Works matching AU Kierzek, Ryszard

Results: 57

Modified RNA triplexes: Thermodynamics, structure and biological potential.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31387-5

By:

Szabat, Marta;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

The Spontaneous Rearrangement of 2,4-Dinitrophenyl Substituent in Ribonucleosides Under Neutral Conditions.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2010, v. 29, n. 9, p. 684, doi. 10.1080/15257770.2010.507233

By:

Olejnik, Anna;
Gdaniec, Zofia;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

Solid-Supported Synthesis of 5'-mRNA CAP-4 from Trypanosomatids.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2007, v. 26, n. 10-12, p. 1329, doi. 10.1080/15257770701533065

By:

Lewdorowicz, Magdalena;
Jemielity, Jacek;
Kierzek, Ryszard;
Shapira, Michal;
Stepinski, Janusz;
Darzynkiewicz, Edward

Publication type:

Article

Synthesis of Leishmania Cap-4 Intermediates, Cap-2 and Cap-3.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2007, v. 26, n. 10-12, p. 1339, doi. 10.1080/15257770701533446

By:

Lewdorowicz, Magdalena;
Stepinski, Janusz;
Kierzek, Ryszard;
Jemielity, Jacek;
Zuberek, Joanna;
Yoffe, Yael;
Shapira, Michal;
Stolarski, Ryszard;
Darzynkiewicz, Edward

Publication type:

Article

The Nonenzymatic Hydrolysis of Oligoribonucleotides VII. Structural Elements Affecting Hydrolysis.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2000, v. 19, n. 5/6, p. 977, doi. 10.1080/15257770008033037

By:

Bibillo, Arkadiusz;
Figlerowicz, Marek;
Ziomek, Krzysztof;
Kierzek, Ryszard

Publication type:

Article

The Chemical Synthesis of Oligoribonucleotides with Selectively Placed 2′- O -Phosphates.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2000, v. 19, n. 5/6, p. 917, doi. 10.1080/15257770008033032

By:

Kierzek, Ryszard;
Steiger, Michelle A.;
Spinelli, Sherry L.;
Turner, Douglas H.;
Phizicky, Eric M.

Publication type:

Article

Atomic resolution structure of a chimeric DNA-RNA Z-type duplex in complex with Ba2+ ions: a case of complicated multi-domain twinning.

Published in:

Acta Crystallographica: Section D, Structural Biology, 2016, v. 72, n. 2, p. 211, doi. 10.1107/S2059798315024365

By:

Gilski, Miroslaw;
Drozdzal, Pawel;
Kierzek, Ryszard;
Jaskolski, Mariusz

Publication type:

Article

Secondary structure prediction for RNA sequences including N6-methyladenosine.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28817-4

By:

Kierzek, Elzbieta;
Zhang, Xiaoju;
Watson, Richard M.;
Kennedy, Scott D.;
Szabat, Marta;
Kierzek, Ryszard;
Mathews, David H.

Publication type:

Article

Secondary Structure of a Conserved Domain in the Intron of Influenza A NS1 mRNA.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0070615

By:

Priore, Salvatore F.;
Kierzek, Elzbieta;
Kierzek, Ryszard;
Baman, Jayson R.;
Moss, Walter N.;
Dela-Moss, Lumbini I.;
Turner, Douglas H.

Publication type:

Article

The 3' Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038323

By:

Moss, Walter N.;
Dela-Moss, Lumbini I.;
Kierzek, Elzbieta;
Kierzek, Ryszard;
Priore, Salvatore F.;
Turner, Douglas H.

Publication type:

Article

High-resolution crystal structure of Z-DNA in complex with Cr cations.

Published in:

Journal of Biological Inorganic Chemistry (JBIC), 2015, v. 20, n. 3, p. 595, doi. 10.1007/s00775-015-1247-5

By:

Drozdzal, Pawel;
Gilski, Miroslaw;
Kierzek, Ryszard;
Lomozik, Lechoslaw;
Jaskolski, Mariusz

Publication type:

Article

Secondary structure prediction for RNA sequences including N6-methyladenosine.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28817-4

By:

Kierzek, Elzbieta;
Zhang, Xiaoju;
Watson, Richard M.;
Kennedy, Scott D.;
Szabat, Marta;
Kierzek, Ryszard;
Mathews, David H.

Publication type:

Article

Parallel-stranded DNA and RNA duplexes - structural features and potential applications.

Published in:

FEBS Journal, 2017, v. 284, n. 23, p. 3986, doi. 10.1111/febs.14187

By:

Szabat, Marta;
Kierzek, Ryszard

Publication type:

Article

A Flexible RNA Backbone within the Polypyrimidine Tract Is Required for U2AF65 Binding and Pre-mRNA Splicing In Vivo.

Published in:

Molecular & Cellular Biology, 2010, v. 30, n. 17, p. 2, doi. 10.1128/MCB.00531-10

By:

Chun Chen;
Xinliang Zhao;
Ryszard Kierzek;
Yi-Tao Yu

Publication type:

Article

Impact of a Single Nucleotide Change or Non-Nucleoside Modifications in G-Rich Region on the Quadruplex–Duplex Hybrid Formation.

Published in:

Biomolecules (2218-273X), 2021, v. 11, n. 8, p. 1236, doi. 10.3390/biom11081236

By:

Gudanis, Dorota;
Zielińska, Karolina;
Baranowski, Daniel;
Kierzek, Ryszard;
Kozłowski, Piotr;
Gdaniec, Zofia

Publication type:

Article

RNA Secondary Structure-Based Design of Antisense Peptide Nucleic Acids for Modulating Disease-Associated Aberrant Tau Pre-mRNA Alternative Splicing.

Published in:

Molecules, 2019, v. 24, n. 16, p. 3020, doi. 10.3390/molecules24163020

By:

Ong, Alan Ann Lerk;
Tan, Jiazi;
Bhadra, Malini;
Dezanet, Clément;
Patil, Kiran M.;
Chong, Mei Sian;
Kierzek, Ryszard;
Decout, Jean-Luc;
Roca, Xavier;
Chen, Gang;
Yavin, Eylon

Publication type:

Article

RNA Secondary Structure as a First Step for Rational Design of the Oligonucleotides towards Inhibition of Influenza A Virus Replication.

Published in:

Pathogens, 2020, v. 9, n. 11, p. 925, doi. 10.3390/pathogens9110925

By:

Szabat, Marta;
Lorent, Dagny;
Czapik, Tomasz;
Tomaszewska, Maria;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

Structure determination of noncanonical RNA motifs guided by 1H NMR chemical shifts.

Published in:

Nature Methods, 2014, v. 11, n. 4, p. 413, doi. 10.1038/nmeth.2876

By:

Sripakdeevong, Parin;
Cevec, Mirko;
Chang, Andrew T;
Erat, Michèle C;
Ziegeler, Melanie;
Zhao, Qin;
Fox, George E;
Gao, Xiaolian;
Kennedy, Scott D;
Kierzek, Ryszard;
Nikonowicz, Edward P;
Schwalbe, Harald;
Sigel, Roland K O;
Turner, Douglas H;
Das, Rhiju

Publication type:

Article

Experimental and computational investigations of RNA duplexes containing N7-regioisomers of adenosine and LNA-adenosine.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 1, p. 1, doi. 10.1093/nar/gkae1222

By:

Yildirim, Ilyas;
Andralojc, Witold;
Taghavi, Amirhossein;
Baranowski, Daniel;
Gdaniec, Zofia;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Short 2′-O-methyl/LNA oligomers as highly-selective inhibitors of miRNA production in vitro and in vivo.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 10, p. 5804, doi. 10.1093/nar/gkae284

By:

Koralewska, Natalia;
Corradi, Eloina;
Milewski, Marek C;
Masante, Linda;
Szczepanska, Agnieszka;
Kierzek, Ryszard;
Figlerowicz, Marek;
Baudet, Marie-Laure;
Kurzynska-Kokorniak, Anna

Publication type:

Article

Secondary Structure of Subgenomic RNA M of SARS-CoV-2.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 2, p. 322, doi. 10.3390/v14020322

By:

Soszynska-Jozwiak, Marta;
Ruszkowska, Agnieszka;
Kierzek, Ryszard;
O'Leary, Collin A.;
Moss, Walter N.;
Kierzek, Elzbieta

Publication type:

Article

Conserved Structural Motifs of Two Distant IAV Subtypes in Genomic Segment 5 RNA.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 3, p. 525, doi. 10.3390/v13030525

By:

Michalak, Paula;
Piasecka, Julita;
Szutkowska, Barbara;
Kierzek, Ryszard;
Biala, Ewa;
Moss, Walter N.;
Kierzek, Elzbieta;
Perez, Daniel R

Publication type:

Article

Correction: A Tandem Oligonucleotide Approach for SNP-Selective RNA Degradation Using Modified Antisense Oligonucleotides.

Published in:

2016

By:

Magner, Dorota;
Biala, Ewa;
Lisowiec-Wachnicka, Jolanta;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Correction Notice

Thermodynamic Features of Structural Motifs Formed by β-L-RNA.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149478

By:

Szabat, Marta;
Gudanis, Dorota;
Kotkowiak, Weronika;
Gdaniec, Zofia;
Kierzek, Ryszard;
Pasternak, Anna

Publication type:

Article

Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148281

By:

Lenartowicz, Elzbieta;
Kesy, Julita;
Ruszkowska, Agnieszka;
Soszynska-Jozwiak, Marta;
Michalak, Paula;
Moss, Walter N.;
Turner, Douglas H.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Studies on Transcriptional Incorporation of 5’-N-Triphosphates of 5’-Amino-5’-Deoxyribonucleosides.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148282

By:

Kotkowiak, Weronika;
Pasternak, Anna;
Kierzek, Ryszard

Publication type:

Article

Structural Aspects of the Antiparallel and Parallel Duplexes Formed by DNA, 2’-O-Methyl RNA and RNA Oligonucleotides.

Published in:

PLoS ONE, 2015, v. 10, n. 11, p. 1, doi. 10.1371/journal.pone.0143354

By:

Szabat, Marta;
Pedzinski, Tomasz;
Czapik, Tomasz;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

A Tandem Oligonucleotide Approach for SNP-Selective RNA Degradation Using Modified Antisense Oligonucleotides.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0142139

By:

Magner, Dorota;
Biala, Ewa;
Lisowiec-Wachnicka, Jolanta;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141132

By:

Soszynska-Jozwiak, Marta;
Michalak, Paula;
Moss, Walter N.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Hybridization Properties of RNA Containing 8-Methoxyguanosine and 8-Benzyloxyguanosine.

Published in:

PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0137674

By:

Baranowski, Daniel Sylwester;
Kotkowiak, Weronika;
Kierzek, Ryszard;
Pasternak, Anna

Publication type:

Article

Structural determinants for alternative splicing regulation of the MAPT pre-mRNA.

Published in:

RNA Biology, 2015, v. 12, n. 3, p. 330, doi. 10.1080/15476286.2015.1017214

By:

Lisowiec, Jolanta;
Magner, Dorota;
Kierzek, Elzbieta;
Lenartowicz, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

Prevalence of Anti-SARS-CoV-2 Antibodies in Poznań, Poland, after the First Wave of the COVID-19 Pandemic.

Published in:

Vaccines, 2021, v. 9, n. 6, p. 541, doi. 10.3390/vaccines9060541

By:

Lorent, Dagny;
Nowak, Rafal;
Roxo, Carolina;
Lenartowicz, Elzbieta;
Makarewicz, Aleksandra;
Zaremba, Bartosz;
Nowak, Szymon;
Kuszel, Lukasz;
Stefaniak, Jerzy;
Kierzek, Ryszard;
Zmora, Pawel

Publication type:

Article

Computational and NMR studies of RNA duplexes with an internal pseudouridine-adenosine base pair.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-52637-0

By:

Deb, Indrajit;
Popenda, Łukasz;
Sarzyńska, Joanna;
Małgowska, Magdalena;
Lahiri, Ansuman;
Gdaniec, Zofia;
Kierzek, Ryszard

Publication type:

Article

The synthesis of oligoribonucleotides containing N6‐alkyladenosines and 2‐methylthio‐N6‐alkyladenosines via post‐synthetic modification of precursor oligomers.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 15, p. 4461, doi. 10.1093/nar/gkg632

By:

Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

The thermodynamic stability of RNA duplexes and hairpins containing N6‐alkyladenosines and 2‐methylthio‐N6‐alkyladenosines.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 15, p. 4472, doi. 10.1093/nar/gkg633

By:

Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

The non-enzymatic hydrolysis of oligoribonucleotides VI. The role of biogenic polyamines.

Published in:

Nucleic Acids Research, 1999, v. 27, n. 19, p. 3931, doi. 10.1093/nar/27.19.3931

By:

Bibillo, Arkadiusz;
Figlerowicz, Marek;
Kierzek, Ryszard;
Tabor, C.W.;
Gosule, L.C.;
Jain, S.;
Ban, C.;
Willams, L.D.;
Quigley, G.J.;
Feuerstein, B.G.;
Robinson, H.;
Frydman, L.;
Bolton, P.H.;
Thomas, T.;
Musso, M.;
Tung, C.H.;
McBride, L.J.;
Wincott, F.;
Kierzek, R.;
Bibillo, A.

Publication type:

Article

A Structural Potential of Rare Trinucleotide Repeat Tracts in RNA.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 10, p. 5850, doi. 10.3390/ijms23105850

By:

Magner, Dorota;
Nowak, Rafal;
Lenartowicz Onyekaa, Elzbieta;
Pasternak, Anna;
Kierzek, Ryszard

Publication type:

Article

Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 5, p. 2452, doi. 10.3390/ijms23052452

By:

Szutkowska, Barbara;
Wieczorek, Klaudia;
Kierzek, Ryszard;
Zmora, Pawel;
Peterson, Jake M.;
Moss, Walter N.;
Mathews, David H.;
Kierzek, Elzbieta

Publication type:

Article

Identification and Structural Aspects of G-Quadruplex-Forming Sequences from the Influenza A Virus Genome.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 11, p. 6031, doi. 10.3390/ijms22116031

By:

Tomaszewska, Maria;
Szabat, Marta;
Zielińska, Karolina;
Kierzek, Ryszard

Publication type:

Article

Secondary structure model of the naked segment 7 influenza A virus genomic RNA.

Published in:

Biochemical Journal, 2016, v. 473, n. 23, p. 4327, doi. 10.1042/BCJ20160651

By:

Ruszkowska, Agnieszka;
Lenartowicz, Elzbieta;
Moss, Walter N.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Unlocked nucleic acids: implications of increased conformational flexibility for RNA/DNA triplex formation.

Published in:

Biochemical Journal, 2014, v. 464, n. 2, p. 203, doi. 10.1042/BJ20141023

By:

Kotkowiak, Weronika;
Kotkowiak, Michat;
Kierzek, Ryszard;
Pasternak, Anna

Publication type:

Article

Case of Plasmodium knowlesi Malaria in Poland Linked to Travel in Southeast Asia.

Published in:

2019

By:

Nowak, Szymon P.;
Zmora, Paweł;
Pielok, Łukasz;
Kuszel, Łukasz;
Kierzek, Ryszard;
Stefaniak, Jerzy;
Paul, Małgorzata

Publication type:

Case Study

Stabilization of RNA hairpins using non-nucleotide linkers and circularization.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 1, doi. 10.1093/nar/gkx122

By:

Kiliszek, Agnieszka;
Bᵼaszczyk, Leszek;
Kierzek, Ryszard;
Rypniewski, Wojciech

Publication type:

Article

Structural characterization of a dimer of RNA duplexes composed of 8-bromoguanosine modified CGG trinucleotide repeats: a novel architecture of RNA quadruplexes.

Published in:

Nucleic Acids Research, 2016, v. 44, n. 5, p. 2409, doi. 10.1093/nar/gkv1534

By:

Gudanis, Dorota;
Popenda, Lukasz;
Szpotkowski, Kamil;
Kierzek, Ryszard;
Gdaniec, Zofia

Publication type:

Article

Microarrays for identifying binding sites and probing structure of RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 1, doi. 10.1093/nar/gku1303

By:

Kierzek, Ryszard;
Turner, Douglas H.;
Kierzek, Elzbieta

Publication type:

Article

Distinctive structural motifs of RNA G-quadruplexes composed of AGG, CGG and UGG trinucleotide repeats.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 15, p. 10196, doi. 10.1093/nar/gku710

By:

Malgowska, Magdalena;
Gudanis, Dorota;
Kierzek, Ryszard;
Wyszko, Eliza;
Gabelica, Valérie;
Gdaniec, Zofia

Publication type:

Article

The contribution of pseudouridine to stabilities and structure of RNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 5, p. 3492, doi. 10.1093/nar/gkt1330

By:

Kierzek, Elzbieta;
Malgowska, Magdalena;
Lisowiec, Jolanta;
Turner, Douglas H.;
Gdaniec, Zofia;
Kierzek, Ryszard

Publication type:

Article

Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 13, p. 6664, doi. 10.1093/nar/gkt352

By:

Zhou, Yuan;
Kierzek, Elzbieta;
Loo, Zi Ping;
Antonio, Meraldo;
Yau, Yin Hoe;
Chuah, York Wieo;
Geifman-Shochat, Susana;
Kierzek, Ryszard;
Chen, Gang

Publication type:

Article

Crystallographic characterization of CCG repeats.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 8155, doi. 10.1093/nar/gks557

By:

Kiliszek, Agnieszka;
Kierzek, Ryszard;
Krzyzosiak, Wlodzimierz J.;
Rypniewski, Wojciech

Publication type:

Article

Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 16, p. 7308, doi. 10.1093/nar/gkr368

By:

Kiliszek, Agnieszka;
Kierzek, Ryszard;
Krzyzosiak, Wlodzimierz J.;
Rypniewski, Wojciech

Publication type:

Article