Works by Kierzek, Elzbieta

Results: 32

The Spontaneous Rearrangement of 2,4-Dinitrophenyl Substituent in Ribonucleosides Under Neutral Conditions.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2010, v. 29, n. 9, p. 684, doi. 10.1080/15257770.2010.507233

By:

Olejnik, Anna;
Gdaniec, Zofia;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function.

Published in:

Nucleic Acids Research, 2008, v. 36, n. 6, p. 1770, doi. 10.1093/nar/gkm1085

By:

Kierzek, Elzbieta;
Kierzek, Ryszard;
Moss, Walter N.;
Christensen, Shawn M.;
Eickbush, Thomas H.;
Turner, Douglas H.

Publication type:

Article

A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2′-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4055, doi. 10.1093/nar/gkm421

By:

Pasternak, Anna;
Kierzek, Elzbieta;
Pasternak, Karol;
Turner, Douglas H.;
Kierzek, Ryszard

Publication type:

Article

Nearest neighbor parameters for Watson–Crick complementary heteroduplexes formed between 2′-O-methyl RNA and RNA oligonucleotides.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 13, p. 3609, doi. 10.1093/nar/gkl232

By:

Kierzek, Elzbieta;
Mathews, David H.;
Ciesielska, Anna;
Turner, Douglas H.;
Kierzek, Ryszard

Publication type:

Article

The influence of locked nucleic acid residues on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 16, p. 5082, doi. 10.1093/nar/gki789

By:

Kierzek, Elzbieta;
Ciesielska, Anna;
Pasternak, Karol;
Mathews, David H.;
Turner, Douglas H.;
Kierzek, Ryszard

Publication type:

Article

The thermodynamic stability of RNA duplexes and hairpins containing N6‐alkyladenosines and 2‐methylthio‐N6‐alkyladenosines.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 15, p. 4472, doi. 10.1093/nar/gkg633

By:

Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

The synthesis of oligoribonucleotides containing N6‐alkyladenosines and 2‐methylthio‐N6‐alkyladenosines via post‐synthetic modification of precursor oligomers.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 15, p. 4461, doi. 10.1093/nar/gkg632

By:

Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

Correction: A Tandem Oligonucleotide Approach for SNP-Selective RNA Degradation Using Modified Antisense Oligonucleotides.

Published in:

2016

By:

Magner, Dorota;
Biala, Ewa;
Lisowiec-Wachnicka, Jolanta;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Correction Notice

Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0148281

By:

Lenartowicz, Elzbieta;
Kesy, Julita;
Ruszkowska, Agnieszka;
Soszynska-Jozwiak, Marta;
Michalak, Paula;
Moss, Walter N.;
Turner, Douglas H.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Secondary structure model of the naked segment 7 influenza A virus genomic RNA.

Published in:

Biochemical Journal, 2016, v. 473, n. 23, p. 4327, doi. 10.1042/BCJ20160651

By:

Ruszkowska, Agnieszka;
Lenartowicz, Elzbieta;
Moss, Walter N.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Anti-Influenza Strategies Based on Nanoparticle Applications.

Published in:

Pathogens, 2020, v. 9, n. 12, p. 1020, doi. 10.3390/pathogens9121020

By:

Wieczorek, Klaudia;
Szutkowska, Barbara;
Kierzek, Elzbieta

Publication type:

Article

Organization of the Influenza A Virus Genomic RNA in the Viral Replication Cycle—Structure, Interactions, and Implications for the Emergence of New Strains.

Published in:

Pathogens, 2020, v. 9, n. 11, p. 951, doi. 10.3390/pathogens9110951

By:

Piasecka, Julita;
Jarmolowicz, Aleksandra;
Kierzek, Elzbieta

Publication type:

Article

RNA Secondary Structure as a First Step for Rational Design of the Oligonucleotides towards Inhibition of Influenza A Virus Replication.

Published in:

Pathogens, 2020, v. 9, n. 11, p. 925, doi. 10.3390/pathogens9110925

By:

Szabat, Marta;
Lorent, Dagny;
Czapik, Tomasz;
Tomaszewska, Maria;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

Structural determinants for alternative splicing regulation of the MAPT pre-mRNA.

Published in:

RNA Biology, 2015, v. 12, n. 3, p. 330, doi. 10.1080/15476286.2015.1017214

By:

Lisowiec, Jolanta;
Magner, Dorota;
Kierzek, Elzbieta;
Lenartowicz, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

Structural and Functional RNA Motifs of SARS-CoV-2 and Influenza A Virus as a Target of Viral Inhibitors.

Published in:

2023

By:

Szczesniak, Izabela;
Baliga-Gil, Agnieszka;
Jarmolowicz, Aleksandra;
Soszynska-Jozwiak, Marta;
Kierzek, Elzbieta

Publication type:

Literature Review

Secondary Structure of Influenza A Virus Genomic Segment 8 RNA Folded in a Cellular Environment.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 5, p. 2452, doi. 10.3390/ijms23052452

By:

Szutkowska, Barbara;
Wieczorek, Klaudia;
Kierzek, Ryszard;
Zmora, Pawel;
Peterson, Jake M.;
Moss, Walter N.;
Mathews, David H.;
Kierzek, Elzbieta

Publication type:

Article

Modified RNA triplexes: Thermodynamics, structure and biological potential.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31387-5

By:

Szabat, Marta;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

Microarrays for identifying binding sites and probing structure of RNAs.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 1, p. 1, doi. 10.1093/nar/gku1303

By:

Kierzek, Ryszard;
Turner, Douglas H.;
Kierzek, Elzbieta

Publication type:

Article

The contribution of pseudouridine to stabilities and structure of RNAs.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 5, p. 3492, doi. 10.1093/nar/gkt1330

By:

Kierzek, Elzbieta;
Malgowska, Magdalena;
Lisowiec, Jolanta;
Turner, Douglas H.;
Gdaniec, Zofia;
Kierzek, Ryszard

Publication type:

Article

Recognition of RNA duplexes by chemically modified triplex-forming oligonucleotides.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 13, p. 6664, doi. 10.1093/nar/gkt352

By:

Zhou, Yuan;
Kierzek, Elzbieta;
Loo, Zi Ping;
Antonio, Meraldo;
Yau, Yin Hoe;
Chuah, York Wieo;
Geifman-Shochat, Susana;
Kierzek, Ryszard;
Chen, Gang

Publication type:

Article

TMV mutants with poly(A) tracts of different lengths demonstrate structural variations in 3′UTR affecting viral RNAs accumulation and symptom expression.

Published in:

Scientific Reports, 2015, p. 18412, doi. 10.1038/srep18412

By:

Guo, Song;
Kierzek, Elzbieta;
Chen, Gang;
Zhou, Yi-Jun;
Wong, Sek-Man

Publication type:

Article

Secondary Structure of Subgenomic RNA M of SARS-CoV-2.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 2, p. 322, doi. 10.3390/v14020322

By:

Soszynska-Jozwiak, Marta;
Ruszkowska, Agnieszka;
Kierzek, Ryszard;
O'Leary, Collin A.;
Moss, Walter N.;
Kierzek, Elzbieta

Publication type:

Article

Conserved Structural Motifs of Two Distant IAV Subtypes in Genomic Segment 5 RNA.

Published in:

Viruses (1999-4915), 2021, v. 13, n. 3, p. 525, doi. 10.3390/v13030525

By:

Michalak, Paula;
Piasecka, Julita;
Szutkowska, Barbara;
Kierzek, Ryszard;
Biala, Ewa;
Moss, Walter N.;
Kierzek, Elzbieta;
Perez, Daniel R

Publication type:

Article

Structural Aspects of the Antiparallel and Parallel Duplexes Formed by DNA, 2’-O-Methyl RNA and RNA Oligonucleotides.

Published in:

PLoS ONE, 2015, v. 10, n. 11, p. 1, doi. 10.1371/journal.pone.0143354

By:

Szabat, Marta;
Pedzinski, Tomasz;
Czapik, Tomasz;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

A Tandem Oligonucleotide Approach for SNP-Selective RNA Degradation Using Modified Antisense Oligonucleotides.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0142139

By:

Magner, Dorota;
Biala, Ewa;
Lisowiec-Wachnicka, Jolanta;
Kierzek, Elzbieta;
Kierzek, Ryszard

Publication type:

Article

A Conserved Secondary Structural Element in the Coding Region of the Influenza A Virus Nucleoprotein (NP) mRNA Is Important for the Regulation of Viral Proliferation.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141132

By:

Soszynska-Jozwiak, Marta;
Michalak, Paula;
Moss, Walter N.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Secondary Structure of a Conserved Domain in the Intron of Influenza A NS1 mRNA.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0070615

By:

Priore, Salvatore F.;
Kierzek, Elzbieta;
Kierzek, Ryszard;
Baman, Jayson R.;
Moss, Walter N.;
Dela-Moss, Lumbini I.;
Turner, Douglas H.

Publication type:

Article

The 3' Splice Site of Influenza A Segment 7 mRNA Can Exist in Two Conformations: A Pseudoknot and a Hairpin.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038323

By:

Moss, Walter N.;
Dela-Moss, Lumbini I.;
Kierzek, Elzbieta;
Kierzek, Ryszard;
Priore, Salvatore F.;
Turner, Douglas H.

Publication type:

Article

In vivo secondary structural analysis of Influenza A virus genomic RNA.

Published in:

Cellular & Molecular Life Sciences, 2023, v. 80, n. 5, p. 1, doi. 10.1007/s00018-023-04764-1

By:

Mirska, Barbara;
Woźniak, Tomasz;
Lorent, Dagny;
Ruszkowska, Agnieszka;
Peterson, Jake M.;
Moss, Walter N.;
Mathews, David H.;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Experimental and computational investigations of RNA duplexes containing N7-regioisomers of adenosine and LNA-adenosine.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 1, p. 1, doi. 10.1093/nar/gkae1222

By:

Yildirim, Ilyas;
Andralojc, Witold;
Taghavi, Amirhossein;
Baranowski, Daniel;
Gdaniec, Zofia;
Kierzek, Ryszard;
Kierzek, Elzbieta

Publication type:

Article

Secondary structure prediction for RNA sequences including N<sup>6</sup>-methyladenosine.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28817-4

By:

Kierzek, Elzbieta;
Zhang, Xiaoju;
Watson, Richard M.;
Kennedy, Scott D.;
Szabat, Marta;
Kierzek, Ryszard;
Mathews, David H.

Publication type:

Article

Secondary structure prediction for RNA sequences including N<sup>6</sup>-methyladenosine.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28817-4

By:

Kierzek, Elzbieta;
Zhang, Xiaoju;
Watson, Richard M.;
Kennedy, Scott D.;
Szabat, Marta;
Kierzek, Ryszard;
Mathews, David H.

Publication type:

Article