Works by Khanipov, Kamil

Results: 47

The gut microbiota is not linked to acute noise-induced hearing loss in C57BL/6 mice.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-07669-0

By:

Sato, Kasumi;
Araya, Katherine;
Wu, Cathryn;
Dong, Emily;
Watson, Riley;
Maskey, Manjit;
Nguyen, Chau D.;
Khanipov, Kamil;
Yang, Qing;
Wu, Zizhen

Publication type:

Article

Assessing the utility of metabarcoding for diet analyses of the omnivorous wild pig ( Sus scrofa).

Published in:

Ecology & Evolution (20457758), 2018, v. 8, n. 1, p. 185, doi. 10.1002/ece3.3638

By:

Robeson, II, Michael S.;
Khanipov, Kamil;
Golovko, George;
Wisely, Samantha M.;
White, Michael D.;
Bodenchuck, Michael;
Smyser, Timothy J.;
Fofanov, Yuriy;
Fierer, Noah;
Piaggio, Antoinette J.

Publication type:

Article

Measuring Alphavirus Fidelity Using Non-Infectious Virus Particles.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 5, p. 546, doi. 10.3390/v12050546

By:

Patterson, Edward I.;
Khanipov, Kamil;
Swetnam, Daniele M.;
Walsdorf, Samantha;
Kautz, Tiffany F.;
Thangamani, Saravanan;
Fofanov, Yuriy;
Forrester, Naomi L.

Publication type:

Article

Interkingdom interactions shape the fungal microbiome of mosquitoes.

Published in:

Animal Microbiome, 2024, v. 6, n. 1, p. 1, doi. 10.1186/s42523-024-00298-4

By:

Hegde, Shivanand;
Khanipov, Kamil;
Hornett, Emily A.;
Nilyanimit, Pornjarim;
Pimenova, Maria;
Saldaña, Miguel A.;
de Bekker, Charissa;
Golovko, George;
Hughes, Grant L.

Publication type:

Article

Novel Ex Vivo Model to Examine the Mechanism and Relationship of Esophageal Microbiota and Disease.

Published in:

Biomedicines, 2021, v. 9, n. 2, p. 142, doi. 10.3390/biomedicines9020142

By:

Cass, Samuel;
Hamilton, Catherine;
Miller, Aaron;
Jupiter, Daniel;
Khanipov, Kamil;
Booth, Adam;
Pyles, Richard;
Krill, Timothy;
Reep, Gabriel;
Okereke, Ikenna;
Bezirtzoglou, Eugenia;
Stavropoulou, Elisavet;
Biondi, Antonio

Publication type:

Article

Janibacter species with evidence of genomic polymorphism isolated from resected heart valve in a patient with aortic stenosis.

Published in:

Infectious Disease Reports, 2019, v. 11, n. 2, p. 22, doi. 10.4081/idr.2019.8132

By:

Malania, Lile;
Ying Bai;
Khanipov, Kamil;
Tsereteli, Marika;
Metreveli, Mikheil;
Tsereteli, David;
Sidamonidze, Ketevan;
Imnadze, Paata;
Fofanov, Yuriy;
Kosoy, Michael

Publication type:

Article

Development of a Recombinase-Mediated Cassette Exchange System for Gene Knockout and Expression of Non-Native Gene Sequences in Rickettsia.

Published in:

Vaccines, 2025, v. 13, n. 2, p. 109, doi. 10.3390/vaccines13020109

By:

Cull, Benjamin;
Burkhardt, Nicole Y.;
Khoo, Benedict S.;
Oliver, Jonathan D.;
Wang, Xin-Ru;
Price, Lisa D.;
Khanipov, Kamil;
Fang, Rong;
Munderloh, Ulrike G.

Publication type:

Article

Development of a Recombinase-Mediated Cassette Exchange System for Gene Knockout and Expression of Non-Native Gene Sequences in Rickettsia.

Published in:

Vaccines, 2025, v. 13, n. 2, p. 109, doi. 10.3390/vaccines13020109

By:

Cull, Benjamin;
Burkhardt, Nicole Y.;
Khoo, Benedict S.;
Oliver, Jonathan D.;
Wang, Xin-Ru;
Price, Lisa D.;
Khanipov, Kamil;
Fang, Rong;
Munderloh, Ulrike G.

Publication type:

Article

Identification of multidimensional Boolean patterns in microbial communities.

Published in:

Microbiome, 2020, v. 8, n. 1, p. N.PAG, doi. 10.1186/s40168-020-00853-6

By:

Golovko, George;
Kamil, Khanipov;
Albayrak, Levent;
Nia, Anna M.;
Duarte, Renato Salomon Arroyo;
Chumakov, Sergei;
Fofanov, Yuriy

Publication type:

Article

The relationship of social determinants and distress in newly diagnosed cancer patients.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-29375-5

By:

Okeke, Brandon;
Hillmon, Cheron;
Jones, Jasmine;
Obanigba, Grace;
Obi, Ann;
Nkansah, Meagan;
Odiase, Nicholas;
Khanipov, Kamil;
Okereke, Ikenna C.

Publication type:

Article

Global Transcriptomic Profiling of Pulmonary Gene Expression in an Experimental Murine Model of Rickettsia conorii Infection.

Published in:

Genes, 2019, v. 10, n. 3, p. 204, doi. 10.3390/genes10030204

By:

Narra, Hema P.;
Sahni, Abha;
Khanipov, Kamil;
Fofanov, Yuriy;
Sahni, Sanjeev K.

Publication type:

Article

Variable microbiomes between mosquito lines are maintained across different environments.

Published in:

PLoS Neglected Tropical Diseases, 2023, v. 17, n. 9, p. 1, doi. 10.1371/journal.pntd.0011306

By:

Accoti, Anastasia;
Quek, Shannon;
Vulcan, Julia;
Cansado-Utrilla, Cintia;
Anderson, Enyia R.;
Abu, Angel Elma I.;
Alsing, Jessica;
Narra, Hema P.;
Khanipov, Kamil;
Hughes, Grant L.;
Dickson, Laura B.

Publication type:

Article

Efficient identification of multiple pathways: RNA-Seq analysis of livers from 56Fe ion irradiated mice.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3446-5

By:

Nia, Anna M.;
Chen, Tianlong;
Barnette, Brooke L.;
Khanipov, Kamil;
Ullrich, Robert L.;
Bhavnani, Suresh K.;
Emmett, Mark R.

Publication type:

Article

Nasopharyngeal microbiota in infants and changes during viral upper respiratory tract infection and acute otitis media.

Published in:

PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0180630

By:

Chonmaitree, Tasnee;
Jennings, Kristofer;
Golovko, Georgiy;
Khanipov, Kamil;
Pimenova, Maria;
Patel, Janak A.;
McCormick, David P.;
Loeffelholz, Michael J.;
Fofanov, Yuriy

Publication type:

Article

Viral RNA-dependent RNA polymerase mutants display an altered mutation spectrum resulting in attenuation in both mosquito and vertebrate hosts.

Published in:

PLoS Pathogens, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.ppat.1007610

By:

Warmbrod, K. Lane;
Patterson, Edward I.;
Kautz, Tiffany F.;
Stanton, Adam;
Rockx-Brouwer, Dedeke;
Kalveram, Birte K.;
Khanipov, Kamil;
Thangamani, Saravanan;
Fofanov, Yuriy;
Forrester, Naomi L.

Publication type:

Article

Broom: application for non-redundant storage of high throughput sequencing data.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 143, doi. 10.1093/bioinformatics/bty580

By:

Albayrak, Levent;
Golovko, George;
Fofanov, Yuriy;
Khanipov, Kamil

Publication type:

Article

Detection of multi-dimensional co-exclusion patterns in microbial communities.

Published in:

Bioinformatics, 2018, v. 34, n. 21, p. 3695, doi. 10.1093/bioinformatics/bty414

By:

Albayrak, Levent;
Golovko, George;
Fofanov, Yuriy;
Khanipov, Kamil

Publication type:

Article

373 Identification of potential targets for immunotherapy in a cynomolgus macaque model of Ebola virus disease.

Published in:

2023

By:

Wanninger, Timothy;
Saldarriaga, Omar A.;
Millian, Daniel E.;
Comer, Jason E.;
Khanipov, Kamil;
Golovko, George;
Paessler, Slobodan;
Stevenson, Heather L.

Publication type:

Abstract

4471 Interactions of the Infant Nasopharyngeal Microbiota and Subjects' Clinical Traits in Development of Viral Upper Respiratory Tract Infections and Acute Otitis Media.

Published in:

2020

By:

Khanipov, Kamil;
Golovko, George;
Nia, Anna;
Evangelista, Lorraine;
Fofanov, Yuriy

Publication type:

Abstract

4462 Effects of Injectable, Erythropoietin and Glucocorticoids Combinational Therapy on Erythrocyte Sedimentation Rate Following Spinal Cord Injury.

Published in:

2020

By:

Nia, Anna;
Khanipov, Kamil;
Golovko, George

Publication type:

Abstract

Identification and Characterization of Novel Small RNAs in Rickettsia prowazekii.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00859

By:

Schroeder, Casey L. C.;
Narra, Hema P.;
Sahni, Abha;
Rojas, Mark;
Khanipov, Kamil;
Patel, Jignesh;
Shah, Riya;
Fofanov, Yuriy;
Sahni, Sanjeev K.

Publication type:

Article

Characterizing temporal and global host innate immune responses against SARS-CoV-1 and -2 infection in pathologically relevant human lung epithelial cells.

Published in:

PLoS ONE, 2025, v. 20, n. 1, p. 1, doi. 10.1371/journal.pone.0317921

By:

Tat, Vivian Y.;
Drelich, Aleksandra K.;
Huang, Pinghan;
Khanipov, Kamil;
Hsu, Jason C.;
Widen, Steven G.;
Tseng, Chien-Te Kent;
Golovko, George

Publication type:

Article

Microbial interactions in the mosquito gut determine Serratia colonization and blood-feeding propensity.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 1, p. 93, doi. 10.1038/s41396-020-00763-3

By:

Kozlova, Elena V.;
Hegde, Shivanand;
Roundy, Christopher M.;
Golovko, George;
Saldaña, Miguel A.;
Hart, Charles E.;
Anderson, Enyia R.;
Hornett, Emily A.;
Khanipov, Kamil;
Popov, Vsevolod L.;
Pimenova, Maria;
Zhou, Yiyang;
Fovanov, Yuriy;
Weaver, Scott C.;
Routh, Andrew L.;
Heinz, Eva;
Hughes, Grant L.

Publication type:

Article

Bacterial small RNAs in the Genus Rickettsia.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2293-7

By:

Schroeder, Casey L. C.;
Narra, Hema P.;
Rojas, Mark;
Sahni, Abha;
Patel, Jignesh;
Khanipov, Kamil;
Wood, Thomas G.;
Fofanov, Yuriy;
Sahni, Sanjeev K.

Publication type:

Article

Microbiota dysbiosis and its pathophysiological significance in bowel obstruction.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31033-0

By:

Hegde, Shrilakshmi;
Lin, You-Min;
Golovko, George;
Khanipov, Kamil;
Cong, Yingzi;
Savidge, Tor;
Fofanov, Yuriy;
Shi, Xuan-Zheng

Publication type:

Article

Transition Mutations in the hTERT Promoter Are Unrelated to Potential i-motif Formation in the C-Rich Strand.

Published in:

Biomolecules (2218-273X), 2023, v. 13, n. 9, p. 1308, doi. 10.3390/biom13091308

By:

Conrad, James W.;
Sowers, Mark L.;
Yap, Dianne Y.;
Cherryhomes, Ellie;
Pettitt, B. Montgomery;
Khanipov, Kamil;
Sowers, Lawrence C.

Publication type:

Article

Exclusive Enteral Nutrition Beneficially Modulates Gut Microbiome in a Preclinical Model of Crohn's-like Colitis.

Published in:

Nutrients, 2024, v. 16, n. 3, p. 363, doi. 10.3390/nu16030363

By:

Geesala, Ramasatyaveni;
Recharla, Neeraja;
Zhang, Ke;
Johnson, John C.;
Golovko, George;
Khanipov, Kamil;
Brining, Douglas L.;
Shi, Xuan-Zheng

Publication type:

Article

Scoping Review of Microbiota Dysbiosis and Risk of Preeclampsia.

Published in:

American Journal of Reproductive Immunology, 2024, v. 92, n. 4, p. 1, doi. 10.1111/aji.70003

By:

Jordan, Madeleine M.;
Amabebe, Emmanuel;
Khanipov, Kamil;
Taylor, Brandie DePaoli

Publication type:

Article

16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics.

Published in:

PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0213869

By:

Peterson, Christine Tara;
Sharma, Vandana;
Iablokov, Stanislav N.;
Albayrak, Levent;
Khanipov, Kamil;
Uchitel, Sasha;
Chopra, Deepak;
Mills, Paul J.;
Fofanov, Yuriy;
Rodionov, Dmitry A.;
Peterson, Scott N.

Publication type:

Article

Impairment of Tissue-Resident Mesenchymal Stem Cells in Chronic Ulcerative Colitis and Crohn's Disease.

Published in:

Journal of Crohn's & Colitis, 2021, v. 15, n. 8, p. 1362, doi. 10.1093/ecco-jcc/jjab001

By:

Grim, Carl;
Noble, Robert;
Uribe, Gabriela;
Khanipov, Kamil;
Johnson, Paul;
Koltun, Walter A;
Watts, Tammara;
Fofanov, Yuriy;
Yochum, Gregory S;
Powell, Don W;
Beswick, Ellen J;
Pinchuk, Irina V

Publication type:

Article

Slim-Filter: an interactive windows-based application for illumina genome analyzer data assessment and manipulation.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 166, doi. 10.1186/1471-2105-13-166

By:

Golovko, Georgiy;
Khanipov, Kamil;
Rojas, Mark;
Martinez-Alcántara, Antonio;
Howard, Jesse J.;
Ballesteros, Efren;
Gupta, Sharu;
Widger, William;
Fofanov, Yuriy

Publication type:

Article

Reduced microbe abundance in an urban larval development container increases Aedes aegypti susceptibility to Zika virus.

Published in:

PLoS Pathogens, 2025, v. 21, n. 5, p. 1, doi. 10.1371/journal.ppat.1013154

By:

Becker, Margaret V.;
Accoti, Anastasia;
Abu, Angel Elma I.;
Vulcan, Julia;
Sylla, Massamba;
Khanipov, Kamil;
Dickson, Laura B.

Publication type:

Article

PGRMC2 and HLA-G regulate immune homeostasis in a microphysiological model of human maternal-fetal membrane interface.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06740-2

By:

Lintao, Ryan C. V.;
Richardson, Lauren S.;
Kammala, Ananth Kumar;
Chapa, Jenieve;
Yunque-Yap, Dianne Aster;
Khanipov, Kamil;
Golovko, George;
Dalmacio, Leslie Michelle M.;
Menon, Ramkumar

Publication type:

Article

High‐protein vs. standard‐protein diets in overweight and obese patients with heart failure and diabetes mellitus: findings of the Pro‐HEART trial.

Published in:

ESC Heart Failure, 2021, v. 8, n. 2, p. 1342, doi. 10.1002/ehf2.13213

By:

Evangelista, Lorraine S.;
Jose, Mini M.;
Sallam, Hanaa;
Serag, Hani;
Golovko, George;
Khanipov, Kamil;
Hamilton, Michele A.;
Fonarow, Gregg C.

Publication type:

Article

Subversion of Host Innate Immunity by Rickettsia australis via a Modified Autophagic Response in Macrophages.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.638469

By:

Bechelli, Jeremy;
Rumfield, Claire S.;
Walker, David H.;
Widen, Steven;
Khanipov, Kamil;
Fang, Rong

Publication type:

Article

Comparative transcriptomic analysis of Rickettsia conorii during in vitro infection of human and tick host cells.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07077-w

By:

Narra, Hema P.;
Sahni, Abha;
Alsing, Jessica;
Schroeder, Casey L. C.;
Golovko, George;
Nia, Anna M.;
Fofanov, Yuriy;
Khanipov, Kamil;
Sahni, Sanjeev K.

Publication type:

Article

Comparative RNA-Seq transcriptome analyses reveal dynamic time-dependent effects of 56Fe, 16O, and 28Si irradiation on the induction of murine hepatocellular carcinoma.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-06869-4

By:

Nia, Anna M.;
Khanipov, Kamil;
Barnette, Brooke L.;
Ullrich, Robert L.;
Golovko, George;
Emmett, Mark R.

Publication type:

Article

The influence of the larval microbiome on susceptibility to Zika virus is mosquito genotype-dependent.

Published in:

PLoS Pathogens, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.ppat.1011727

By:

Accoti, Anastasia;
Multini, Laura C.;
Diouf, Babakar;
Becker, Margaret;
Vulcan, Julia;
Sylla, Massamba;
Yap, Dianne Y.;
Khanipov, Kamil;
Diallo, Mawlouth;
Gaye, Alioune;
Dickson, Laura B.

Publication type:

Article

Identification of common sequence motifs shared exclusively among selectively packed exosomal pathogenic microRNAs during rickettsial infections.

Published in:

Journal of Cellular Physiology, 2023, v. 238, n. 8, p. 1937, doi. 10.1002/jcp.31061

By:

Bei, Jiani;
Qiu, Yuan;
Cockrell, Diane;
Chang, Qing;
Husseinzadeh, Sorosh;
Zhou, Changcheng;
Fang, Xiang;
Bao, Xiaoyong;
Jin, Yang;
Gaitas, Angelo;
Khanipov, Kamil;
Saito, Tais B.;
Gong, Bin

Publication type:

Article

Microbiome Interaction Networks and Community Structure From Laboratory-Reared and Field-Collected Aedes aegypti , Aedes albopictus , and Culex quinquefasciatus Mosquito Vectors.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02160

By:

Hegde, Shivanand;
Khanipov, Kamil;
Albayrak, Levent;
Golovko, George;
Pimenova, Maria;
Saldaña, Miguel A.;
Rojas, Mark M.;
Hornett, Emily A.;
Motl, Greg C.;
Fredregill, Chris L.;
Dennett, James A.;
Debboun, Mustapha;
Fofanov, Yuriy;
Hughes, Grant L.

Publication type:

Article

Secondary Analysis of the NCI-60 Whole Exome Sequencing Data Indicates Significant Presence of Propionibacterium acnes Genomic Material in Leukemia (RPMI-8226) and Central Nervous System (SF-295, SF-539, and SNB-19) Cell Lines.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0127799

By:

Rojas, Mark;
Golovko, Georgiy;
Khanipov, Kamil;
Albayrak, Levent;
Chumakov, Sergei;
Pettitt, B. Montgomery;
Strongin, Alex Y.;
Fofanov, Yuriy

Publication type:

Article

Evaluation of Type I Interferon Treatment in Hospitalized COVID-19 Patients: A Retrospective Cohort Study.

Published in:

Pathogens, 2024, v. 13, n. 7, p. 539, doi. 10.3390/pathogens13070539

By:

Tat, Vivian Y.;
Huang, Pinghan;
Khanipov, Kamil;
Tat, Nathan Y.;
Tseng, Chien-Te Kent;
Golovko, George

Publication type:

Article

TaqMan Assays for Simultaneous Detection of Bacillus anthracis and Bacillus cereus biovar anthracis.

Published in:

Pathogens, 2020, v. 9, n. 12, p. 1074, doi. 10.3390/pathogens9121074

By:

Zincke, Diansy;
Norris, Michael H.;
Cruz, Odalis;
Kurmanov, Berzhan;
McGraw, W. Scott;
Daegling, David J.;
Krigbaum, John;
Hoang, Thi Thu Ha;
Khanipov, Kamil;
Golovko, Georgiy;
Hadfield, Ted;
Blackburn, Jason K.

Publication type:

Article

The ability of human nuclear DNA to cause false positive low-abundance heteroplasmy calls varies across the mitochondrial genome.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3375-x

By:

Albayrak, Levent;
Khanipov, Kamil;
Pimenova, Maria;
Golovko, George;
Rojas, Mark;
Pavlidis, Ioannis;
Chumakov, Sergei;
Aguilar, Gerardo;
Chávez, Arturo;
Widger, William R.;
Fofanov, Yuriy

Publication type:

Article

Small Regulatory RNAs of Rickettsia conorii.

Published in:

Scientific Reports, 2016, p. 36728, doi. 10.1038/srep36728

By:

Narra, Hema P.;
Schroeder, Casey L. C.;
Sahni, Abha;
Rojas, Mark;
Khanipov, Kamil;
Fofanov, Yuriy;
Sahni, Sanjeev K.

Publication type:

Article

Exosomally Targeting microRNA23a Ameliorates Microvascular Endothelial Barrier Dysfunction Following Rickettsial Infection.

Published in:

Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.904679

By:

Zhou, Changcheng;
Bei, Jiani;
Qiu, Yuan;
Chang, Qing;
Nyong, Emmanuel;
Vasilakis, Nikos;
Yang, Jun;
Krishnan, Balaji;
Khanipov, Kamil;
Jin, Yang;
Fang, Xiang;
Gaitas, Angelo;
Gong, Bin

Publication type:

Article

Expression Profiling of Long Noncoding RNA Splice Variants in Human Microvascular Endothelial Cells: Lipopolysaccharide Effects In Vitro.

Published in:

Mediators of Inflammation, 2017, p. 1, doi. 10.1155/2017/3427461

By:

Chowdhury, Imran H.;
Narra, Hema P.;
Sahni, Abha;
Khanipov, Kamil;
Schroeder, Casey L. C.;
Patel, Jignesh;
Fofanov, Yuriy;
Sahni, Sanjeev K.

Publication type:

Article