Works by Khurana, Ekta

Results: 26

DeepMILO: a deep learning approach to predict the impact of non-coding sequence variants on 3D chromatin structure.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-01987-4

By:

Trieu, Tuan;
Martinez-Fundichely, Alexander;
Khurana, Ekta

Publication type:

Article

Germination and seedling growth of five tree species from tropical dry forest in relation to water stress: impact of seed size.

Published in:

Journal of Tropical Ecology, 2004, v. 20, n. 4, p. 385, doi. 10.1017/S026646740400135X

By:

Khurana, Ekta;
Singh, J. S.

Publication type:

Article

Segmental duplications in the human genome reveal details of pseudogene formation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 20, p. 6997, doi. 10.1093/nar/gkq587

By:

Khurana, Ekta;
Lam, Hugo Y. K.;
Cheng, Chao;
Carriero, Nicholas;
Cayting, Philip;
Gerstein, Mark B.

Publication type:

Article

Pseudofam: the pseudogene families database.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D738, doi. 10.1093/nar/gkn758

By:

Lam, Hugo Y. K.;
Khurana, Ekta;
Fang, Gang;
Cayting, Philip;
Carriero, Nicholas;
Cheung, Kei-Hoi;
Gerstein, Mark B.

Publication type:

Article

Identification of novel prostate cancer drivers using RegNetDriver: a framework for integration of genetic and epigenetic alterations with tissue-specific regulatory network.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1266-3

By:

Dhingra, Priyanka;
Martinez-Fundichely, Alexander;
Berger, Adeline;
Huang, Franklin W.;
Forbes, Andre Neil;
Liu, Eric Minwei;
Liu, Deli;
Sboner, Andrea;
Tamayo, Pablo;
Rickman, David S.;
Rubin, Mark A.;
Khurana, Ekta

Publication type:

Article

Response of five dry tropical tree seedlings to elevated CO<sub>2</sub>: Impact of seed size and successional status.

Published in:

New Forests, 2004, v. 27, n. 2, p. 139, doi. 10.1023/A:1025018108634

By:

Khurana, Ekta;
Singh, J. S.

Publication type:

Article

Correlation of exercise capacity with left ventricle diastolic function.

Published in:

International Archives of Integrated Medicine, 2019, v. 6, n. 10, p. 50

By:

Khurana, Ekta;
Binawara, B. K.

Publication type:

Article

Correlation of exercise capacity with Cardiovascular systolic function.

Published in:

International Archives of Integrated Medicine, 2019, v. 6, n. 5, p. 51

By:

Khurana, Ekta;
Binawara, B. K.

Publication type:

Article

Determination of cardiovascular fitness in young healthy medical students.

Published in:

International Archives of Integrated Medicine, 2016, v. 3, n. 10, p. 74

By:

Khurana, Ekta;
Oommen, E. R.

Publication type:

Article

Cardiovascular response to exercise in young healthy medical students.

Published in:

International Archives of Integrated Medicine, 2016, v. 3, n. 7, p. 115

By:

Khurana, Ekta;
Oomenn, E. R.

Publication type:

Article

Modeling tissue-specific breakpoint proximity of structural variations from whole-genomes to identify cancer drivers.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32945-2

By:

Martinez-Fundichely, Alexander;
Dixon, Austin;
Khurana, Ekta

Publication type:

Article

VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment.

Published in:

Bioinformatics, 2012, v. 28, n. 17, p. 2267, doi. 10.1093/bioinformatics/bts368

By:

Habegger, Lukas;
Balasubramanian, Suganthi;
Chen, David Z.;
Khurana, Ekta;
Sboner, Andrea;
Harmanci, Arif;
Rozowsky, Joel;
Clarke, Declan;
Snyder, Michael;
Gerstein, Mark

Publication type:

Article

Using semantic web rules to reason on an ontology of pseudogenes.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. i71, doi. 10.1093/bioinformatics/btq173

By:

Holford, Matthew E.;
Khurana, Ekta;
Kei-Hoi Cheung;
Gerstein, Mark

Publication type:

Article

Cellular Superspreaders: An Epidemiological Perspective on HIV Infection inside the Body.

Published in:

2014

By:

Talbert-Slagle, Kristina;
Atkins, Katherine E.;
Yan, Koon-Kiu;
Khurana, Ekta;
Gerstein, Mark;
Bradley, Elizabeth H.;
Berg, David;
Galvani, Alison P.;
Townsend, Jeffrey P.

Publication type:

Opinion

Influence of Seed Size on Seedling Growth of Albizia procera Under Different Soil Water Levels.

Published in:

Annals of Botany, 2000, v. 86, n. 6, p. 1185, doi. 10.1006/anbo.2000.1288

By:

Ekta Khurana;
J. Singh

Publication type:

Article

Inherited determinants of early recurrent somatic mutations in prostate cancer.

Published in:

Nature Communications, 2017, v. 8, n. 6, p. 1, doi. 10.1038/s41467-017-00046-0

By:

Romanel, Alessandro;
Garritano, Sonia;
Stringa, Blerta;
Blattner, Mirjam;
Dalfovo, Davide;
Chakravarty, Dimple;
Soong, David;
Cotter, Kellie A.;
Petris, Gianluca;
Dhingra, Priyanka;
Gasperini, Paola;
Cereseto, Anna;
Elemento, Olivier;
Sboner, Andrea;
Khurana, Ekta;
Inga, Alberto;
Rubin, Mark A.;
Demichelis, Francesca

Publication type:

Article

Interpretation of Genomic Variants Using a Unified Biological Network Approach.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002886

By:

Khurana, Ekta;
Yao Fu;
Jieming Chen;
Gerstein, Mark

Publication type:

Article

LARVA: an integrative framework for large-scale analysis of recurrent variants in noncoding annotations.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 17, p. 8123, doi. 10.1093/nar/gkv803

By:

Lochovsky, Lucas;
Jing Zhang;
Yao Fu;
Khurana, Ekta;
Gerstein, Mark

Publication type:

Article

FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0480-5

By:

Yao Fu;
Zhu Liu;
Shaoke Lou;
Bedford, Jason;
Xinmeng Jasmine Mu;
Yip, Kevin Y.;
Khurana, Ekta;
Gerstein, Mark

Publication type:

Article

Learning to swim in a sea of genomic data.

Published in:

Genome Biology, 2013, v. 14, n. 12, p. 1, doi. 10.1186/gb4144

By:

Khurana, Ekta

Publication type:

Article

Loss-of-function tolerance of enhancers in the human genome.

Published in:

PLoS Genetics, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pgen.1008663

By:

Xu, Duo;
Gokcumen, Omer;
Khurana, Ekta

Publication type:

Article

Architecture of the human regulatory network derived from ENCODE data.

Published in:

Nature, 2012, v. 489, n. 7414, p. 91, doi. 10.1038/nature11245

By:

Gerstein, Mark B.;
Kundaje, Anshul;
Hariharan, Manoj;
Landt, Stephen G.;
Yan, Koon-Kiu;
Cheng, Chao;
Mu, Xinmeng Jasmine;
Khurana, Ekta;
Rozowsky, Joel;
Alexander, Roger;
Min, Renqiang;
Alves, Pedro;
Abyzov, Alexej;
Addleman, Nick;
Bhardwaj, Nitin;
Boyle, Alan P.;
Cayting, Philip;
Charos, Alexandra;
Chen, David Z.;
Cheng, Yong

Publication type:

Article

Impact of elevated nitrogen inputs on seedling growth of five dry tropical tree species as affected by life-history traits.

Published in:

Canadian Journal of Botany, 2004, v. 82, n. 2, p. 158, doi. 10.1139/b03-132

By:

Khurana, Ekta;
Singh, J. S.

Publication type:

Article

Pathway and network analysis of more than 2500 whole cancer genomes.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-14367-0

By:

Reyna, Matthew A.;
Haan, David;
Paczkowska, Marta;
Verbeke, Lieven P. C.;
Vazquez, Miguel;
Kahraman, Abdullah;
Pulido-Tamayo, Sergio;
Barenboim, Jonathan;
Wadi, Lina;
Dhingra, Priyanka;
Shrestha, Raunak;
Getz, Gad;
Lawrence, Michael S.;
Pedersen, Jakob Skou;
Rubin, Mark A.;
Wheeler, David A.;
Brunak, Søren;
Izarzugaza, Jose M. G.;
Khurana, Ekta;
Marchal, Kathleen

Publication type:

Article

MYBL1 rearrangements and MYB amplification in breast adenoid cystic carcinomas lacking the MYB–NFIB fusion gene.

Published in:

Journal of Pathology, 2018, v. 244, n. 2, p. 143, doi. 10.1002/path.5006

By:

Kim, Jisun;
Geyer, Felipe C.;
Martelotto, Luciano G.;
Ng, Charlotte K. Y.;
Lim, Raymond S.;
Selenica, Pier;
Li, Anqi;
Pareja, Fresia;
Fusco, Nicola;
Edelweiss, Marcia;
Kumar, Rahul;
Gularte‐Merida, Rodrigo;
Forbes, Andre N.;
Khurana, Ekta;
Mariani, Odette;
Badve, Sunil;
Vincent‐Salomon, Anne;
Norton, Larry;
Reis‐Filho, Jorge S.;
Weigelt, Britta

Publication type:

Article

Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity.

Published in:

BMC Genomics, 2009, v. 10, p. 480, doi. 10.1186/1471-2164-10-480

By:

Yuen-Jong Liu;
Deyou Zheng;
Balasubramanian, Suganthi;
Carriero, Nicholas;
Khurana, Ekta;
Robilotto, Rebecca;
Gerstein, Mark B.

Publication type:

Article