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Neural network‐derived Potts models for structure‐based protein design using backbone atomic coordinates and tertiary motifs.
- Published in:
- Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 2, p. 1, doi. 10.1002/pro.4554
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- Article
Molecular determinants of TRAF6 binding specificity suggest that native interaction partners are not optimized for affinity.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 11, p. 1, doi. 10.1002/pro.4429
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- Article
Tertiary motifs as building blocks for the design of protein‐binding peptides.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 6, p. 1, doi. 10.1002/pro.4322
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- Article
Native proline-rich motifs exploit sequence context to target actin-remodeling Ena/VASP protein ENAH.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.70680
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- Article
A distributed residue network permits conformational binding specificity in a conserved family of actin remodelers.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.70601
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- Article
PixelDB: Protein–peptide complexes annotated with structural conservation of the peptide binding mode.
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 8, p. 1535, doi. 10.1002/pro.3431
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- Article
PixelDB: Protein-peptide complexes annotated with structural conservation of the peptide binding mode.
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- Protein Science: A Publication of the Protein Society, 2018, v. 27, n. 1, p. 276, doi. 10.1002/pro.3320
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- Article
Combinatorial bZIP dimers display complex DNA-binding specificity landscapes.
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- eLife, 2017, p. 1, doi. 10.7554/eLife.19272
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- Article
Comparison of the peptide binding preferences of three closely related TRAF paralogs: TRAF2, TRAF3, and TRAF5.
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- Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 7, p. 1273, doi. 10.1002/pro.2881
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- Article
The Orientations of Large Aspect-Ratio Coiled-Coil Proteins Attached to Gold Nanostructures.
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- Small, 2016, v. 12, n. 11, p. 1498, doi. 10.1002/smll.201502419
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- Article
AB-Bind: Antibody binding mutational database for computational affinity predictions.
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- Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 2, p. 393, doi. 10.1002/pro.2829
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- Article
Data-Driven Prediction and Design of bZIP Coiled-Coil Interactions.
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- PLoS Computational Biology, 2015, v. 11, n. 2, p. 1, doi. 10.1371/journal.pcbi.1004046
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- Article
Increasing the affinity of selective bZIP-binding peptides through surface residue redesign.
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- Protein Science: A Publication of the Protein Society, 2014, v. 23, n. 7, p. 940, doi. 10.1002/pro.2477
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- Article
Genome-Wide Prediction and Validation of Peptides That Bind Human Prosurvival Bcl-2 Proteins.
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- PLoS Computational Biology, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003693
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- Article
Designing specific protein-protein interactions using computation, experimental library screening, or integrated methods.
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- Protein Science: A Publication of the Protein Society, 2012, v. 21, n. 7, p. 949, doi. 10.1002/pro.2096
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- Article
Multicoil2: Predicting Coiled Coils and Their Oligomerization States from Sequence in the Twilight Zone.
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- PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0023519
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- Article
Identifying and reducing error in cluster-expansion approximations of protein energies.
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- Journal of Computational Chemistry, 2010, v. 31, n. 16, p. 2900, doi. 10.1002/jcc.21585
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- Article
The MCL-1 BH3 helix is an exclusive MCL-1 inhibitor and apoptosis sensitizer.
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- Nature Chemical Biology, 2010, v. 6, n. 8, p. 595, doi. 10.1038/nchembio.391
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- Article
Mcl-1–Bim complexes accommodate surprising point mutations via minor structural changes.
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- Protein Science: A Publication of the Protein Society, 2010, v. 19, n. 3, p. 507, doi. 10.1002/pro.329
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- Article
Cluster expansion models for flexible-backbone protein energetics.
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- Journal of Computational Chemistry, 2009, v. 30, n. 15, p. 2402, doi. 10.1002/jcc.21249
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- Article
X-ray vs. NMR structures as templates for computational protein design.
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- Proteins, 2009, v. 77, n. 1, p. 97, doi. 10.1002/prot.22421
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- Article
Design of protein-interaction specificity gives selective bZIP-binding peptides.
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- Nature, 2009, v. 458, n. 7240, p. 859, doi. 10.1038/nature07885
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- Article
Predicting helix orientation for coiled-coil dimers.
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- Proteins, 2008, v. 72, n. 3, p. 1048, doi. 10.1002/prot.22118
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- Article
Computing van der Waals energies in the context of the rotamer approximation.
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- Proteins, 2007, v. 68, n. 4, p. 863, doi. 10.1002/prot.21470
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- Article
Ultra-Fast Evaluation of Protein Energies Directly from Sequence.
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- PLoS Computational Biology, 2006, v. 2, n. 6, p. e63, doi. 10.1371/journal.pcbi.0020063
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- Article
AVID: An integrative framework for discovering functional relationships among proteins.
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- BMC Bioinformatics, 2005, v. 6, p. 136, doi. 10.1186/1471-2105-6-136
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- Article
The structure of VibH represents nonribosomal peptide synthetase condensation, cyclization and epimerization domains.
- Published in:
- Nature Structural Biology, 2002, v. 9, n. 7, p. 522
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- Article