Works by Keeling, Patrick J

Results: 192

Divergent Plastid Genomes in the Deepest-Branching Apicomplexan Parasites Open Access.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 6, p. 1, doi. 10.1093/gbe/evaf117

By:

Lax, Gordon;
Kwong, Waldan K;
Na, Ina;
Jacko-Reynolds, Victoria K L;
Trznadel, Morelia;
House, Chloe S E;
Mathur, Varsha;
Wakeman, Kevin C;
Keeling, Patrick J

Publication type:

Article

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing.

Published in:

PLoS Biology, 2014, v. 12, n. 6, p. 1, doi. 10.1371/journal.pbio.1001889

By:

Keeling, Patrick J.;
Burki, Fabien;
Wilcox, Heather M.;
Allam, Bassem;
Allen, Eric E.;
Amaral-Zettler, Linda A.;
Armbrust, E. Virginia;
Archibald, John M.;
Bharti, Arvind K.;
Bell, Callum J.;
Beszteri, Bank;
Bidle, Kay D.;
Cameron, Connor T.;
Campbell, Lisa;
Caron, David A.;
Cattolico, Rose Ann;
Collier, Jackie L.;
Coyne, Kathryn;
Davy, Simon K.;
Deschamps, Phillipe

Publication type:

Article

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

Published in:

PLoS Biology, 2012, v. 10, n. 11, p. 1, doi. 10.1371/journal.pbio.1001419

By:

Pawlowski, Jan;
Audic, Stéphane;
Adl, Sina;
Bass, David;
Belbahri, Lassaâd;
Berney, Cédric;
Bowser, Samuel S.;
Cepicka, Ivan;
Decelle, Johan;
Dunthorn, Micah;
Fiore-Donno, Anna Maria;
Gile, Gillian H.;
Holzmann, Maria;
Jahn, Regine;
Jirků, Miloslav;
Keeling, Patrick J.;
Kostka, Martin;
Kudryavtsev, Alexander;
Lara, Enrique;
Lukeš, Julius

Publication type:

Article

The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 1, p. 54, doi. 10.1093/molbev/msl129

By:

Rogers, Matthew B.;
Gilson, Paul R.;
Su, Vanessa;
McFadden, Geoffrey I.;
Keeling, Patrick J.

Publication type:

Article

Nucleus-to-Nucleus Gene Transfer and Protein Retargeting into a Remnant Cytoplasm of Cryptophytes and Diatoms.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 12, p. 2413, doi. 10.1093/molbev/msl113

By:

Gould, Sven B.;
Sommer, Maik S.;
Kroth, Peter G.;
Gile, Gillian H.;
Keeling, Patrick J.;
Maier, Uwe-G.

Publication type:

Article

Lateral Gene Transfer of a Multigene Region from Cyanobacteria to Dinoflagellates Resulting in a Novel Plastid-Targeted Fusion Protein.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 7, p. 1437, doi. 10.1093/molbev/msl008

By:

Waller, Ross F.;
Slamovits, Claudio H.;
Keeling, Patrick J.

Publication type:

Article

Nucleus-Encoded, Plastid-Targeted Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) Indicates a Single Origin for Chromalveolate Plastids.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 10, p. 1730, doi. 10.1093/molbev/msg195

By:

Harper, James T.;
Keeling, Patrick J.

Publication type:

Article

A Novel Polyubiquitin Structure in Cercozoa and Foraminifera: Evidence for a New Eukaryotic Supergroup.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 1, p. 62, doi. 10.1093/molbev/msg006

By:

Archibald, John M.;
Longet, David;
Pawlowski, Jan;
Keeling, Patrick J.

Publication type:

Article

Foraminifera and Cercozoa Are Related in Actin Phylogeny: Two Orphans Find a Home?

Published in:

Molecular Biology & Evolution, 2001, v. 18, n. 8, p. 1551, doi. 10.1093/oxfordjournals.molbev.a003941

By:

Keeling, Patrick J.

Publication type:

Article

Nuclear-Encoded, Plastid-Targeted Genes Suggest a Single Common Origin for Apicomplexan and Dinoflagellate Plastids.

Published in:

Molecular Biology & Evolution, 2001, v. 18, n. 3, p. 418, doi. 10.1093/oxfordjournals.molbev.a003818

By:

Fast, Naomi M.;
Kissinger, Jessica C.;
Roos, David S.;
Keeling, Patrick J.

Publication type:

Article

Lateral Gene Transfer and Metabolic Adaptation in the Human Parasite Trichomonas vaginalis.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 11, p. 1769, doi. 10.1093/oxfordjournals.molbev.a026275

By:

de Koning, Audrey P.;
Brinkman, Fiona S. L.;
Jones, Steven J. M.;
Keeling, Patrick J.

Publication type:

Article

Symbiotic Origin of a Novel Actin Gene in the Cryptophyte Pyrenomonas helgolandii.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 11, p. 1731, doi. 10.1093/oxfordjournals.molbev.a026271

By:

Stibitz, Thomas B.;
Keeling, Patrick J.;
Bhattacharya, Debashish

Publication type:

Article

Evidence from Beta-Tubulin Phylogeny that Microsporidia Evolved from Within the Fungi.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 1, p. 23, doi. 10.1093/oxfordjournals.molbev.a026235

By:

Keeling, Patrick J.;
Luker, Melissa A.;
Palmer, Jeffrey D.

Publication type:

Article

The Secondary Endosymbiont of the Cryptomonad Guillardia theta Contains Alpha-, Beta-, and Gamma-Tubulin Genes.

Published in:

Molecular Biology & Evolution, 1999, v. 16, n. 9, p. 1308, doi. 10.1093/oxfordjournals.molbev.a026221

By:

Keeling, Patrick J.;
Deane, James A.;
Hink-Schauer, Clara;
Douglas, Susan E.;
Maier, Uwe-G.;
McFadden, Geoffrey I.

Publication type:

Article

Correlated SEM, FIB-SEM, TEM, and NanoSIMS Imaging of Microbes from the Hindgut of a Lower Termite: Methods for In Situ Functional and Ecological Studies of Uncultivable Microbes.

Published in:

Microscopy & Microanalysis, 2013, v. 19, n. 6, p. 1490, doi. 10.1017/S1431927613013482

By:

Carpenter, Kevin J.;
Weber, Peter K.;
Davisson, M. Lee;
Pett-Ridge, Jennifer;
Haverty, Michael I.;
Keeling, Patrick J.

Publication type:

Article

New Methods for Imaging, Isotopic Labeling, and Analyzing Termite Gut Microbes with SEM and NanoSIMS.

Published in:

2010

By:

Carpenter, Kevin J.;
Davisson, Lee;
Keeling, Patrick J.;
Pett-Ridge, Jennifer;
Weber, Peter K.

Publication type:

Abstract

COMMON EVOLUTIONARY ORIGIN OF STARCH BIOSYNTHETIC ENZYMES IN GREEN AND RED ALGAE.

Published in:

Journal of Phycology, 2005, v. 41, n. 6, p. 1131, doi. 10.1111/j.1529-8817.2005.00135.x

By:

Patron, Nicola J.;
Keeling, Patrick J.

Publication type:

Article

Early Evolutionary History of Dinoflagellates and Apicomplexans (Alveolata) as Inferred from Hsp90 and Actin Phylogenies.

Published in:

Journal of Phycology, 2004, v. 40, n. 2, p. 341, doi. 10.1111/j.1529-8817.2004.03129.x

By:

Leander, Brian S.;
Keeling, Patrick J.

Publication type:

Article

LESSARDIA ELONGATA GEN. ET SP. NOV. (DINOFLAGELLATA, PERIDINIALES, PODOLAMPACEAE) AND THE TAXONOMIC POSITION OF THE GENUS ROSCOFFIA <sup>1</sup>.

Published in:

Journal of Phycology, 2003, v. 39, n. 2, p. 368, doi. 10.1046/j.1529-8817.2003.02113.x

By:

Saldarriaga, Juan F.;
Leander, Brian S.;
Taylor, F. J. R. “Max”;
Keeling, Patrick J.

Publication type:

Article

DIVERSITY AND EVOLUTIONARY HISTORY OF PLASTIDS AND THEIR HOSTS.

Published in:

American Journal of Botany, 2004, v. 91, n. 10, p. 1481, doi. 10.3732/ajb.91.10.1481

By:

Keeling, Patrick J.

Publication type:

Article

Corallicolids: The elusive coral-infecting apicomplexans.

Published in:

PLoS Pathogens, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.ppat.1009845

By:

Keeling, Patrick J.;
Mathur, Varsha;
Kwong, Waldan K.

Publication type:

Article

Polymorphic Insertions and Deletions in Parabasalian Enolase Genes.

Published in:

Journal of Molecular Evolution, 2004, v. 58, n. 5, p. 550, doi. 10.1007/s00239-003-2577-4

By:

Keeling, Patrick J.

Publication type:

Article

Lateral Transfer and Recompartmentalization of Calvin Cycle Enzymes of Plants and Algae.

Published in:

Journal of Molecular Evolution, 2004, v. 58, n. 4, p. 367, doi. 10.1007/s00239-003-2558-7

By:

Rogers, Matthew;
Keeling, Patrick J.

Publication type:

Article

Dinoflagellate Nuclear SSU rRNA Phylogeny Suggests Multiple Plastid Losses and Replacements.

Published in:

Journal of Molecular Evolution, 2001, v. 53, n. 3, p. 204, doi. 10.1007/s002390010210

By:

Saldarriaga, Juan F.;
Taylor, F.J.R.;
Keeling, Patrick J.;
Cavalier-Smith, Thomas

Publication type:

Article

Evolutionary biology: Bridge over troublesome plastids.

Published in:

Nature, 2008, v. 451, n. 7181, p. 896, doi. 10.1038/451896a

By:

Keeling, Patrick J.

Publication type:

Article

Corrigendum: Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework.

Published in:

2020

By:

del Campo, Javier;
Heger, Thierry J.;
Rodríguez-Martínez, Raquel;
Worden, Alexandra Z.;
Richards, Thomas A.;
Massana, Ramon;
Keeling, Patrick J.

Publication type:

Correction Notice

Assessing the Diversity and Distribution of Apicomplexans in Host and Free-Living Environments Using High-Throughput Amplicon Data and a Phylogenetically Informed Reference Framework.

Published in:

Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02373

By:

del Campo, Javier;
Heger, Thierry J.;
Rodríguez-Martínez, Raquel;
Worden, Alexandra Z.;
Richards, Thomas A.;
Massana, Ramon;
Keeling, Patrick J.

Publication type:

Article

An Archaebacterial elF-1 A: new grist for the mill.

Published in:

1995

By:

Keeling, Patrick J.;
Ford Doolittle, W.

Publication type:

Letter

Colpodella spp.-like Parasite Infection in Woman, China.

Published in:

2012

By:

Yuan, Cong L.;
Keeling, Patrick J.;
Krause, Peter J.;
Horak, Ales;
Bent, Stephen;
Rollend, Lindsay;
Hua, Xiu G.

Publication type:

Case Study

Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26918-0

By:

Schön, Max E.;
Zlatogursky, Vasily V.;
Singh, Rohan P.;
Poirier, Camille;
Wilken, Susanne;
Mathur, Varsha;
Strassert, Jürgen F. H.;
Pinhassi, Jarone;
Worden, Alexandra Z.;
Keeling, Patrick J.;
Ettema, Thijs J. G.;
Wideman, Jeremy G.;
Burki, Fabien

Publication type:

Article

A Lack of Parasitic Reduction in the Obligate Parasitic Green Alga <i>Helicosporidium</i>.

Published in:

PLoS Genetics, 2014, v. 10, n. 5, p. 1, doi. 10.1371/journal.pgen.1004355

By:

Pombert, Jean-François;
Blouin, Nicolas Achille;
Lane, Chris;
Boucias, Drion;
Keeling, Patrick J.

Publication type:

Article

Validation of a universal set of primers to study animal‐associated microeukaryotic communities.

Published in:

Environmental Microbiology, 2019, v. 21, n. 10, p. 3855, doi. 10.1111/1462-2920.14733

By:

del Campo, Javier;
Pons, Maria J.;
Herranz, Maria;
Wakeman, Kevin C.;
del Valle, Juana;
Vermeij, Mark J. A.;
Leander, Brian S.;
Keeling, Patrick J.

Publication type:

Article

Global diversity and distribution of close relatives of apicomplexan parasites.

Published in:

Environmental Microbiology, 2018, v. 20, n. 8, p. 2824, doi. 10.1111/1462-2920.14134

By:

Mathur, Varsha;
del Campo, Javier;
Kolisko, Martin;
Keeling, Patrick J.

Publication type:

Article

EukRef‐Ciliophora: a manually curated, phylogeny‐based database of small subunit rRNA gene sequences of ciliates.

Published in:

Environmental Microbiology, 2018, v. 20, n. 6, p. 2218, doi. 10.1111/1462-2920.14264

By:

Boscaro, Vittorio;
Santoferrara, Luciana F.;
Zhang, Qianqian;
Gentekaki, Eleni;
Syberg‐Olsen, Mitchell J.;
del Campo, Javier;
Keeling, Patrick J.

Publication type:

Article

High‐throughput environmental sequencing reveals high diversity of litter and moss associated protist communities along a gradient of drainage and tree productivity.

Published in:

Environmental Microbiology, 2018, v. 20, n. 3, p. 1185, doi. 10.1111/1462-2920.14061

By:

Heger, Thierry J.;
Giesbrecht, Ian J. W.;
Gustavsen, Julia;
del Campo, Javier;
Kellogg, Colleen T. E.;
Hoffman, Kira M.;
Lertzman, Ken;
Mohn, William W.;
Keeling, Patrick J.

Publication type:

Article

Transformation of <italic>Diplonema papillatum</italic>, the type species of the highly diverse and abundant marine microeukaryotes Diplonemida (Euglenozoa).

Published in:

Environmental Microbiology, 2018, v. 20, n. 3, p. 1030, doi. 10.1111/1462-2920.14041

By:

Kaur, Binnypreet;
Valach, Matus;
Peña‐Diaz, Priscila;
Moreira, Sandrine;
Keeling, Patrick J.;
Burger, Gertraud;
Lukeš, Julius;
Faktorová, Drahomíra

Publication type:

Article

Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing.

Published in:

Environmental Microbiology, 2018, v. 20, n. 2, p. 815, doi. 10.1111/1462-2920.14018

By:

Orsi, William D.;
Wilken, Susanne;
del Campo, Javier;
Heger, Thierry;
James, Erick;
Richards, Thomas A.;
Keeling, Patrick J.;
Worden, Alexandra Z.;
Santoro, Alyson E.

Publication type:

Article

Sympatric kelp species share a large portion of their surface bacterial communities.

Published in:

Environmental Microbiology, 2018, v. 20, n. 2, p. 658, doi. 10.1111/1462-2920.13993

By:

Lemay, Matthew A.;
Martone, Patrick T.;
Keeling, Patrick J.;
Burt, Jenn M.;
Krumhansl, Kira A.;
Sanders, Rhea D.;
Wegener Parfrey, Laura

Publication type:

Article

Environmental PCR survey to determine the distribution of a non-canonical genetic code in uncultivable oxymonads.

Published in:

Environmental Microbiology, 2008, v. 10, n. 1, p. 65, doi. 10.1111/j.1462-2920.2007.01430.x

By:

de Koning, Audrey P.;
Noble, Geoffrey P.;
Heiss, Aaron A.;
Wong, Jensen;
Keeling, Patrick J.

Publication type:

Article

Microbial communities in sandy beaches from the three domains of life differ by microhabitat and intertidal location.

Published in:

Molecular Ecology, 2022, v. 31, n. 11, p. 3210, doi. 10.1111/mec.16453

By:

Okamoto, Noriko;
Keeling, Patrick J.;
Leander, Brian S.;
Tai, Vera

Publication type:

Article

A Mitosome With Distinct Metabolism in the Uncultured Protist Parasite Paramikrocytos canceri (Rhizaria, Ascetosporea).

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 3, p. 1, doi. 10.1093/gbe/evad022

By:

Onuț-Brännström, Ioana;
Stairs, Courtney W;
Campos, Karla Iveth Aguilera;
Thorén, Markus Hiltunen;
Ettema, Thijs J G;
Keeling, Patrick J;
Bass, David;
Burki, Fabien

Publication type:

Article

Gene Transfer Agents in Bacterial Endosymbionts of Microbial Eukaryotes.

Published in:

Genome Biology & Evolution, 2022, v. 14, p. 1, doi. 10.1093/gbe/evac099

By:

George, Emma E;
Tashyreva, Daria;
Kwong, Waldan K;
Okamoto, Noriko;
Horák, Aleš;
Husnik, Filip;
Lukeš, Julius;
Keeling, Patrick J

Publication type:

Article

Phylogenomics Identifies a New Major Subgroup of Apicomplexans, Marosporida class nov., with Extreme Apicoplast Genome Reduction.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 2, p. 1, doi. 10.1093/gbe/evaa244

By:

Mathur, Varsha;
Kwong, Waldan K;
Husnik, Filip;
Irwin, Nicholas A T;
Kristmundsson, Árni;
Gestal, Camino;
Freeman, Mark;
Keeling, Patrick J

Publication type:

Article

Single-Cell Transcriptomics of Abedinium Reveals a New Early-Branching Dinoflagellate Lineage.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 12, p. 2417, doi. 10.1093/gbe/evaa196

By:

Cooney, Elizabeth C;
Okamoto, Noriko;
Cho, Anna;
Hehenberger, Elisabeth;
Richards, Thomas A;
Santoro, Alyson E;
Worden, Alexandra Z;
Leander, Brian S;
Keeling, Patrick J

Publication type:

Article

Extensive Reduction of the Nuclear Pore Complex in Nucleomorphs.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 3, p. 678, doi. 10.1093/gbe/evz029

By:

Irwin, Nicholas A T;
Keeling, Patrick J

Publication type:

Article

A Complex Distribution of Elongation Family GTPases EF1A and EFL in Basal Alveolate Lineages.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 9, p. 2361, doi. 10.1093/gbe/evu186

By:

Mikhailov, Kirill V.;
Janouškovec, Jan;
Tikhonenkov, Denis V.;
Mirzaeva, Gulnara S.;
Diakin, Andrei Yu.;
Simdyanov, Timur G.;
Mylnikov, Alexander P.;
Keeling, Patrick J.;
Aleoshin, Vladimir V.

Publication type:

Article

Evidence for the Retention of Two Evolutionary Distinct Plastids in Dinoflagellates with Diatom Endosymbionts.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 9, p. 2321, doi. 10.1093/gbe/evu182

By:

Hehenberger, Elisabeth;
Imanian, Behzad;
Burki, Fabien;
Keeling, Patrick J.

Publication type:

Article

Horizontal Gene Transfer and Redundancy of Tryptophan Biosynthetic Enzymes in Dinotoms.

Published in:

Genome Biology & Evolution, 2014, v. 6, n. 2, p. 333, doi. 10.1093/gbe/evu014

By:

Imanian, Behzad;
Keeling, Patrick J.

Publication type:

Article

Gene Conversion Shapes Linear Mitochondrial Genome Architecture.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 5, p. 905, doi. 10.1093/gbe/evt059

By:

Smith, David Roy;
Keeling, Patrick J.

Publication type:

Article

Re-evaluating the Green versus Red Signal in Eukaryotes with Secondary Plastid of Red Algal Origin.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 626, doi. 10.1093/gbe/evs049

By:

Burki, Fabien;
Flegontov, Pavel;
Oborník, Miroslav;
Cihlář, Jaromír;
Pain, Arnab;
Lukeš, Julius;
Keeling, Patrick J.

Publication type:

Article