Works by Kawai, Gota

Results: 67

1H, 13C and 15N Resonance Assignments of the 2′-5′ RNA Ligase-like Protein from Pyrococcus furiosus.

Published in:

Journal of Biomolecular NMR, 2006, v. 36, p. 16, doi. 10.1007/s10858-005-5581-8

By:

Okada, Kiyoshi;
Matsuda, Takashi;
Sakamoto, Taiichi;
Muto, Yutaka;
Yokoyama, Shigeyuki;
Kanai, Akio;
Kawai, Gota

Publication type:

Article

Solution Structure of a GAAG Tetraloop in Helix 6 of SRP RNA from Pyrococcus furiosus.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2006, v. 25, n. 4-6, p. 383, doi. 10.1080/15257770600683979

By:

Okada, Kiyoshi;
Takahashi, Mari;
Sakamoto, Taiichi;
Kawai, Gota;
Nakamura, Kouji;
Kanai, Akio

Publication type:

Article

A method for finding optimal RNA secondary structures using a new entropy model (vsfold).

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2006, v. 25, n. 2, p. 171, doi. 10.1080/15257770500446915

By:

Dawson, Wayne;
Fujiwara, Kazuya;
Kawai, Gota;
Futamura, Yasuhiro;
Yamamoto, Kenji

Publication type:

Article

Analysis of Local Convergence in NMR Structure Calculation for RNA by a Classification System for Nucleic Acid Structure (CSNA).

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2004, v. 23, n. 4, p. 691, doi. 10.1081/NCN-120037509

By:

Someya, Tatsuhiko;
Sakamoto, Taiichi;
Takasu, Akitsugu;
Kawai, Gota

Publication type:

Article

Solution structure and functional importance of a conserved RNA hairpin of eel LINE UnaL2.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 18, p. 5184, doi. 10.1093/nar/gkl664

By:

Nomura, Yusuke;
Kajikawa, Masaki;
Baba, Seiki;
Nakazato, Shinta;
Imai, Takayuki;
Sakamoto, Taiichi;
Okada, Norihiro;
Kawai, Gota

Publication type:

Article

NMR structures of double loops of an RNA aptamer against mammalian initiation factor 4A.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 2, p. 745, doi. 10.1093/nar/gki222

By:

Sakamoto, Taiichi;
Oguro, Akihiro;
Kawai, Gota;
Ohtsu, Takashi;
Nakamura, Yoshikazu

Publication type:

Article

An NMR and mutational analysis of an RNA pseudoknot of Escherichia coli tmRNA involved in trans-translation.

Published in:

Nucleic Acids Research, 1999, v. 27, n. 18, p. 3667, doi. 10.1093/nar/27.18.3667

By:

Nameki, Nobukazu;
Chattopadhyay, Pratima;
Himeno, Hyouta;
Muto, Akira;
Kawai, Gota

Publication type:

Article

Expression analysis of box C/D snoRNAs with SNPs between C57BL/6 and MSM/Ms strains in male mouse.

Published in:

PLoS ONE, 2023, v. 18, n. 7, p. 1, doi. 10.1371/journal.pone.0288362

By:

Saito, Rumiko;
Otsu, Maina;
Kiyosawa, Hidenori;
Kawai, Gota

Publication type:

Article

Microtubule-associated protein (MAP) 4 interacts with microtubules in an intrinsically disordered manner.

Published in:

Bioscience, Biotechnology & Biochemistry, 2014, v. 78, n. 11, p. 1864, doi. 10.1080/09168451.2014.940836

By:

Yurika Hashi;
Gota Kawai;
Susumu Kotani

Publication type:

Article

Influence of the 5′-terminal sequences on the 5′-UTR structure of HIV-1 genomic RNA.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-90427-9

By:

Obayashi, Camille Michiko;
Shinohara, Yoko;
Masuda, Takao;
Kawai, Gota

Publication type:

Article

The Characteristic Structure of Anti-HIV Actinohivin in Complex with Three HMTG D1 Chains of HIV-gp120.

Published in:

ChemBioChem, 2014, v. 15, n. 18, p. 2766, doi. 10.1002/cbic.201402352

By:

Zhang, Fang;
Hoque, Mominul M.;
Jiang, Jiandong;
Suzuki, Kaoru;
Tsunoda, Masaru;
Takeda, Yoichi;
Ito, Yukishige;
Kawai, Gota;
Tanaka, Haruo;
Takénaka, Akio

Publication type:

Article

Synthesis of a protected ribonucleoside phosphoramidite-linked spin label via an alkynyl chain at the 5′ position of uridine.

Published in:

Synthetic Communications, 2019, v. 49, n. 1, p. 136, doi. 10.1080/00397911.2018.1545033

By:

Hatano, Akihiko;
Terado, Nanae;
Kanno, Yuichi;
Nakamura, Toshikazu;
Kawai, Gota

Publication type:

Article

A new entropy model for RNA: part V, Incorporating the Flory-Huggins model in structure prediction and folding.

Published in:

Journal of Nucleic Acids Investigation, 2015, v. 6, n. 1, p. 1

By:

Wayne Dawson;
Gota Kawai

Publication type:

Article

A new entropy model for RNA: part IV, The Minimum Free Energy and the thermodynamically most-probable folding pathway.

Published in:

Journal of Nucleic Acids Investigation, 2015, v. 6, n. 1, p. 1

By:

Wayne Dawson;
Gota Kawai

Publication type:

Article

A new entropy model for RNA: part III. Is the folding free energy landscape of RNA funnel shaped?

Published in:

Journal of Nucleic Acids Investigation, 2014, v. 5, n. 1, p. 1, doi. 10.4081/jnai.2014.2652

By:

Dawson, Wayne;
Toshikuni Takai;
Nobuharu Ito;
Kentaro Shimizu;
Gota Kawai

Publication type:

Article

A new entropy model for RNA: part III, Is the folding free energy landscape of RNA funnel shaped?

Published in:

Journal of Nucleic Acids Investigation, 2013, v. 4, n. 1, p. 1, doi. 10.4081/jnai.2013.2651

By:

Wayne Dawson;
Toshikuni Takai;
Nobuharu Ito;
Kentaro Shimizu;
Gota Kawai

Publication type:

Article

A new entropy model for RNA: part II. Persistence-related entropic contributions to RNA secondary structure free energy calculations.

Published in:

Journal of Nucleic Acids Investigation, 2013, v. 4, n. 1, p. 4, doi. 10.4081/jnai.2013.2651

By:

Dawson, Wayne;
Yamamoto, Kenji;
Shimizu, Kentaro;
Gota Kawai

Publication type:

Article

Interactions of a didomain fragment of the Drosophila Sex-lethal protein with single-stranded uridine-rich oligoribonucleotides derived from the transformer and Sex-lethal messenger RNA precursors: NMR with residue-selective [5-2H]uridine substitutions.

Published in:

Journal of Biomolecular NMR, 2000, v. 17, n. 2, p. 153, doi. 10.1023/A:1008357028116

By:

Kim, Insil;
Muto, Yutaka;
Watanabe, Satoru;
Kitamura, Aya;
Futamura, Yasuhiro;
Yokoyama, Shigeyuki;
Hosono, Kazumi;
Kawai, Gota;
Takaku, Hiroshi;
Dohmae, Naoshi;
Takio, Koji;
Sakamoto, Hiroshi;
Shimura, Yoshiro

Publication type:

Article

Polyamines stimulate the CHSY1 synthesis through the unfolding of the RNA G-quadruplex at the 50-untraslated region.

Published in:

Biochemical Journal, 2018, v. 475, n. 23, p. 3797, doi. 10.1042/BCJ20180672

By:

Katsutoshi Yamaguchi;
Kiryu Asakura;
Masataka Imamura;
Gota Kawai;
Taiichi Sakamoto;
Tomomi Furihata;
Linhardt, Robert J.;
Kazuei Igarashi;
Toshihiko Toida;
Kyohei Higashi

Publication type:

Article

Recognition of a Bulged RNA by Peptides Derived from the Influenza NS1 Protein.

Published in:

Journal of Biochemistry, 2008, v. 143, n. 3, p. 339, doi. 10.1093/jb/mvm225

By:

Someya, Tatsuhiko;
Hosono, Kazumi;
Morimura, Kaori;
Takaku, Hiroshi;
Kawai, Gota

Publication type:

Article

Structural Analysis of a Mutant of the HIV-1 Integrase Zinc Finger Domain That Forms a Single Conformation.

Published in:

Journal of Biochemistry, 2006, v. 139, n. 4, p. 753, doi. 10.1093/jb/mvj085

By:

Nomura, Yusuke;
Masuda, Takao;
Kawai, Gota

Publication type:

Article

Interaction Analysis between tmRNA and SmpB from Thermus thermophilus.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 6, p. 729, doi. 10.1093/jb/mvi180

By:

Nameki, Nobukazu;
Someya, Tatsuhiko;
Okano, Satoshi;
Suemasa, Reiko;
Kimoto, Michiko;
Hanawa-Suetsugu, Kyoko;
Terada, Takaho;
Shirouzu, Mikako;
Hirao, Ichiro;
Takaku, Hiroshi;
Himeno, Hyouta;
Muto, Akira;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article

Solution RNA Structures of the HIV-1 Dimerization Initiation Site in the Kissing-Loop and Extended-Duplex Dimers.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 5, p. 583, doi. 10.1093/jb/mvi158

By:

Baba, Seiki;
Takahashi, Ken-ichi;
Noguchi, Satoko;
Takaku, Hiroshi;
Koyanagi, Yoshio;
Yamamoto, Naoki;
Kawai, Gota

Publication type:

Article

Role of the Zinc Fingers of HIV-1 Nucleocapsid Protein in Maturation of Genomic RNA.

Published in:

Journal of Biochemistry, 2003, v. 134, n. 5, p. 637, doi. 10.1093/jb/mvg200

By:

Baba, Seiki;
Takahashi, Ken-ichi;
Koyanagi, Yoshio;
Yamamoto, Naoki;
Takaku, Hiroshi;
Gorelick, Robert J.;
Kawai, Gota

Publication type:

Article

Classification of RNA Structures Based on Hydrogen Bond and Base-Base Stacking Patterns: Application for NMR Structures1.

Published in:

Journal of Biochemistry, 2002, v. 132, n. 2, p. 211, doi. 10.1093/oxfordjournals.jbchem.a003212

By:

Takasu, Akitsugu;
Watanabe, Kimitsuna;
Kawai, Gota

Publication type:

Article

Solution Structure of a SRP19 Binding Domain in Human SRP RNA1.

Published in:

Journal of Biochemistry, 2002, v. 132, n. 2, p. 177, doi. 10.1093/oxfordjournals.jbchem.a003207

By:

Sakamoto, Taiichi;
Morita, Satoshi;
Tabata, Kazutoshi;
Nakamura, Kouji;
Kawai, Gota

Publication type:

Article

NMR Analysis of Intra- and Inter-Molecular Stems in the Dimerization Initiation Site of the HIV-1 Genome1.

Published in:

Journal of Biochemistry, 2000, v. 127, n. 4, p. 681, doi. 10.1093/oxfordjournals.jbchem.a022657

By:

Takahashi, Ken-ichi;
Baba, Seiki;
Hayashi, Yojiro;
Koyanagi, Yoshio;
Yamamoto, Naoki;
Takaku, Hiroshi;
Kawai, Gota

Publication type:

Article

Stable Isotope-Edited NMR Analysis of Ascaris suum Mitochondrial tRNAMet Having a TV-Replacement Loop1.

Published in:

Journal of Biochemistry, 1998, v. 124, n. 1, p. 28, doi. 10.1093/oxfordjournals.jbchem.a022092

By:

Ohtsuki, Takashi;
Kawai, Gota;
Watanabe, Kimitsuna

Publication type:

Article

Hairpin Structure of an RNA 28-mer, Which Contains a Sequence of the Enzyme Component of a Hammerhead Ribozyme System: Evidence for Tandem G: A Pairs That Are Not of Side-by-Side Type1.

Published in:

Journal of Biochemistry, 1997, v. 122, n. 3, p. 556, doi. 10.1093/oxfordjournals.jbchem.a021789

By:

Sakamoto, Taiichi;
Kawai, Gota;
Katahira, Masato;
Kim, Mi Hee;
Tanaka, Yoichiro;
Kurihara, Yasuyuki;
Kohno, Toshiyuki;
Watanabe, Satoru;
Yokoyama, Shigeyuki;
Watanabe, Kimitsuna;
Uesugi, Seiichi

Publication type:

Article

Assignment of Imino Proton Signals of G-C Base Pairs and Magnesium Ion Binding: An NMR Study of Bovine Mitochondrial tRNASerGCU Lacking the Entire D Arm1.

Published in:

Journal of Biochemistry, 1997, v. 121, n. 6, p. 1115, doi. 10.1093/oxfordjournals.jbchem.a021703

By:

Hayashi, Ikuko;
Yokogawa, Takashi;
Kawai, Gota;
Ueda, Takuya;
Nishikawa, Kazuya;
Watanabe, Kimitsuna

Publication type:

Article

Automated Chemical Synthesis of Biologically Active tRNA Having a Sequence Corresponding to Ascaris suum Mitochondrial tRNAMet toward NMR Measurements1.

Published in:

Journal of Biochemistry, 1996, v. 120, n. 6, p. 1070, doi. 10.1093/oxfordjournals.jbchem.a021522

By:

Ohtsuki, Takashi;
Vinayak, Ravi;
Watanabe, Yoh-ichi;
Kita, Kiyoshi;
Kawai, Gota;
Watanabe, Kimitsuna

Publication type:

Article

Distinct RNA recognition mechanisms in closely related LINEs from zebrafish.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2019, v. 38, n. 4, p. 294, doi. 10.1080/15257770.2018.1527348

By:

Otsu, Maina;
Kawai, Gota

Publication type:

Article

5-Methylcytosine containing CG decamer as Z-DNA embedded sequence for a potential Z-DNA binding protein probe.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2018, v. 37, n. 9, p. 485, doi. 10.1080/15257770.2018.1498512

By:

Vongsutilers, Vorasit;
Sawaspaiboontawee, Kulwadee;
Tuesuwan, Bodin;
Shinohara, Yoko;
Kawai, Gota

Publication type:

Article

In NMR Tube Transcription for Rapid Screening of RNA Conformation.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2015, v. 34, n. 2, p. 103, doi. 10.1080/15257770.2014.964412

By:

Okui, Saya;
Kawai, Gota

Publication type:

Article

Effect of Yuzu (Citrus junos) Seed Limonoids and Spermine on Intestinal Microbiota and Hypothalamic Tissue in the Sandhoff Disease Mouse Model.

Published in:

Medical Sciences, 2021, v. 9, n. 1, p. 17, doi. 10.3390/medsci9010017

By:

Minamisawa, Mayumi;
Suzumura, Takuma;
Bose, Sudeep;
Taniai, Tetsuyuki;
Kawai, Gota;
Suzuki, Kyoko;
Yamaguchi, Akira;
Yamanaka, Shoji;
Murai, Noriyuki

Publication type:

Article

Crystal structure of guanosine 5′‐monophosphate synthetase from the thermophilic bacterium Thermus thermophilus HB8.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2024, v. 80, n. 10, p. 278, doi. 10.1107/S2053230X2400877X

By:

Nemoto, Naoki;
Baba, Seiki;
Kawai, Gota;
Sampei, Gen-ichi

Publication type:

Article

Crystal structure of adenylosuccinate lyase from the thermophilic bacterium Thermus thermophilus HB8.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2023, v. 79, n. 11, p. 278, doi. 10.1107/S2053230X23009020

By:

Nemoto, Naoki;
Kawai, Gota;
Sampei, Gen-ichi

Publication type:

Article

An RNA Fragment Consisting of the P7 and P9.0 Stems and the 3′-Terminal Guanosine of the Tetrahymena Group I Intron.

Published in:

Nucleic Acids Research, 1996, v. 24, n. 7, p. 1337, doi. 10.1093/nar/24.7.1337

By:

Watanabe, Satoru;
Kawai, Gota;
Muto, Yutaka;
Watanabe, Kimitsuna;
Inoue, Tan;
Yokoyama, Shigeyuki

Publication type:

Article

Preparation of Biologically Active Ascaris Suum Mitochondrial tRNAMet With a TV-Replacement Loop by Ligation of Chemically Synthesized RNA Fragments.

Published in:

Nucleic Acids Research, 1996, v. 24, n. 4, p. 662, doi. 10.1093/nar/24.4.662

By:

Ohtsuki, Takashi;
Kawai, Gota;
Watanabe, Yoh-ichi;
Kita, Kiyoshi;
Nishikawa, Kazuya;
Watanabe, Kimitsuna

Publication type:

Article

Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus.

Published in:

Journal of Biochemistry, 2024, v. 175, n. 6, p. 671, doi. 10.1093/jb/mvae010

By:

Kawai, Gota;
Okada, Kiyoshi;
Baba, Seiki;
Sato, Asako;
Sakamoto, Taiichi;
Kanai, Akio

Publication type:

Article

Interaction between a fluoroquinolone derivative and RNAs with a single bulge.

Published in:

Journal of Biochemistry, 2022, v. 171, n. 2, p. 239, doi. 10.1093/jb/mvab124

By:

Nagano, Konami;
Kamimura, Takashi;
Kawai, Gota

Publication type:

Article

Crystal structure of adenylate kinase from an extremophilic archaeon Aeropyrum pernix with ATP and AMP.

Published in:

Journal of Biochemistry, 2020, v. 168, n. 3, p. 223, doi. 10.1093/jb/mvaa043

By:

Shibanuma, Yoshinori;
Nemoto, Naoki;
Yamamoto, Norifumi;
Sampei, Gen-Ichi;
Kawai, Gota

Publication type:

Article

RNomics of Thermus themophilus HB8 by DNA microarray and next-generation sequencing.

Published in:

Journal of Biochemistry, 2017, v. 162, n. 6, p. 423, doi. 10.1093/jb/mvx046

By:

Gota Kawai;
Yuri Aoki;
Maina Otsu;
Naomi Koike;
Gen-ichi Sampei

Publication type:

Article

Solution structure of a reverse transcriptase recognition site of a LINE RNA from zebrafish.

Published in:

Journal of Biochemistry, 2017, v. 162, n. 4, p. 279, doi. 10.1093/jb/mvx026

By:

Maina Otsu;
Masaki Kajikawa;
Norihiro Okada;
Gota Kawai

Publication type:

Article

Two stems with different characteristics and an internal loop in an RNA aptamer contribute to spermine-binding.

Published in:

Journal of Biochemistry, 2017, v. 161, n. 2, p. 197, doi. 10.1093/jb/mvw062

By:

Akihiro Oguro;
Asumi Yanagida;
Yuta Fujieda;
Ryo Amano;
Maina Otsu;
Taiichi Sakamoto;
Gota Kawai;
Senya Matsufuji

Publication type:

Article

Sequence and structure analysis of a mirror tRNA located upstream of the cytochrome oxidase I mRNA in mouse mitochondria.

Published in:

Journal of Biochemistry, 2016, v. 159, n. 3, p. 341, doi. 10.1093/jb/mvv106

By:

Saya Okui;
Chisato Ushida;
Hidenori Kiyosawa;
Gota Kawai

Publication type:

Article

Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus.

Published in:

Journal of Biochemistry, 2016, v. 159, n. 3, p. 313, doi. 10.1093/jb/mvv107

By:

Mayumi Kanagawa;
Seiki Baba;
Yuzo Watanabe;
Noriko Nakagawa;
Akio Ebihara;
Seiki Kuramitsu;
Shigeyuki Yokoyama;
Gen-ichi Sampei;
Gota Kawai

Publication type:

Article

Solution structure of a DNA mimicking motif of an RNA aptamer against transcription factor AML1 Runt domain.

Published in:

Journal of Biochemistry, 2013, v. 154, n. 6, p. 513, doi. 10.1093/jb/mvt082

By:

Nomura, Yusuke;
Tanaka, Yoichiro;
Fukunaga, Jun-ichi;
Fujiwara, Kazuya;
Chiba, Manabu;
Iibuchi, Hiroaki;
Tanaka, Taku;
Nakamura, Yoshikazu;
Kawai, Gota;
Kozu, Tomoko;
Sakamoto, Taiichi

Publication type:

Article

Structures and reaction mechanisms of the two related enzymes, PurN and PurU.

Published in:

Journal of Biochemistry, 2013, v. 154, n. 6, p. 569, doi. 10.1093/jb/mvt090

By:

Sampei, Gen-ichi;
Kanagawa, Mayumi;
Baba, Seiki;
Shimasaki, Toshiaki;
Taka, Hiroyuki;
Mitsui, Shohei;
Fujiwara, Shinji;
Yanagida, Yuki;
Kusano, Mayumi;
Suzuki, Sakiko;
Terao, Kayoko;
Kawai, Hiroya;
Fukai, Yoko;
Nakagawa, Noriko;
Ebihara, Akio;
Kuramitsu, Seiki;
Yokoyama, Shigeyuki;
Kawai, Gota

Publication type:

Article

Professor Tatsuo Miyazawa: from molecular structure to biological function.

Published in:

Journal of Biochemistry, 2010, v. 148, n. 6, p. 631, doi. 10.1093/jb/mvq118

By:

Kawai, Gota;
Yokoyama, Shigeyuki

Publication type:

Article