Works matching AU Kendziorski, Christina

Results: 72

OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data.

Published in:

Bioinformatics, 2016, v. 32, n. 9, p. 1408, doi. 10.1093/bioinformatics/btw004

By:

Ning Leng;
Jeea Choi;
Li-Fang Chu;
Thomson, James A.;
Kendziorski, Christina;
Stewart, Ron

Publication type:

Article

EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.

Published in:

2015

By:

Ning Leng;
Yuan Li;
McIntosh, Brian E.;
Bao Kim Nguyen;
Duffin, Bret;
Tian, Shulan;
Thomson, James A.;
Dewey, Colin N.;
Stewart, Ron;
Kendziorski, Christina

Publication type:

Product Review

MADGiC: a model-based approach for identifying driver genes in cancer.

Published in:

2015

By:

Korthauer, Keegan D.;
Kendziorski, Christina

Publication type:

Case Study

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments.

Published in:

2013

By:

Leng, Ning;
Dawson, John A.;
Thomson, James A.;
Ruotti, Victor;
Rissman, Anna I.;
Smits, Bart M. G.;
Haag, Jill D.;
Gould, Michael N.;
Stewart, Ron M.;
Kendziorski, Christina

Publication type:

Correction Notice

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1035, doi. 10.1093/bioinformatics/btt087

By:

Leng, Ning;
Dawson, John A.;
Thomson, James A.;
Ruotti, Victor;
Rissman, Anna I.;
Smits, Bart M. G.;
Haag, Jill D.;
Gould, Michael N.;
Stewart, Ron M.;
Kendziorski, Christina

Publication type:

Article

R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression.

Published in:

Bioinformatics, 2012, v. 28, n. 14, p. 1939, doi. 10.1093/bioinformatics/bts268

By:

Dawson, John A.;
Ye, Shuyun;
Kendziorski, Christina

Publication type:

Article

Statistical methods for gene set co-expression analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2780, doi. 10.1093/bioinformatics/btp502

By:

Youn Jeong Choi;
Kendziorski, Christina

Publication type:

Article

CB2 improves power of cell detection in droplet-based single-cell RNA sequencing data.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02054-8

By:

Ni, Zijian;
Chen, Shuyang;
Brown, Jared;
Kendziorski, Christina

Publication type:

Article

Correction: Identification of a serum-induced transcriptional signature associated with metastatic cervical cancer.

Published in:

2018

By:

Palatnik, Anna;
Ye, Shuyun;
Kendziorski, Christina;
Iden, Marissa;
Zigman, Jessica S.;
Hessner, Martin J.;
Rader, Janet S.

Publication type:

Correction Notice

PGC-1a at the crossroads of type 2 diabetes.

Published in:

Nature Genetics, 2003, v. 34, n. 3, p. 244, doi. 10.1038/ng0703-244

By:

Attie, Alan D;
Kendziorski, Christina M

Publication type:

Article

Gene expression profiling of aging reveals activation of a p53-mediated transcriptional program.

Published in:

BMC Genomics, 2007, v. 8, p. 80, doi. 10.1186/1471-2164-8-80

By:

Edwards, Michael G;
Anderson, Rozalyn M;
Ming Yuan;
Kendziorski, Christina M;
Weindruch, Richard;
Prolla, Tomas A

Publication type:

Article

Fungal Morphology, Iron Homeostasis, and Lipid Metabolism Regulated by a GATA Transcription Factor in Blastomyces dermatitidis.

Published in:

PLoS Pathogens, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.ppat.1004959

By:

Marty, Amber J.;
Broman, Aimee T.;
Zarnowski, Robert;
Dwyer, Teigan G.;
Bond, Laura M.;
Lounes-Hadj Sahraoui, Anissa;
Fontaine, Joël;
Ntambi, James M.;
Keleş, Sündüz;
Kendziorski, Christina;
Gauthier, Gregory M.

Publication type:

Article

Interspecies chimeric conditions affect the developmental rate of human pluripotent stem cells.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pcbi.1008778

By:

Brown, Jared;
Barry, Christopher;
Schmitz, Matthew T.;
Argus, Cara;
Bolin, Jennifer M.;
Schwartz, Michael P.;
Van Aartsen, Amy;
Steill, John;
Swanson, Scott;
Stewart, Ron;
Thomson, James A.;
Kendziorski, Christina

Publication type:

Article

SpotClean adjusts for spot swapping in spatial transcriptomics data.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30587-y

By:

Ni, Zijian;
Prasad, Aman;
Chen, Shuyang;
Halberg, Richard B.;
Arkin, Lisa M.;
Drolet, Beth A.;
Newton, Michael A.;
Kendziorski, Christina

Publication type:

Article

Comparison of Temporal Transcriptomic Profiles from Immature Lungs of Two Rat Strains Reveals a Viral Response Signature Associated with Chronic Lung Dysfunction.

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0112997

By:

Hines, Elizabeth A.;
Szakaly, Renee J.;
Leng, Ning;
Webster, Anais T.;
Verheyden, Jamie M.;
Lashua, Amber J.;
Kendziorski, Christina;
Rosenthal, Louis A.;
Gern, James E.;
Sorkness, Ronald L.;
Sun, Xin;
Jr.Lemanske, Robert F.

Publication type:

Article

Metabolic Changes in Skin Caused by Scd1 Deficiency: A Focus on Retinol Metabolism.

Published in:

PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019734

By:

Flowers, Matthew T.;
Paton, Chad M.;
O'Byrne, Sheila M.;
Schiesser, Kevin;
Dawson, John A.;
Blaner, William S.;
Kendziorski, Christina;
Ntambi, James M.

Publication type:

Article

Novel immortalized human vocal fold epithelial cell line: In vitro tool for mucosal biology.

Published in:

FASEB Journal, 2021, v. 35, n. 2, p. 1, doi. 10.1096/fj.202001423R

By:

Xia Chen;
Lungova, Vlasta;
Haiyan Zhang;
Mohanty, Chitrasen;
Kendziorski, Christina;
Thibeault, Susan L.

Publication type:

Article

Microglial responses to CSF1 overexpression do not promote the expansion of other glial lineages.

Published in:

2021

By:

De, Ishani;
Maklakova, Vilena;
Litscher, Suzanne;
Boyd, Michelle M.;
Klemm, Lucas C.;
Wang, Ziyue;
Kendziorski, Christina;
Collier, Lara S.

Publication type:

journal article

The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets.

Published in:

PLoS Genetics, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pgen.1006466

By:

Keller, Mark P.;
Paul, Pradyut K.;
Rabaglia, Mary E.;
Stapleton, Donnie S.;
Schueler, Kathryn L.;
Broman, Aimee Teo;
Ye, Shuyun Isabella;
Leng, Ning;
Brandon, Christopher J.;
Neto, Elias Chaibub;
Plaisier, Christopher L.;
Simonett, Shane P.;
Kebede, Melkam A.;
Sheynkman, Gloria M.;
Klein, Mark A.;
Baliga, Nitin S.;
Smith, Lloyd M.;
Broman, Karl W.;
Yandell, Brian S.;
Kendziorski, Christina

Publication type:

Article

A Model-Based Analysis to Infer the Functional Content of a Gene List.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 2, p. 1, doi. 10.2202/1544-6115.1716

By:

Newton, Michael A.;
Qiuling He;
Kendziorski, Christina

Publication type:

Article

Genetic Drivers of Pancreatic Islet Function.

Published in:

Genetics, 2018, v. 209, n. 1, p. 335, doi. 10.1534/genetics.118.300864

By:

Keller, Mark P.;
Gatti, Daniel M.;
Schueler, Kathryn L.;
Rabaglia, Mary E.;
Stapleton, Donnie S.;
Simecek, Petr;
Vincent, Matthew;
Allen, Sadie;
Broman, Aimee Teo;
Bacher, Rhonda;
Kendziorski, Christina;
Broman, Karl W.;
Yandell, Brian S.;
Churchill, Gary A.;
Attie, Alan D.

Publication type:

Article

Statistical Methods for Latent Class Quantitative Trait Loci Mapping.

Published in:

Genetics, 2017, v. 206, n. 3, p. 1309, doi. 10.1534/genetics.117.203885

By:

Shuyun Ye;
Bacher, Rhonda;
Keller, Mark P.;
Attie, Alan D.;
Kendziorski, Christina

Publication type:

Article

The Dissection of Expression Quantitative Trait Locus Hotspots.

Published in:

Genetics, 2016, v. 202, n. 4, p. 1563, doi. 10.1534/genetics.115.183624

By:

Tian, Jianan;
Keller, Mark P.;
Teo Broman, Aimee;
Kendziorski, Christina;
Yandell, Brian S.;
Attie, Alan D.;
Broman, Karl W.

Publication type:

Article

Identification of the Bile Acid Transporter Slco1a6 as a Candidate Gene That Broadly Affects Gene Expression in Mouse Pancreatic Islets.

Published in:

Genetics, 2015, v. 201, n. 3, p. 1253, doi. 10.1534/genetics.115.179432

By:

Tian, Jianan;
Keller, Mark P.;
Oler, Angie T.;
Rabaglia, Mary E.;
Schueler, Kathryn L.;
Stapleton, Donald S.;
Broman, Aimee Teo;
Zhao, Wen;
Kendziorski, Christina;
Yandell, Brian S.;
Hagenbuch, Bruno;
Broman, Karl W.;
Attie, Alan D.

Publication type:

Article

A Statistical Framework for Expression Quantitative Trait Loci Mapping.

Published in:

Genetics, 2007, v. 177, n. 2, p. 761, doi. 10.1534/genetics.107.071407

By:

Meng Chen;
Christina Kendziorski

Publication type:

Article

Spatial transcriptomics in glioblastoma: is knowing the right zip code the key to the next therapeutic breakthrough?

Published in:

Frontiers in Oncology, 2023, p. 1, doi. 10.3389/fonc.2023.1266397

By:

Shireman, Jack M.;
Cheng, Lingxin;
Goel, Amiti;
Garcia, Diogo Moniz;
Quiñones-Hinojosa, Alfredo;
Kendziorski, Christina;
Dey, Mahua

Publication type:

Article

Discordance between histologic and visual assessment of tissue viability in excised burn wound tissue.

Published in:

Wound Repair & Regeneration, 2019, v. 27, n. 2, p. 150, doi. 10.1111/wrr.12692

By:

Karim, Aos S.;
Yan, Amy;
Ocotl, Edgar;
Bennett, Daniel D.;
Wang, Ziyue;
Kendziorski, Christina;
Gibson, Angela L.F.

Publication type:

Article

Identification of a serum-induced transcriptional signature associated with metastatic cervical cancer.

Published in:

PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0181242

By:

Palatnik, Anna;
Ye, Shuyun;
Kendziorski, Christina;
Iden, Marissa;
Zigman, Jessica S.;
Hessner, Martin J.;
Rader, Janet S.

Publication type:

Article

Non-Metastatic Clear Cell Renal Cell Carcinoma Immune Cell Infiltration Heterogeneity and Prognostic Ability in Patients Following Surgery.

Published in:

Cancers, 2024, v. 16, n. 3, p. 478, doi. 10.3390/cancers16030478

By:

Shapiro, Daniel D.;
Lozar, Taja;
Cheng, Lingxin;
Xie, Elliot;
Laklouk, Israa;
Lee, Moon Hee;
Huang, Wei;
Jarrard, David F.;
Allen, Glenn O.;
Hu, Rong;
Kinoshita, Toshi;
Esbona, Karla;
Lambert, Paul F.;
Capitini, Christian M.;
Kendziorski, Christina;
Abel, Edwin Jason

Publication type:

Article

Histone chaperone ASF1B promotes human β -cell proliferation via recruitment of histone H3.3.

Published in:

Cell Cycle, 2016, v. 15, n. 23, p. 3191, doi. 10.1080/15384101.2016.1241914

By:

Paul, Pradyut K.;
Rabaglia, Mary E.;
Wang, Chen-Yu;
Stapleton, Donald S.;
Leng, Ning;
Kendziorski, Christina;
Lewis, Peter W.;
Keller, Mark P.;
Attie, Alan D.

Publication type:

Article

Pathway index models for construction of patient-specific risk profiles.

Published in:

Statistics in Medicine, 2013, v. 32, n. 9, p. 1524, doi. 10.1002/sim.5641

By:

Eng, Kevin H.;
Wang, Sijian;
Bradley, William H.;
Rader, Janet S.;
Kendziorski, Christina

Publication type:

Article

Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 195, doi. 10.1186/1471-2164-15-1066

By:

Christopherson, Melissa R.;
Dawson, John;
Stevenson, David;
Cunningham, Andrew;
Bramhacharya, Shanti;
Weimer, Paul J.;
Kendziorski, Christina;
Suen, Garret

Publication type:

Article

Discovery of structural alterations in solid tumor oligodendroglioma by single molecule analysis.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-505

By:

Ray, Mohana;
Goldstein, Steve;
Shiguo Zhou;
Potamousis, Konstantinos;
Sarkar, Deepayan;
Newton, Michael A.;
Esterberg, Elizabeth;
Kendziorski, Christina;
Bogler, Oliver;
Schwartz, David C.

Publication type:

Article

Gene loci associated with insulin secretion in islets from non-diabetic mice.

Published in:

2019

By:

Keller, Mark P.;
Rabaglia, Mary E.;
Schueler, Kathryn L.;
Stapleton, Donnie S.;
Gatti, Daniel M.;
Vincent, Matthew;
Mitok, Kelly A.;
Ziyue Wang;
Takanao Ishimura;
Simonett, Shane P.;
Emfinger, Christopher H.;
Das, Rahul;
Beck, Tim;
Kendziorski, Christina;
Broman, Karl W.;
Yandell, Brian S.;
Churchill, Gary A.;
Attie, Alan D.;
Wang, Ziyue;
Ishimura, Takanao

Publication type:

journal article

Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress.

Published in:

PLoS Biology, 2017, v. 15, n. 12, p. 1, doi. 10.1371/journal.pbio.2004050

By:

Gasch, Audrey P.;
Yu, Feiqiao Brian;
Hose, James;
Escalante, Leah E.;
Place, Mike;
Bacher, Rhonda;
Kanbar, Jad;
Ciobanu, Doina;
Sandor, Laura;
Grigoriev, Igor V.;
Kendziorski, Christina;
Quake, Stephen R.;
McClean, Megan N.

Publication type:

Article

An efficient method for identifying statistical interactors in gene association networks.

Published in:

Biostatistics, 2009, v. 10, n. 4, p. 706, doi. 10.1093/biostatistics/kxp025

By:

ANDREI, ALINA;
KENDZIORSKI, CHRISTINA

Publication type:

Article

Transcriptomic and proteomic spatial profiling of pediatric and adult diffuse midline glioma H3 K27-Altered.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-73199-w

By:

Damodharan, Sudarshawn;
Shireman, Jack M.;
Xie, Elliot;
Distler, Emily;
Kendziorski, Christina;
Dey, Mahua

Publication type:

Article

Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments.

Published in:

Nature Methods, 2015, v. 12, n. 10, p. 947, doi. 10.1038/nmeth.3549

By:

Leng, Ning;
Chu, Li-Fang;
Barry, Chris;
Li, Yuan;
Choi, Jeea;
Li, Xiaomao;
Jiang, Peng;
Stewart, Ron M;
Thomson, James A;
Kendziorski, Christina

Publication type:

Article

A review of statistical methods for expression quantitative trait loci mapping.

Published in:

Mammalian Genome, 2006, v. 17, n. 6, p. 509, doi. 10.1007/s00335-005-0189-6

By:

Kendziorski, Christina;
Ping Wang

Publication type:

Article

Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 2, p. e12, doi. 10.1093/nar/gkab1071

By:

Bacher, Rhonda;
Chu, Li-Fang;
Argus, Cara;
Bolin, Jennifer M;
Knight, Parker;
Thomson, James A;
Stewart, Ron;
Kendziorski, Christina

Publication type:

Article

Collaborative rewiring of the pluripotency network by chromatin and signalling modulating pathways.

Published in:

Nature Communications, 2015, v. 6, n. 2, p. 6188, doi. 10.1038/ncomms7188

By:

Tran, Khoa A.;
Jackson, Steven A.;
Olufs, Zachariah P.G.;
Zaidan, Nur Zafirah;
Leng, Ning;
Kendziorski, Christina;
Roy, Sushmita;
Sridharan, Rupa

Publication type:

Article

Rejoinder.

Published in:

Journal of the American Statistical Association, 2006, v. 101, n. 476, p. 1338, doi. 10.1198/016214506000000933

By:

Ming Yuan;
Kendziorski, Christina

Publication type:

Article

Hidden Markov Models for Microarray Time Course Data in Multiple Biological Conditions.

Published in:

Journal of the American Statistical Association, 2006, v. 101, n. 476, p. 1323, doi. 10.1198/016214505000000394

By:

Ming Yuan;
Kendziorski, Christina

Publication type:

Article

Quantitative Trait Loci Associated with Susceptibility to Bladder and Kidney Infections Induced by Escherichia coli in Female C3H/HeJ Mice.

Published in:

Journal of Infectious Diseases, 2009, v. 198, n. 3, p. 355, doi. 10.1086/595987

By:

Hopkins, Walter J.;
Elkahwaji, Johny;
Kendziorski, Christina;
Moser, Amy R.;
Briggs, Paulette M.;
Suhs, Kaleigh A.

Publication type:

Article

A PtdIns4,5P<sub>2</sub>-regulated nuclear poly(A) polymerase controls expression of select mRNAs.

Published in:

Nature, 2008, v. 451, n. 7181, p. 1013, doi. 10.1038/nature06666

By:

Mellman, David L.;
Gonzales, Michael L.;
Chunhua Song;
Barlow, Christy A.;
Ping Wang;
Kendziorski, Christina;
Anderson, Richard A.

Publication type:

Article

Genetic Loci Controlling Breast Cancer Susceptibility in the Wistar-Kyoto Rat.

Published in:

Genetics, 2001, v. 157, n. 1, p. 331, doi. 10.1093/genetics/157.1.331

By:

Hong Lan;
Kendziorski, Christina M.

Publication type:

Article

Human induced pluripotent stem cell-derived vocal fold mucosa mimics development and responses to smoke exposure.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12069-w

By:

Lungova, Vlasta;
Chen, Xia;
Wang, Ziyue;
Kendziorski, Christina;
Thibeault, Susan L.

Publication type:

Article

Disease progression and outcomes in chronic kidney disease and renal transplantation.

Published in:

Kidney International, 2003, v. 64, n. 5, p. 1800, doi. 10.1046/j.1523-1755.2003.00270.x

By:

Djamali, Arjang;
Kendziorski, Christina;
Brazy, Peter C.;
Becker, Bryan N.

Publication type:

Article

An Empirical Bayesian Approach for Identifying Differential Coexpression in High-Throughput Experiments.

Published in:

Biometrics, 2012, v. 68, n. 2, p. 455, doi. 10.1111/j.1541-0420.2011.01688.x

By:

Dawson, John A.;
Kendziorski, Christina

Publication type:

Article

A Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification.

Published in:

Biometrics, 2006, v. 62, n. 4, p. 1089, doi. 10.1111/j.1541-0420.2006.00611.x

By:

Ming Yuan;
Kendziorski, Christina

Publication type:

Article