1002/prot.25020
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- Article
Evaluation of free modeling targets in CASP11 and ROLL.
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- Proteins, 2016, v. 84, p. 51, doi. 10.1002/prot.24973
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- Article
CASP 11 target classification.
- Published in:
- Proteins, 2016, v. 84, p. 20, doi. 10.1002/prot.24982
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- Publication type:
- Article
The ABC transporters in Candidatus Liberibacter asiaticus.
- Published in:
- Proteins, 2012, v. 80, n. 11, p. 2614, doi. 10.1002/prot.24147
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- Article
CASP9 target classification.
- Published in:
- Proteins, 2011, v. 79, p. 21, doi. 10.1002/prot.23190
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- Article
CASP9 assessment of free modeling target predictions.
- Published in:
- Proteins, 2011, v. 79, p. 59, doi. 10.1002/prot.23181
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- Publication type:
- Article
Structure prediction for CASP8 with all-atom refinement using Rosetta.
- Published in:
- Proteins, 2009, v. 77, n. S9, p. 89, doi. 10.1002/prot.22540
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- Publication type:
- Article
Deciphering a novel thioredoxin-like fold family (This article is a US Government work and, as such, is in the public domain in the United States of America.).
- Published in:
- Proteins, 2003, v. 52, n. 3, p. 323, doi. 10.1002/prot.10425
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- Publication type:
- Article