Found: 66
Select item for more details and to access through your institution.
An empirical Bayes test for allelic-imbalance detection in ChIP-seq.
- Published in:
- 2018
- By:
- Publication type:
- journal article
Residual-based tree-structured survival analysis.
- Published in:
- 2002
- By:
- Publication type:
- journal article
Mixture models with multiple levels, with application to the analysis of multifactor gene expression data.
- Published in:
- 2008
- By:
- Publication type:
- journal article
Mixture models with multiple levels, with application to the analysis of multifactor gene expression data.
- Published in:
- Biostatistics, 2008, v. 9, n. 3, p. 540, doi. 10.1093/biostatistics/kxm051
- By:
- Publication type:
- Article
Integrating quantitative information from ChIP-chip experiments into motif finding.
- Published in:
- Biostatistics, 2008, v. 9, n. 1, p. 51, doi. 10.1093/biostatistics/kxm014
- By:
- Publication type:
- Article
Whole genome methylation sequencing in blood identifies extensive differential DNA methylation in late‐onset dementia due to Alzheimer's disease.
- Published in:
- Alzheimer's & Dementia: The Journal of the Alzheimer's Association, 2024, v. 20, n. 2, p. 1050, doi. 10.1002/alz.13514
- By:
- Publication type:
- Article
Systematic evaluation of the impact of ChIP-seq read designs on genome coverage, peak identification, and allele-specific binding detection.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-0957-1
- By:
- Publication type:
- Article
Cis-element mutated in GATA2-dependent immunodeficiency governs hematopoiesis and vascular integrity.
- Published in:
- Journal of Clinical Investigation, 2012, v. 122, n. 10, p. 1, doi. 10.1172/JCI61623
- By:
- Publication type:
- Article
Differential Sox10 genomic occupancy in myelinating glia.
- Published in:
- Glia, 2015, v. 63, n. 11, p. 1897, doi. 10.1002/glia.22855
- By:
- Publication type:
- Article
Expression Quantitative Trait Loci Mapping With Multivariate Sparse Partial Least Squares Regression.
- Published in:
- Genetics, 2009, v. 182, n. 1, p. 79, doi. 10.1534/genetics.109.100362
- By:
- Publication type:
- Article
Generative modeling of multi-mapping reads with mHi-C advances analysis of Hi-C studies.
- Published in:
- eLife, 2019, p. 1, doi. 10.7554/eLife.38070.001
- By:
- Publication type:
- Article
Regulatory Architecture of the RCA Gene Cluster Captures an Intragenic TAD Boundary, CTCF-Mediated Chromatin Looping and a Long-Range Intergenic Enhancer.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.901747
- By:
- Publication type:
- Article
Data exploration, quality control and statistical analysis of ChIP-exo/nexus experiments.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 15, p. 1, doi. 10.1093/nar/gkx594
- By:
- Publication type:
- Article
Genome-wide analysis of EGR2/SOX10 binding in myelinating peripheral nerve.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 14, p. 6449, doi. 10.1093/nar/gks313
- By:
- Publication type:
- Article
CSI-Tree: a regression tree approach for modeling binding properties of DNA-binding molecules based on cognate site identification (CSI) data.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 10, p. 3171
- By:
- Publication type:
- Article
A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. 9, p. 2926, doi. 10.1093/nar/gkn133
- By:
- Publication type:
- Article
PKM2‐TMEM33 axis regulates lipid homeostasis in cancer cells by controlling SCAP stability.
- Published in:
- EMBO Journal, 2021, v. 40, n. 22, p. 1, doi. 10.15252/embj.2021108065
- By:
- Publication type:
- Article
Sparse Partial Least Squares Classification for High Dimensional Data.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2010, v. 9, n. 1, p. 1, doi. 10.2202/1544-6115.1492
- By:
- Publication type:
- Article
A Non-Homogeneous Hidden-State Model on First Order Differences for Automatic Detection of Nucleosome Positions.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2009, v. 8, n. 1, p. 1, doi. 10.2202/1544-6115.1454
- By:
- Publication type:
- Article
Asymptotic Optimality of Likelihood-Based Cross-Validation.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2004, v. 3, n. 1, p. 1, doi. 10.2202/1544-6115.1036
- By:
- Publication type:
- Article
Supervised Detection of Conserved Motifs in DNA Sequences with Cosmo.
- Published in:
- Statistical Applications in Genetics & Molecular Biology, 2007, v. 6, n. 1, p. 1, doi. 10.2202/1544-6115.1260
- By:
- Publication type:
- Article
Chemical-genomic dissection of the CTD code.
- Published in:
- Nature Structural & Molecular Biology, 2010, v. 17, n. 9, p. 1154, doi. 10.1038/nsmb.1900
- By:
- Publication type:
- Article
Integrative annotation scores of variants for impact on RNA binding protein activities.
- Published in:
- Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae181
- By:
- Publication type:
- Article
MuDCoD: multi-subject community detection in personalized dynamic gene networks from single-cell RNA sequencing.
- Published in:
- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad592
- By:
- Publication type:
- Article
AdaLiftOver: high-resolution identification of orthologous regulatory elements with Adaptive liftOver.
- Published in:
- Bioinformatics, 2023, v. 39, n. 4, p. 1, doi. 10.1093/bioinformatics/btad149
- By:
- Publication type:
- Article
scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data.
- Published in:
- Bioinformatics, 2022, v. 38, n. 14, p. 3642, doi. 10.1093/bioinformatics/btac372
- By:
- Publication type:
- Article
Sparse partial least squares regression for simultaneous dimension reduction and variable selection.
- Published in:
- Journal of the Royal Statistical Society: Series B (Statistical Methodology), 2010, v. 72, n. 1, p. 3, doi. 10.1111/j.1467-9868.2009.00723.x
- By:
- Publication type:
- Article
Recurrent events analysis in the presence of time-dependent covariates and dependent censoring.
- Published in:
- Journal of the Royal Statistical Society: Series B (Statistical Methodology), 2004, v. 66, n. 1, p. 239, doi. 10.1111/j.1467-9868.2004.00442.x
- By:
- Publication type:
- Article
INFIMA leverages multi-omics model organism data to identify effector genes of human GWAS variants.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02450-8
- By:
- Publication type:
- Article
In Silico Pooling of ChIP-seq Control Experiments.
- Published in:
- PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0109691
- By:
- Publication type:
- Article
Identification of Estrogen Receptor Dimer Selective Ligands Reveals Growth-Inhibitory Effects on Cells That Co-Express ERα and ERβ.
- Published in:
- PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0030993
- By:
- Publication type:
- Article
Mixture Modeling for Genome-Wide Localization of Transcription Factors.
- Published in:
- Biometrics, 2007, v. 63, n. 1, p. 10, doi. 10.1111/j.1541-0420.2005.00659.x
- By:
- Publication type:
- Article
Transcriptome-wide transmission disequilibrium analysis identifies novel risk genes for autism spectrum disorder.
- Published in:
- PLoS Genetics, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.pgen.1009309
- By:
- Publication type:
- Article
GATA factor-regulated solute carrier ensemble reveals a nucleoside transporter-dependent differentiation mechanism.
- Published in:
- PLoS Genetics, 2020, v. 16, n. 12, p. 1, doi. 10.1371/journal.pgen.1009286
- By:
- Publication type:
- Article
Regulation of WNT Signaling by VSX2 During Optic Vesicle Patterning in Human Induced Pluripotent Stem Cells.
- Published in:
- Stem Cells, 2016, v. 34, n. 11, p. 2625, doi. 10.1002/stem.2414
- By:
- Publication type:
- Article
Perm-seq: Mapping Protein-DNA Interactions in Segmental Duplication and Highly Repetitive Regions of Genomes with Prior-Enhanced Read Mapping.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004491
- By:
- Publication type:
- Article
dPeak: High Resolution Identification of Transcription Factor Binding Sites from PET and SET ChIP-Seq Data.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003246
- By:
- Publication type:
- Article
Discovering Transcription Factor Binding Sites in Highly Repetitive Regions of Genomes with Multi-Read Analysis of ChIP-Seq Data.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.pcbi.1002111
- By:
- Publication type:
- Article
Single-nucleotide human disease mutation inactivates a blood-regenerative GATA2 enhancer.
- Published in:
- 2019
- By:
- Publication type:
- journal article
The SWI/SNF-Related, Matrix Associated, Actin-Dependent Regulator of Chromatin A4 Core Complex Represses Respiratory Syncytial Virus-Induced Syncytia Formation and Subepithelial Myofibroblast Transition.
- Published in:
- Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.633654
- By:
- Publication type:
- Article
Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02774-z
- By:
- Publication type:
- Article
jMOSAiCS: joint analysis of multiple ChIP-seq datasets.
- Published in:
- Genome Biology, 2013, v. 14, n. 4, p. 1, doi. 10.1186/gb-2013-14-4-r38
- By:
- Publication type:
- Article
Locus-wide identification of Egr2/Krox20 regulatory targets in myelin genes.
- Published in:
- Journal of Neurochemistry, 2010, v. 115, n. 6, p. 1409, doi. 10.1111/j.1471-4159.2010.07045.x
- By:
- Publication type:
- Article
Fungal Morphology, Iron Homeostasis, and Lipid Metabolism Regulated by a GATA Transcription Factor in Blastomyces dermatitidis.
- Published in:
- PLoS Pathogens, 2015, v. 11, n. 6, p. 1, doi. 10.1371/journal.ppat.1004959
- By:
- Publication type:
- Article
A Phylogenetic Mixture Model for the Evolution of Gene Expression.
- Published in:
- Molecular Biology & Evolution, 2009, v. 26, n. 10, p. 2363, doi. 10.1093/molbev/msp149
- By:
- Publication type:
- Article
Genome-wide disruption of 5-hydroxymethylcytosine in a mouse model of autism.
- Published in:
- Human Molecular Genetics, 2015, v. 24, n. 24, p. 7121, doi. 10.1093/hmg/ddv411
- By:
- Publication type:
- Article
Distal enhancers upstream of the Charcot-Marie-Tooth type 1A disease gene PMP22.
- Published in:
- Human Molecular Genetics, 2012, v. 21, n. 7, p. 1581, doi. 10.1093/hmg/ddr595
- By:
- Publication type:
- Article
CTCF loss mediates unique DNA hypermethylation landscapes in human cancers.
- Published in:
- Clinical Epigenetics, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13148-020-00869-7
- By:
- Publication type:
- Article
Regulatory motif finding by logic regression.
- Published in:
- Bioinformatics, 2004, v. 20, n. 16, p. 2799, doi. 10.1093/bioinformatics/bth333
- By:
- Publication type:
- Article
Identification of regulatory elements using a feature selection method.
- Published in:
- Bioinformatics, 2002, v. 18, n. 9, p. 1167, doi. 10.1093/bioinformatics/18.9.1167
- By:
- Publication type:
- Article