Works matching AU Kelso, Janet

Results: 48

OBML -- Ontologies in Biomedicine and Life Sciences.

Published in:

2011

By:

Herre, Heinrich;
Hoehndorf, Robert;
Kelso, Janet;
Loebe, Frank;
Schulz, Stefan

Publication type:

Proceeding

Applying the functional abnormality ontology pattern to anatomical functions.

Published in:

Journal of Biomedical Semantics, 2010, v. 1, n. 1, p. 1, doi. 10.1186/2041-1480-1-4

By:

Hoehndorf, Robert;
Ngomo, Axel-Cyrille Ngonga;
Kelso, Janet

Publication type:

Article

Neandertal introgression partitions the genetic landscape of neuropsychiatric disorders and associated behavioral phenotypes.

Published in:

Translational Psychiatry, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41398-022-02196-2

By:

Dannemann, Michael;
Milaneschi, Yuri;
Yermakovich, Danat;
Stiglbauer, Victoria;
Kariis, Hanna Maria;
Krebs, Kristi;
Friese, Manuel A.;
Otte, Christian;
Estonian Biobank Research Team;
Esko, Tõnu;
Metspalu, Andres;
Milani, Lili;
Mägi, Reedik;
Nelis, Mari;
Lehto, Kelli;
Penninx, Brenda W. J. H.;
Kelso, Janet;
Gold, Stefan M.

Publication type:

Article

Integration of text- and data-mining using ontologies successfully selects disease gene candidates.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 5, p. 1544, doi. 10.1093/nar/gki296

By:

Tiffin, Nicki;
Kelso, Janet F.;
Powell, Alan R.;
Pan, Hong;
Bajic, Vladimir B.;
Hide, Winston A.

Publication type:

Article

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d567

By:

Tanino, Motohiko;
Debily, Marie-Anne;
Tamura, Takuro;
Hishiki, Teruyoshi;
Ogasawara, Osamu;
Murakawa, Katsuji;
Kawamoto, Shoko;
Itoh, Kouichi;
Watanabe, Shinya;
de Souza, Sandro José;
Imbeaud, Sandrine;
Graudens, Esther;
Eveno, Eric;
Hilton, Phillip;
Sudo, Yukio;
Kelso, Janet;
Ikeo, Kazuho;
Imanishi, Tadashi;
Gojobori, Takashi;
Auffray, Charles

Publication type:

Article

Resolving the source of branch length variation in the Y chromosome phylogeny.

Published in:

Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-024-03468-4

By:

Swiel, Yaniv;
Kelso, Janet;
Peyrégne, Stéphane

Publication type:

Article

Functional implications of Neandertal introgression in modern humans.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1181-7

By:

Dannemann, Michael;
Prüfer, Kay;
Kelso, Janet

Publication type:

Article

Functionality of Intergenic Transcription: An Evolutionary Comparison.

Published in:

PLoS Genetics, 2006, v. 3, n. 4, p. 1590, doi. 10.1371/journal.pgen.0020171

By:

Khaitovich, Philipp;
Kelso, Janet;
Franz, Henriette;
Visagie, Johann;
Giger, Thomas;
Joerchel, Sabrina;
Petzold, Ekkehard;
Green, Richard E.;
Lachmann, Michael;
Pääbo, Svante

Publication type:

Article

Immune Gene Diversity in Archaic and Present-day Humans.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 1, p. 232, doi. 10.1093/gbe/evy271

By:

Reher, David;
Key, Felix M;
Andrés, Aida M;
Kelso, Janet

Publication type:

Article

Genetic Evidence of Human Adaptation to a Cooked Diet.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1091, doi. 10.1093/gbe/evw059

By:

Carmody, Rachel N.;
Dannemann, Michael;
Briggs, Adrian W.;
Nickel, Birgit;
Groopman, Emily E.;
Wrangham, Richard W.;
Kelso, Janet

Publication type:

Article

Transcription Factors Are Targeted by Differentially Expressed miRNAs in Primates.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 552, doi. 10.1093/gbe/evs033

By:

Dannemann, Michael;
Prüfer, Kay;
Lizano, Esther;
Nickel, Birgit;
Burbano, Hernán A.;
Kelso, Janet

Publication type:

Article

Detection of Neanderthal Adaptively Introgressed Genetic Variants That Modulate Reporter Gene Expression in Human Immune Cells.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab304

By:

Jagoda, Evelyn;
Xue, James R;
Reilly, Steven K;
Dannemann, Michael;
Racimo, Fernando;
Huerta-Sanchez, Emilia;
Sankararaman, Sriram;
Kelso, Janet;
Pagani, Luca;
Sabeti, Pardis C;
Capellini, Terence D

Publication type:

Article

The Neandertal Progesterone Receptor.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 9, p. 2655, doi. 10.1093/molbev/msaa119

By:

Zeberg, Hugo;
Kelso, Janet;
Pääbo, Svante

Publication type:

Article

A Recent Evolutionary Change Affects a Regulatory Element in the Human FOXP2 Gene.

Published in:

Molecular Biology & Evolution, 2013, v. 30, n. 4, p. 844, doi. 10.1093/molbev/mss271

By:

Maricic, Tomislav;
Günther, Viola;
Georgiev, Oleg;
Gehre, Sabine;
Ćurlin, Marija;
Schreiweis, Christiane;
Naumann, Ronald;
Burbano, Hernán A.;
Meyer, Matthias;
Lalueza-Fox, Carles;
de la Rasilla, Marco;
Rosas, Antonio;
Gajović, Srećko;
Kelso, Janet;
Enard, Wolfgang;
Schaffner, Walter;
Pääbo, Svante

Publication type:

Article

Reviewer-coerced citation: case report, update on journal policy and suggestions for future prevention.

Published in:

Bioinformatics, 2019, v. 35, n. 18, p. 3217, doi. 10.1093/bioinformatics/btz071

By:

Wren, Jonathan D;
Valencia, Alfonso;
Kelso, Janet

Publication type:

Article

admixr—R package for reproducible analyses using ADMIXTOOLS.

Published in:

Bioinformatics, 2019, v. 35, n. 17, p. 3194, doi. 10.1093/bioinformatics/btz030

By:

Petr, Martin;
Vernot, Benjamin;
Kelso, Janet

Publication type:

Article

ABAEnrichment: an R package to test for gene set expression enrichment in the adult and developing human brain.

Published in:

2016

By:

Grote, Steffi;
Prüfer, Kay;
Kelso, Janet;
Dannemann, Michael

Publication type:

Product Review

deML: robust demultiplexing of Illumina sequences using a likelihood-based approach.

Published in:

Bioinformatics, 2015, v. 31, n. 5, p. 770, doi. 10.1093/bioinformatics/btu719

By:

Renaud, Gabriel;
Stenzel, Udo;
Maricic, Tomislav;
Wiebe, Victor;
Kelso, Janet

Publication type:

Article

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1208, doi. 10.1093/bioinformatics/btt117

By:

Renaud, Gabriel;
Kircher, Martin;
Stenzel, Udo;
Kelso, Janet

Publication type:

Article

Impact of ontology evolution on functional analyses.

Published in:

Bioinformatics, 2012, v. 28, n. 20, p. 2671, doi. 10.1093/bioinformatics/bts498

By:

Groß, Anika;
Hartung, Michael;
Prüfer, Kay;
Kelso, Janet;
Rahm, Erhard

Publication type:

Article

Paving the future: finding suitable ISMB venues.

Published in:

Bioinformatics, 2012, v. 28, n. 19, p. 2556, doi. 10.1093/bioinformatics/bts420

By:

Rost, Burkhard;
Gaasterland, Terry;
Lengauer, Thomas;
Linial, Michal;
Markel, Scott;
Morrison McKay, B.J.;
Schneider, Reinhard;
Horton, Paul;
Kelso, Janet

Publication type:

Article

PatMaN: rapid alignment of short sequences to large databases.

Published in:

Bioinformatics, 2008, v. 24, n. 13, p. 1530, doi. 10.1093/bioinformatics/btn223

By:

Kay Prüfer;
Udo Stenzel;
Michael Dannemann;
Richard E. Green;
Michael Lachmann;
Janet Kelso

Publication type:

Article

High-throughput DNA sequencing -- concepts and limitations.

Published in:

BioEssays, 2010, v. 32, n. 6, p. 524, doi. 10.1002/bies.200900181

By:

Kircher, Martin;
Kelso, Janet

Publication type:

Article

Allele-specific transcript isoforms in human

Published in:

FEBS Letters, 2004, v. 577, n. 1/2, p. 233, doi. 10.1016/j.febslet.2004.10.018

By:

Nembaware, Victoria;
Wolfe, Kenneth H.;
Bettoni, Fabiana;
Kelso, Janet;
Seoighe, Cathal

Publication type:

Article

Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans.

Published in:

Nature Communications, 2014, v. 5, n. 4, p. 3584, doi. 10.1038/ncomms4584

By:

Khrameeva, Ekaterina E.;
Bozek, Katarzyna;
He, Liu;
Yan, Zheng;
Jiang, Xi;
Wei, Yuning;
Tang, Kun;
Gelfand, Mikhail S.;
Prufer, Kay;
Kelso, Janet;
Paabo, Svante;
Giavalisco, Patrick;
Lachmann, Michael;
Khaitovich, Philipp

Publication type:

Article

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S1

By:

Ranganathan, Shoba;
Schönbach, Christian;
Kelso, Janet;
Rost, Burkhard;
Nathan, Sheila;
Tan, Tin Wee

Publication type:

Article

Relations as patterns: bridging the gap betweenOBO and OWL.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 441, doi. 10.1186/1471-2105-11-441

By:

Hoehndorf, Robert;
Oellrich, Anika;
Dumontier, Michel;
Kelso, Janet;
Rebholz-Schuhmann, Dietrich;
Herre, Heinrich

Publication type:

Article

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S5-S5

By:

Hoehndorf, Robert;
Bacher, Joshua;
Backhaus, Michael;
Gregorio Jr., Sergio E.;
Loebe, Frank;
Prüfer, Kay;
Uciteli, Alexandr;
Visagie, Johann;
Herre, Heinrich;
Kelso, Janet

Publication type:

Article

Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 377, doi. 10.1186/1471-2105-8-377

By:

Hoehndorf, Robert;
Loebe, Frank;
Kelso, Janet;
Herre, Heinrich

Publication type:

Article

ISCB Computational Biology Wikipedia Competition.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003242

By:

Bateman, Alex;
Kelso, Janet;
Mietchen, Daniel;
Macintyre, Geoff;
Di Domenico, Tomás;
Abeel, Thomas;
Logan, Darren W.;
Radivojac, Predrag;
Rost, Burkhard

Publication type:

Article

Identifying genes underlying skin pigmentation differences among human populations.

Published in:

Human Genetics, 2006, v. 120, n. 5, p. 613, doi. 10.1007/s00439-006-0256-4

By:

Myles, Sean;
Somel, Mehmet;
Kun Tang;
Kelso, Janet;
Stoneking, Mark

Publication type:

Article

Population transcriptomics of life-history variation in the genus Salmo.

Published in:

Molecular Ecology, 2008, v. 17, n. 13, p. 3095, doi. 10.1111/j.1365-294X.2008.03820.x

By:

GIGER, THOMAS;
EXCOFFIER, LAURENT;
AMSTUTZ, URSULA;
DAY, PHILIP J. R.;
CHAMPIGNEULLE, ALEXIS;
HANSEN, MICHAEL M.;
KELSO, JANET;
LARGIADÈR, CARLO R.

Publication type:

Article

leeHom: adaptor trimming and merging for Illumina sequencing reads.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 18, p. e141, doi. 10.1093/nar/gku699

By:

Renaud, Gabriel;
Stenzel, Udo;
Kelso, Janet

Publication type:

Article

Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07483-5

By:

Lamnidis, Thiseas C.;
Majander, Kerttu;
Jeong, Choongwon;
Salmela, Elina;
Wessman, Anna;
Moiseyev, Vyacheslav;
Khartanovich, Valery;
Balanovsky, Oleg;
Ongyerth, Matthias;
Weihmann, Antje;
Sajantila, Antti;
Kelso, Janet;
Pääbo, Svante;
Onkamo, Päivi;
Haak, Wolfgang;
Krause, Johannes;
Schiffels, Stephan

Publication type:

Article

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0776-0

By:

Renaud, Gabriel;
Slon, Viviane;
Duggan, Ana T.;
Kelso, Janet

Publication type:

Article

Kiwi genome provides insights into evolution of a nocturnal lifestyle.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 147, doi. 10.1186/s13059-015-0711-4

By:

Le Duc, Diana;
Renaud, Gabriel;
Krishnan, Arunkumar;
Almén, Markus Sällman;
Huynen, Leon;
Prohaska, Sonja J.;
Ongyerth, Matthias;
Bitarello, Bárbara D.;
Schiöth, Helgi B.;
Hofreiter, Michael;
Stadler, Peter F.;
Prüfer, Kay;
Lambert, David;
Kelso, Janet;
Schöneberg, Torsten

Publication type:

Article

Deep proteome and transcriptome mapping of a human cancer cell line.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.81

By:

Nagaraj, Nagarjuna;
Wisniewski, Jacek R;
Geiger, Tamar;
Cox, Juergen;
Kircher, Martin;
Kelso, Janet;
Pääbo, Svante;
Mann, Matthias

Publication type:

Article

The evolutionary history of human spindle genes includes back-and-forth gene flow with Neandertals.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.75464

By:

Peyrégne, Stéphane;
Kelso, Janet;
Peter, Benjamin M.;
Pääbo, Svante

Publication type:

Article

High-throughput sequencing of the melanoma genome.

Published in:

Experimental Dermatology, 2013, v. 22, n. 1, p. 10, doi. 10.1111/exd.12054

By:

Kunz, Manfred;
Dannemann, Michael;
Kelso, Janet

Publication type:

Article

DATABASE: A new forum for biological databases and curation.

Published in:

2009

By:

Landsman, David;
Gentleman, Robert;
Kelso, Janet;
Ouellette, B. F. Francis

Publication type:

Editorial

Lineage-Specific Changes in Biomarkers in Great Apes and Humans.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0134548

By:

Ronke, Claudius;
Dannemann, Michael;
Halbwax, Michel;
Fischer, Anne;
Helmschrodt, Christin;
Brügel, Mathias;
André, Claudine;
Atencia, Rebeca;
Mugisha, Lawrence;
Scholz, Markus;
Ceglarek, Uta;
Thiery, Joachim;
Pääbo, Svante;
Prüfer, Kay;
Kelso, Janet

Publication type:

Article

Analysis of Human Accelerated DNA Regions Using Archaic Hominin Genomes.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032877

By:

Burbano, Hernán A.;
Green, Richard E.;
Maricic, Tomislav;
Lalueza-Fox, Carles;
La Rasilla, Marco de;
Rosas, Antonio;
Kelso, Janet;
Pollard, Katherine S.;
Lachmann, Michael;
Pääbo, Svante

Publication type:

Article

Statistical Tests for Associations between Two Directed Acyclic Graphs.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0010996

By:

Hoehndorf, Robert;
Ngonga Ngomo, Axel-Cyrille;
Dannemann, Michael;
Kelso, Janet

Publication type:

Article

The genomic landscape of Neanderthal ancestry in present-day humans.

Published in:

Nature, 2014, v. 507, n. 7492, p. 354, doi. 10.1038/nature12961

By:

Sankararaman, Sriram;
Mallick, Swapan;
Dannemann, Michael;
Prüfer, Kay;
Kelso, Janet;
Pääbo, Svante;
Patterson, Nick;
Reich, David

Publication type:

Article

Pleistocene chronology and history of hominins and fauna at Denisova Cave.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60140-6

By:

Jacobs, Zenobia;
Zavala, Elena I.;
Li, Bo;
O'Gorman, Kieran;
Shunkov, Michael V.;
Kozlikin, Maxim B.;
Derevianko, Anatoly P.;
Uliyanov, Vladimir A.;
Goldberg, Paul;
Agadjanian, Alexander K.;
Vasiliev, Sergei K.;
Brink, Frank;
Peyrégne, Stéphane;
Slon, Viviane;
Pääbo, Svante;
Kelso, Janet;
Meyer, Matthias;
Roberts, Richard G.

Publication type:

Article

Transcription Factors Are Targeted by Differentially Expressed miRNAs in Primates.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 4, p. 552, doi. 10.1093/gbe/evs033

By:

Dannemann, Michael;
Prüfer, Kay;
Lizano, Esther;
Nickel, Birgit;
Burbano, Hernán A.;
Kelso, Janet

Publication type:

Article

An early modern human from Romania with a recent Neanderthal ancestor.

Published in:

Nature, 2015, v. 524, n. 7564, p. 216, doi. 10.1038/nature14558

By:

Fu, Qiaomei;
Hajdinjak, Mateja;
Moldovan, Oana Teodora;
Constantin, Silviu;
Mallick, Swapan;
Skoglund, Pontus;
Patterson, Nick;
Rohland, Nadin;
Lazaridis, Iosif;
Nickel, Birgit;
Viola, Bence;
Prüfer, Kay;
Meyer, Matthias;
Kelso, Janet;
Reich, David;
Pääbo, Svante

Publication type:

Article

InCoB celebrates its tenth anniversary as first joint conference with ISCB-Asia.

Published in:

BMC Genomics, 2011, v. 12, n. Suppl 3, p. 1, doi. 10.1186/1471-2164-12-S3-S1

By:

Schönbach, Christian;
Tin Wee Tan;
Kelso, Janet;
Rost, Burkhard;
Nathan, Sheila;
Ranganathan, Shoba

Publication type:

Article