Works by Kaster, Anne‐Kristin

Results: 35

Methanogenic archaea: ecologically relevant differences in energy conservation.

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 8, p. 579, doi. 10.1038/nrmicro1931

By:

Thauer, Rudolf K.;
Kaster, Anne-Kristin;
Seedorf, Henning;
Buckel, Wolfgang;
Hedderich, Reiner

Publication type:

Article

Targeted Cell Sorting Combined With Single Cell Genomics Captures Low Abundant Microbial Dark Matter With Higher Sensitivity Than Metagenomics.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.01377

By:

Dam, Hang T.;
Vollmers, John;
Sobol, Morgan S.;
Cabezas, Angela;
Kaster, Anne-Kristin

Publication type:

Article

Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere

Published in:

Antonie van Leeuwenhoek, 2020, v. 113, n. 12, p. 1999, doi. 10.1007/s10482-020-01489-0

By:

Wiegand, Sandra;
Jogler, Mareike;
Boedeker, Christian;
Heuer, Anja;
Rast, Patrick;
Peeters, Stijn H.;
Jetten, Mike S. M.;
Kaster, Anne-Kristin;
Rohde, Manfred;
Kallscheuer, Nicolai;
Jogler, Christian

Publication type:

Article

Updates to the recently introduced family Lacipirellulaceae in the phylum Planctomycetes: isolation of strains belonging to the novel genera Aeoliella, Botrimarina, Pirellulimonas and Pseudobythopirellula and the novel species Bythopirellula polymerisocia and Posidoniimonas corsicana

Published in:

Antonie van Leeuwenhoek, 2020, v. 113, n. 12, p. 1979, doi. 10.1007/s10482-020-01486-3

By:

Wiegand, Sandra;
Jogler, Mareike;
Boedeker, Christian;
Heuer, Anja;
Peeters, Stijn H.;
Kallscheuer, Nicolai;
Jetten, Mike S. M.;
Kaster, Anne-Kristin;
Rohde, Manfred;
Jogler, Christian

Publication type:

Article

Sustainable agriculture: leveraging microorganisms for a circular economy.

Published in:

Applied Microbiology & Biotechnology, 2024, v. 108, n. 1, p. 1, doi. 10.1007/s00253-024-13294-0

By:

Glockow, Till;
Kaster, Anne-Kristin;
Rabe, Kersten S.;
Niemeyer, Christof M.

Publication type:

Article

Printing Microbial Dark Matter: Using Single Cell Dispensing and Genomics to Investigate the Patescibacteria/Candidate Phyla Radiation.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.635506

By:

Wiegand, Sandra;
Dam, Hang T.;
Riba, Julian;
Vollmers, John;
Kaster, Anne-Kristin

Publication type:

Article

IncP‐type plasmids carrying genes for antibiotic resistance or for aromatic compound degradation are prevalent in sequenced Aromatoleum and Thauera strains.

Published in:

Environmental Microbiology, 2022, v. 24, n. 12, p. 6411, doi. 10.1111/1462-2920.16262

By:

Lo, Hao‐Yu;
Martínez‐Lavanchy, Paula M.;
Goris, Tobias;
Heider, Johann;
Boll, Matthias;
Kaster, Anne‐Kristin;
Müller, Jochen A.

Publication type:

Article

Genome‐inferred spatio‐temporal resolution of an uncultivated Roizmanbacterium reveals its ecological preferences in groundwater.

Published in:

Environmental Microbiology, 2020, v. 22, n. 2, p. 726, doi. 10.1111/1462-2920.14865

By:

Geesink, Patricia;
Wegner, Carl‐Eric;
Probst, Alexander J.;
Herrmann, Martina;
Dam, Hang T.;
Kaster, Anne‐Kristin;
Küsel, Kirsten

Publication type:

Article

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy.

Published in:

Environmental Microbiology, 2019, v. 21, n. 10, p. 3780, doi. 10.1111/1462-2920.14728

By:

Taubert, Martin;
Grob, Carolina;
Crombie, Andrew;
Howat, Alexandra M.;
Burns, Oliver J.;
Weber, Miriam;
Lott, Christian;
Kaster, Anne‐Kristin;
Vollmers, John;
Jehmlich, Nico;
von Bergen, Martin;
Chen, Yin;
Murrell, John Colin

Publication type:

Article

Unravelling the Identity, Metabolic Potential and Global Biogeography of the Atmospheric Methane‐Oxidizing Upland Soil Cluster α.

Published in:

Environmental Microbiology, 2018, v. 20, n. 3, p. 1016, doi. 10.1111/1462-2920.14036

By:

Pratscher, Jennifer;
Vollmers, John;
Wiegand, Sandra;
Dumont, Marc G.;
Kaster, Anne‐Kristin

Publication type:

Article

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!

Published in:

PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0169662

By:

Vollmers, John;
Wiegand, Sandra;
Kaster, Anne-Kristin

Publication type:

Article

Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea.

Published in:

Microbial Biotechnology, 2017, v. 10, n. 1, p. 125, doi. 10.1111/1751-7915.12420

By:

Song, Yizhi;
Kaster, Anne-Kristin;
Vollmers, John;
Song, Yanqing;
Davison, Paul A.;
Frentrup, Martinique;
Preston, Gail M.;
Thompson, Ian P.;
Murrell, J. Colin;
Yin, Huabing;
Hunter, C. Neil;
Huang, Wei E.

Publication type:

Article

Back to Basics: A Simplified Improvement to Multiple Displacement Amplification for Microbial Single-Cell Genomics.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 5, p. 4270, doi. 10.3390/ijms24054270

By:

Sobol, Morgan S.;
Kaster, Anne-Kristin

Publication type:

Article

First shotgun metagenomics study of Juan de Fuca deep-sea sediments reveals distinct microbial communities above, within, between, and below sulfate methane transition zones.

Published in:

Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1241810

By:

Metze, Felix;
Vollmers, John;
Lenk, Florian;
Kaster, Anne-Kristin

Publication type:

Article

Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00472

By:

Vollmers, John;
Frentrup, Martinique;
Rast, Patrick;
Jogler, Christian;
Kaster, Anne-Kristin

Publication type:

Article

Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.02079

By:

Kohn, Timo;
Heuer, Anja;
Jogler, Mareike;
Vollmers, John;
Boedeker, Christian;
Bunk, Boyke;
Rast, Patrick;
Borchert, Daniela;
Glöckner, Ines;
Freese, Heike M.;
Klenk, Hans-Peter;
Overmann, Jörg;
Kaster, Anne-Kristin;
Rohde, Manfred;
Wiegand, Sandra;
Jogler, Christian

Publication type:

Article

Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00603

By:

Flood, Beverly E.;
Bailey, Jake;
Fliss, Palmer;
Jones, Daniel S.;
Dick, Gregory J.;
Jain, Sunit;
Kaster, Anne-Kristin;
Winke, Matthias;
Mußmann, Marc

Publication type:

Article

Deltaproteobacteria (Pelobacter) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 2, p. 277, doi. 10.1038/s41396-018-0269-8

By:

Jameson, Eleanor;
Stephenson, Jason;
Jones, Helen;
Millard, Andrew;
Kaster, Anne-Kristin;
Purdy, Kevin J.;
Airs, Ruth;
Murrell, J. Colin;
Chen, Yin

Publication type:

Article

Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 9, p. 1831, doi. 10.1038/ismej.2014.24

By:

Kaster, Anne-Kristin;
Mayer-Blackwell, Koshlan;
Pasarelli, Ben;
Spormann, Alfred M

Publication type:

Article

Isolation, Biosynthesis and Chemical Modifications of Rubterolones A-F: Rare Tropolone Alkaloids from Actinomadura sp. 5-2.

Published in:

Chemistry - A European Journal, 2017, v. 23, n. 39, p. 9338, doi. 10.1002/chem.201701005

By:

Guo, Huijuan;
Benndorf, René;
Leichnitz, Daniel;
Klassen, Jonathan L.;
Vollmers, John;
Görls, Helmar;
Steinacker, Matthias;
Weigel, Christiane;
Dahse, Hans‐Martin;
Kaster, Anne‐Kristin;
de Beer, Z. Wilhelm;
Poulsen, Michael;
Beemelmanns, Christine

Publication type:

Article

A three-colour stress biosensor reveals multimodal response in single cells and spatiotemporal dynamics of biofilms.

Published in:

NPJ Biofilms & Microbiomes, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41522-023-00424-1

By:

Zoheir, Ahmed E.;
Sobol, Morgan S.;
Meisch, Laura;
Ordoñez-Rueda, Diana;
Kaster, Anne-Kristin;
Niemeyer, Christof M.;
Rabe, Kersten S.

Publication type:

Article

Detection of the carbapenemase gene blaVIM-5 in members of the Pseudomonas putida group isolated from polluted Nigerian wetlands.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-33535-3

By:

Adelowo, Olawale O.;
Vollmers, John;
Mäusezahl, Ines;
Kaster, Anne-Kristin;
Müller, Jochen A.

Publication type:

Article

Identification of Antibiotic Resistance Gene Hosts in Treatment Wetlands Using a Single-Cell Based High-Throughput Approach.

Published in:

Water (20734441), 2023, v. 15, n. 13, p. 2432, doi. 10.3390/w15132432

By:

Knecht, Camila A.;
Hinkel, Maja;
Mäusezahl, Ines;
Kaster, Anne-Kristin;
Nivala, Jaime;
Müller, Jochen A.

Publication type:

Article

How clear is our current view on microbial dark matter? (Re-)assessing public MAG & SAG datasets with MDMcleaner.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. e76, doi. 10.1093/nar/gkac294

By:

Vollmers, John;
Wiegand, Sandra;
Lenk, Florian;
Kaster, Anne-Kristin

Publication type:

Article

A photobioreactor for production of algae biomass from gaseous emissions of an animal house.

Published in:

Applied Microbiology & Biotechnology, 2023, v. 107, n. 24, p. 7673, doi. 10.1007/s00253-023-12815-7

By:

Glockow, Till;
Velaz Martín, Marta;
Meisch, Laura;
Kapieske, Denis;
Meissner, Kai;
Correa Cassal, Maximiano;
Kaster, Anne-Kristin;
Rabe, Kersten S.;
Niemeyer, Christof M.

Publication type:

Article

Microbial single-cell omics: the crux of the matter.

Published in:

Applied Microbiology & Biotechnology, 2020, v. 104, n. 19, p. 8209, doi. 10.1007/s00253-020-10844-0

By:

Kaster, Anne-Kristin;
Sobol, Morgan S.

Publication type:

Article

Corrigendum: Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes From the German Wadden Sea.

Published in:

2019

By:

Kohn, Timo;
Heuer, Anja;
Jogler, Mareike;
Vollmers, John;
Boedeker, Christian;
Bunk, Boyke;
Rast, Patrick;
Borchert, Daniela;
Glöckner, Ines;
Freese, Heike M.;
Klenk, Hans-Peter;
Overmann, Jörg;
Kaster, Anne-Kristin;
Rohde, Manfred;
Wiegand, Sandra;
Jogler, Christian

Publication type:

Correction Notice

Drug‐Induced Differential Gene Expression Analysis on Nanoliter Droplet Microarrays: Enabling Tool for Functional Precision Oncology.

Published in:

Advanced Healthcare Materials, 2025, v. 14, n. 1, p. 1, doi. 10.1002/adhm.202401820

By:

El Khaled EL Faraj, Razan;
Chakraborty, Shraddha;
Zhou, Meijun;
Sobol, Morgan;
Thiele, David;
Shatford‐Adams, Lilly M;
Correa Cassal, Maximiano;
Kaster, Anne‐Kristin;
Dietrich, Sascha;
Levkin, Pavel A.;
Popova, Anna A.

Publication type:

Article

An Ancient Pathway Combining Carbon Dioxide Fixation with the Generation and Utilization of a Sodium Ion Gradient for ATP Synthesis.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033439

By:

Poehlein, Anja;
Schmidt, Silke;
Kaster, Anne-Kristin;
Goenrich, Meike;
Vollmers, John;
Thürmer, Andrea;
Bertsch, Johannes;
Schuchmann, Kai;
Voigt, Birgit;
Hecker, Michael;
Daniel, Rolf;
Thauer, Rudolf K.;
Gottschalk, Gerhard;
Müller, Volker

Publication type:

Article

Pseudomonas stutzeri KC Carries the pdt Genes for Carbon Tetrachloride Degradation on an Integrative and Conjugative Element.

Published in:

Microbial Physiology, 2024, v. 34, n. 1, p. 121, doi. 10.1159/000538783

By:

Sewell, Holly L.;
Criddle, Craig S.;
Woo, Sung-Geun;
Kim, Sooyeol;
Müller, Jochen A.;
Kaster, Anne-Kristin

Publication type:

Article

Targeted Cell Labeling and Sorting of Prokaryotes for Cultivation and Omics Approaches.

Published in:

Microbial Physiology, 2023, v. 33, n. 1, p. 63, doi. 10.1159/000532088

By:

Sturm, Gunnar;
Mojarrad, Mohammad;
Kaster, Anne-Kristin

Publication type:

Article

Exploring the Antibacterial Effects of Ozonated Oils in Medicine: A Study on Escherichia coli Inhibition.

Published in:

Ozone: Science & Engineering, 2024, v. 46, n. 2, p. 174, doi. 10.1080/01919512.2023.2233746

By:

Petani, Lisa;
Jung, Anna-Maria;
Frietsch Musulin, Rosa-Rafaela;
Sturm, Gunnar;
Kaster, Anne-Kristin;
Pylatiuk, Christian

Publication type:

Article

Taxonomic Re-Classification and Expansion of the Phylum Chloroflexota Based on over 5000 Genomes and Metagenome-Assembled Genomes.

Published in:

Microorganisms, 2023, v. 11, n. 10, p. 2612, doi. 10.3390/microorganisms11102612

By:

Wiegand, Sandra;
Sobol, Morgan;
Schnepp-Pesch, Luca Kristina;
Yan, Geng;
Iqbal, Sajid;
Vollmers, John;
Müller, Jochen A.;
Kaster, Anne-Kristin

Publication type:

Article

Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.

Published in:

Microorganisms, 2021, v. 9, n. 7, p. 1494, doi. 10.3390/microorganisms9071494

By:

Wiegand, Sandra;
Rast, Patrick;
Kallscheuer, Nicolai;
Jogler, Mareike;
Heuer, Anja;
Boedeker, Christian;
Jeske, Olga;
Kohn, Timo;
Vollmers, John;
Kaster, Anne-Kristin;
Quast, Christian;
Glöckner, Frank Oliver;
Rohde, Manfred;
Jogler, Christian

Publication type:

Article

More Than 200 Genes Required for Methane Formation from H2 and CO2 and Energy Conservation Are Present in Methanothermobacter marburgensis and Methanothermobacter thermautotrophicus.

Published in:

Archaea, 2011, p. 1, doi. 10.1155/2011/973848

By:

Kaster, Anne-Kristin;
Goenrich, Meike;
Seedorf, Henning;
Liesegang, Heiko;
Wollherr, Antje;
Gottschalk, Gerhard;
Thauer, Rudolf K.

Publication type:

Article

Works by Kaster, Anne‐Kristin

Methanogenic archaea: ecologically relevant differences in energy conservation.

Targeted Cell Sorting Combined With Single Cell Genomics Captures Low Abundant Microbial Dark Matter With Higher Sensitivity Than Metagenomics.

Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere

Updates to the recently introduced family Lacipirellulaceae in the phylum Planctomycetes: isolation of strains belonging to the novel genera Aeoliella, Botrimarina, Pirellulimonas and Pseudobythopirellula and the novel species Bythopirellula polymerisocia and Posidoniimonas corsicana

Sustainable agriculture: leveraging microorganisms for a circular economy.

Printing Microbial Dark Matter: Using Single Cell Dispensing and Genomics to Investigate the Patescibacteria/Candidate Phyla Radiation.

IncP‐type plasmids carrying genes for antibiotic resistance or for aromatic compound degradation are prevalent in sequenced Aromatoleum and Thauera strains.

Genome‐inferred spatio‐temporal resolution of an uncultivated Roizmanbacterium reveals its ecological preferences in groundwater.

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy.

Unravelling the Identity, Metabolic Potential and Global Biogeography of the Atmospheric Methane‐Oxidizing Upland Soil Cluster α.

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!

Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea.

Back to Basics: A Simplified Improvement to Multiple Displacement Amplification for Microbial Single-Cell Genomics.

First shotgun metagenomics study of Juan de Fuca deep-sea sediments reveals distinct microbial communities above, within, between, and below sulfate methane transition zones.

Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning.

Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea.

Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity.

Deltaproteobacteria (Pelobacter) and Methanococcoides are responsible for choline-dependent methanogenesis in a coastal saltmarsh sediment.

Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin.

Isolation, Biosynthesis and Chemical Modifications of Rubterolones A-F: Rare Tropolone Alkaloids from Actinomadura sp. 5-2.

A three-colour stress biosensor reveals multimodal response in single cells and spatiotemporal dynamics of biofilms.

Detection of the carbapenemase gene bla<sub>VIM-5</sub> in members of the Pseudomonas putida group isolated from polluted Nigerian wetlands.

Identification of Antibiotic Resistance Gene Hosts in Treatment Wetlands Using a Single-Cell Based High-Throughput Approach.

How clear is our current view on microbial dark matter? (Re-)assessing public MAG & SAG datasets with MDMcleaner.

A photobioreactor for production of algae biomass from gaseous emissions of an animal house.

Microbial single-cell omics: the crux of the matter.

Corrigendum: Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes From the German Wadden Sea.

Drug‐Induced Differential Gene Expression Analysis on Nanoliter Droplet Microarrays: Enabling Tool for Functional Precision Oncology.

An Ancient Pathway Combining Carbon Dioxide Fixation with the Generation and Utilization of a Sodium Ion Gradient for ATP Synthesis.

Pseudomonas stutzeri KC Carries the pdt Genes for Carbon Tetrachloride Degradation on an Integrative and Conjugative Element.

Targeted Cell Labeling and Sorting of Prokaryotes for Cultivation and Omics Approaches.

Exploring the Antibacterial Effects of Ozonated Oils in Medicine: A Study on Escherichia coli Inhibition.

Taxonomic Re-Classification and Expansion of the Phylum Chloroflexota Based on over 5000 Genomes and Metagenome-Assembled Genomes.

Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.

More Than 200 Genes Required for Methane Formation from H<sub>2</sub> and CO<sub>2</sub> and Energy Conservation Are Present in Methanothermobacter marburgensis and Methanothermobacter thermautotrophicus.