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The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.
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- Nucleic Acids Research, 2021, v. 49, n. D1, p. D575, doi. 10.1093/nar/gkaa746
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- Article
Combining multiple functional annotation tools increases coverage of metabolic annotation.
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- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5221-9
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- Article
Active virus-host interactions at sub-freezing temperatures in Arctic peat soil.
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- Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-021-01154-2
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- Article
Multiple Mutations Associated with Emergent Variants Can Be Detected as Low-Frequency Mutations in Early SARS-CoV-2 Pandemic Clinical Samples.
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- Viruses (1999-4915), 2022, v. 14, n. 12, p. 2775, doi. 10.3390/v14122775
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- Article
SARS-CoV-2 Monitoring in Wastewater Reveals Novel Variants and Biomarkers of Infection.
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- Viruses (1999-4915), 2022, v. 14, n. 9, p. 2032, doi. 10.3390/v14092032
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- Article
The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family.
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- Environmental Microbiology Reports, 2011, v. 3, n. 3, p. 390, doi. 10.1111/j.1758-2229.2010.00239.x
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- Article
Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum.
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- PLoS Pathogens, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.ppat.1003204
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- Article
Higher order asymptotics for negative binomial regression inferences from RNA-sequencing data.
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- Statistical Applications in Genetics & Molecular Biology, 2013, v. 12, n. 1, p. 49, doi. 10.1515/sagmb-2012-0071
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- Article
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates.
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- Bioinformatics, 2019, v. 35, n. 21, p. 4402, doi. 10.1093/bioinformatics/btz258
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- Article
HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi.
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- Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01391-z
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- Article
Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics.
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- Molecular Plant Pathology, 2011, v. 12, n. 6, p. 580, doi. 10.1111/j.1364-3703.2010.00694.x
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- Article
Dynamic Phaeodactylum tricornutum exometabolites shape surrounding bacterial communities.
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- New Phytologist, 2023, v. 239, n. 4, p. 1420, doi. 10.1111/nph.19051
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- Article
Microbial Community Structure and Functional Potential Along a Hypersaline Gradient.
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- Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01492
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- Article
GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences.
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- PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0025279
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- Article
Attachment between heterotrophic bacteria and microalgae influences symbiotic microscale interactions.
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- Environmental Microbiology, 2018, v. 20, n. 12, p. 4385, doi. 10.1111/1462-2920.14357
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- Article
Recombineering and stable integration of the Pseudomonas syringae pv. syringae 61 hrp/hrc cluster into the genome of the soil bacterium Pseudomonas fluorescens Pf0-1.
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- Plant Journal, 2009, v. 60, n. 5, p. 919, doi. 10.1111/j.1365-313X.2009.03998.x
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- Article
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 7, p. 1464, doi. 10.1038/ismej.2013.254
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- Article
Spatio-Temporal Interdependence of Bacteria and Phytoplankton during a Baltic Sea Spring Bloom.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00517
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- Article
MultiPhATE2: code for functional annotation and comparison of phage genomes.
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- G3: Genes | Genomes | Genetics, 2021, v. 11, n. 5, p. 1, doi. 10.1093/g3journal/jkab074
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- Article
Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies.
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- PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0289198
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- Article
Transporter annotations are holding up progress in metabolic modeling.
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- Frontiers in Systems Biology, 2024, p. 1, doi. 10.3389/fsysb.2024.1394084
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- Article
RNA-Seq for Plant Pathogenic Bacteria.
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- Genes, 2011, v. 2, n. 4, p. 689, doi. 10.3390/genes2040689
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An improved, high-quality draft genome sequence of the Germination-Arrest Factorproducing Pseudomonas fluorescens WH6.
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- BMC Genomics, 2010, v. 11, p. 522, doi. 10.1186/1471-2164-11-522
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- Article