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Molecular Insights into the Role of Cysteine-Rich Peptides in Induced Resistance to Fusarium oxysporum Infection in Tomato Based on Transcriptome Profiling.
Published in:
International Journal of Molecular Sciences, 2021, v. 22, n. 11, p. 5741, doi. 10.3390/ijms22115741
By:
- Slezina, Marina P.;
- Istomina, Ekaterina A.;
- Korostyleva, Tatyana V.;
- Kovtun, Alexey S.;
- Kasianov, Artem S.;
- Konopkin, Alexey A.;
- Shcherbakova, Larisa A.;
- Odintsova, Tatyana I.
Publication type:
Article
Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response—What is First?
Published in:
International Journal of Molecular Sciences, 2020, v. 21, n. 8, p. 2716, doi. 10.3390/ijms21082716
By:
- Orekhov, Alexander N.;
- Sukhorukov, Vasily N.;
- Nikiforov, Nikita G.;
- Kubekina, Marina V.;
- Sobenin, Igor A.;
- Foxx, Kathy K.;
- Pintus, Sergey;
- Stegmaier, Philip;
- Stelmashenko, Daria;
- Kel, Alexander;
- Poznyak, Anastasia V.;
- Wu, Wei-Kai;
- Kasianov, Artem S.;
- Makeev, Vsevolod Y.;
- Manabe, Ichiro;
- Oishi, Yumiko
Publication type:
Article
Correction to: Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches.
Published in:
2020
By:
- Babenko, Vladislav V.;
- Podgorny, Oleg V.;
- Manuvera, Valentin A.;
- Kasianov, Artem S.;
- Manolov, Alexander I.;
- Grafskaia, Ekaterina N.;
- Shirokov, Dmitriy A.;
- Kurdyumov, Alexey S.;
- Vinogradov, Dmitriy V.;
- Nikitina, Anastasia S.;
- Kovalchuk, Sergey I.;
- Anikanov, Nickolay A.;
- Butenko, Ivan O.;
- Pobeguts, Olga V.;
- Matyushkina, Daria S.;
- Rakitina, Daria V.;
- Kostryukova, Elena S.;
- Zgoda, Victor G.;
- Baskova, Isolda P.;
- Trukhan, Vladimir M.
Publication type:
Correction Notice
Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches.
Published in:
BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6748-0
By:
- Babenko, Vladislav V.;
- Podgorny, Oleg V.;
- Manuvera, Valentin A.;
- Kasianov, Artem S.;
- Manolov, Alexander I.;
- Grafskaia, Ekaterina N.;
- Shirokov, Dmitriy A.;
- Kurdyumov, Alexey S.;
- Vinogradov, Dmitriy V.;
- Nikitina, Anastasia S.;
- Kovalchuk, Sergey I.;
- Anikanov, Nickolay A.;
- Butenko, Ivan O.;
- Pobeguts, Olga V.;
- Matyushkina, Daria S.;
- Rakitina, Daria V.;
- Kostryukova, Elena S.;
- Zgoda, Victor G.;
- Baskova, Isolda P.;
- Trukhan, Vladimir M.
Publication type:
Article
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 1, p. D116, doi. 10.1093/nar/gkv1249
By:
- Kulakovskiy, Ivan V.;
- Vorontsov, Ilya E.;
- Yevshin, Ivan S.;
- Soboleva, Anastasiia V.;
- Kasianov, Artem S.;
- Ashoor, Haitham;
- Ba-alawi, Wail;
- Bajic, Vladimir B.;
- Medvedeva, Yulia A.;
- Kolpakov, Fedor A.;
- Makeev, Vsevolod J.
Publication type:
Article
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.
Published in:
Nucleic Acids Research, 2013, v. 41, p. D195, doi. 10.1093/nar/gks1089
By:
- Kulakovskiy, Ivan V.;
- Medvedeva, Yulia A.;
- Schaefer, Ulf;
- Kasianov, Artem S.;
- Vorontsov, Ilya E.;
- Bajic, Vladimir B.;
- Makeev, Vsevolod J.
Publication type:
Article
Trans2express – de novo transcriptome assembly pipeline optimized for gene expression analysis.
Published in:
Plant Methods, 2024, v. 20, p. 1, doi. 10.1186/s13007-024-01255-7
By:
- Kasianova, Aleksandra M.;
- Penin, Aleksey A.;
- Schelkunov, Mikhail I.;
- Kasianov, Artem S.;
- Logacheva, Maria D.;
- Klepikova, Anna V.
Publication type:
Article
An update to database TraVA: organ-specific cold stress response in Arabidopsis thaliana.
Published in:
BMC Plant Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12870-019-1636-y
By:
- Klepikova, Anna V.;
- Kulakovskiy, Ivan V.;
- Kasianov, Artem S.;
- Logacheva, Maria D.;
- Penin, Aleksey A.
Publication type:
Article
De novo assembling and primary analysis of genome and transcriptome of gray whale Eschrichtius robustus.
Published in:
BMC Evolutionary Biology, 2017, v. 17, p. 5, doi. 10.1186/s12862-017-1103-z
By:
- Moskalev, Alexey A.;
- Kudryavtseva, Anna V.;
- Graphodatsky, Alexander S.;
- Beklemisheva, Violetta R.;
- Serdyukova, Natalya A.;
- Krutovsky, Konstantin V.;
- Sharov, Vadim V.;
- Kulakovskiy, Ivan V.;
- Lando, Andrey S.;
- Kasianov, Artem S.;
- Kuzmin, Dmitry A.;
- Putintseva, Yuliya A.;
- Feranchuk, Sergey I.;
- Shaposhnikov, Mikhail V.;
- Fraifeld, Vadim E.;
- Toren, Dmitri;
- Snezhkina, Anastasia V.;
- Sitnik, Vasily V.
Publication type:
Article
High-quality genome assembly of Capsella bursa-pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution.
Published in:
Plant Journal, 2017, v. 91, n. 2, p. 278, doi. 10.1111/tpj.13563
By:
- Kasianov, Artem S.;
- Klepikova, Anna V.;
- Kulakovskiy, Ivan V.;
- Gerasimov, Evgeny S.;
- Fedotova, Anna V.;
- Besedina, Elizaveta G.;
- Kondrashov, Alexey S.;
- Logacheva, Maria D.;
- Penin, Aleksey A.
Publication type:
Article
A high resolution map of the Arabidopsis thaliana developmental transcriptome based on RNA-seq profiling.
Published in:
Plant Journal, 2016, v. 88, n. 6, p. 1058, doi. 10.1111/tpj.13312
By:
- Klepikova, Anna V.;
- Kasianov, Artem S.;
- Gerasimov, Evgeny S.;
- Logacheva, Maria D.;
- Penin, Aleksey A.
Publication type:
Article
High-Resolution Transcriptome Atlas and Improved Genome Assembly of Common Buckwheat, Fagopyrum esculentum.
Published in:
Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2021.612382
By:
- Penin, Aleksey A.;
- Kasianov, Artem S.;
- Klepikova, Anna V.;
- Kirov, Ilya V.;
- Gerasimov, Evgeny S.;
- Fesenko, Aleksey N.;
- Logacheva, Maria D.
Publication type:
Article
lepidium-like , a Naturally Occurring Mutant of Capsella bursa-pastoris , and Its Implications on the Evolution of Petal Loss in Cruciferae.
Published in:
Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.714711
By:
- Klepikova, Anna V.;
- Shnayder, Elina D.;
- Kasianov, Artem S.;
- Remizowa, Margarita V.;
- Sokoloff, Dmitry D.;
- Penin, Aleksey A.
Publication type:
Article
Non-Specific Lipid Transfer Proteins in Triticum kiharae Dorof. et Migush.: Identification, Characterization and Expression Profiling in Response to Pathogens and Resistance Inducers.
Published in:
Pathogens, 2019, v. 8, n. 4, p. 221, doi. 10.3390/pathogens8040221
By:
- Odintsova, Tatyana I.;
- Slezina, Marina P.;
- Istomina, Ekaterina A.;
- Korostyleva, Tatyana V.;
- Kovtun, Alexey S.;
- Kasianov, Artem S.;
- Shcherbakova, Larisa A.;
- Kudryavtsev, Alexander M.
Publication type:
Article
Gene Networks Underlying the Resistance of Bifidobacterium longum to Inflammatory Factors.
Published in:
Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.595877
By:
- Veselovsky, Vladimir A.;
- Dyachkova, Marina S.;
- Menyaylo, Egor A.;
- Polyaeva, Polina S.;
- Olekhnovich, Evgenii I.;
- Shitikov, Egor A.;
- Bespiatykh, Dmitry A.;
- Semashko, Tatiana A.;
- Kasianov, Artem S.;
- Ilina, Elena N.;
- Danilenko, Valeriy N.;
- Klimina, Ksenia M.
Publication type:
Article
Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota.
Published in:
Toxins, 2020, v. 12, n. 6, p. 388, doi. 10.3390/toxins12060388
By:
- Klimina, Ksenia M.;
- Voroshilova, Viktoriya N.;
- Poluektova, Elena U.;
- Veselovsky, Vladimir A.;
- Yunes, Roman A.;
- Kovtun, Aleksey S.;
- Kudryavtseva, Anna V.;
- Kasianov, Artem S.;
- Danilenko, Valery N.
Publication type:
Article
The effects of desynchronosis on the gut microbiota composition and physiological parameters of rats.
Published in:
BMC Microbiology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12866-019-1535-2
By:
- Klimina, Ksenia M.;
- Batotsyrenova, Ekaterina G.;
- Yunes, Roman A.;
- Gilyaeva, Elena H.;
- Poluektova, Elena U.;
- Kostrova, Taisia A.;
- Kudryavtseva, Anna V.;
- Odorskaya, Maya V.;
- Kashuro, Vadim A.;
- Kasianov, Artem S.;
- Ivanov, Maksim B.;
- Danilenko, Valery N.
Publication type:
Article
Expression of SARS-CoV-2 entry factors in lung epithelial stem cells and its potential implications for COVID-19.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-74598-5
By:
- Valyaeva, Anna A.;
- Zharikova, Anastasia A.;
- Kasianov, Artem S.;
- Vassetzky, Yegor S.;
- Sheval, Eugene V.
Publication type:
Article
Assessment of ITS1, ITS2, 5′-ETS, and trnL-F DNA Barcodes for Metabarcoding of Poaceae Pollen.
Published in:
Diversity (14242818), 2022, v. 14, n. 3, p. 191, doi. 10.3390/d14030191
By:
- Omelchenko, Denis O.;
- Krinitsina, Anastasia A.;
- Kasianov, Artem S.;
- Speranskaya, Anna S.;
- Chesnokova, Olga V.;
- Polevova, Svetlana V.;
- Severova, Elena E.
Publication type:
Article
Interspecific comparison of gene expression profiles using machine learning.
Published in:
PLoS Computational Biology, 2023, v. 19, n. 1, p. 1, doi. 10.1371/journal.pcbi.1010743
By:
- Kasianov, Artem S.;
- Klepikova, Anna V.;
- Mayorov, Alexey V.;
- Buzanov, Gleb S.;
- Logacheva, Maria D.;
- Penin, Aleksey A.
Publication type:
Article
Transcriptome atlas of Phalaenopsis equestris.
Published in:
PeerJ, 2021, p. 1, doi. 10.7717/peerj.12600
By:
- Klepikova, Anna V.;
- Kasianov, Artem S.;
- Ezhova, Margarita A.;
- Penin, Aleksey A.;
- Logacheva, Maria D.
Publication type:
Article
Employing toxin-antitoxin genome markers for identification of Bifidobacterium and Lactobacillus strains in human metagenomes.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.6554
By:
- Klimina, Ksenia M.;
- Kasianov, Artem S.;
- Poluektova, Elena U.;
- Emelyanov, Kirill V.;
- Voroshilova, Viktoriya N.;
- Zakharevich, Natalia V.;
- Kudryavtseva, Anna V.;
- Makeev, Vsevolod J.;
- Danilenko, Valery N.
Publication type:
Article
Defensin-like peptides in wheat analyzed by whole-transcriptome sequencing: a focus on structural diversity and role in induced resistance.
Published in:
PeerJ, 2019, p. 1, doi. 10.7717/peerj.6125
By:
- Odintsova, Tatyana I.;
- Slezina, Marina P.;
- Istomina, Ekaterina A.;
- Korostyleva, Tatyana V.;
- Kasianov, Artem S.;
- Kovtun, Alexey S.;
- Makeev, Vsevolod J.;
- Shcherbakova, Larisa A.;
- Kudryavtsev, Alexander M.
Publication type:
Article
Origin and diversity of Capsella bursa-pastoris from the genomic point of view.
Published in:
BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-01832-1
By:
- Penin, Aleksey A.;
- Kasianov, Artem S.;
- Klepikova, Anna V.;
- Omelchenko, Denis O.;
- Makarenko, Maksim S.;
- Logacheva, Maria D.
Publication type:
Article
Aerobiological Monitoring and Metabarcoding of Grass Pollen.
Published in:
Plants (2223-7747), 2023, v. 12, n. 12, p. 2351, doi. 10.3390/plants12122351
By:
- Krinitsina, Anastasia A.;
- Omelchenko, Denis O.;
- Kasianov, Artem S.;
- Karaseva, Vera S.;
- Selezneva, Yulia M.;
- Chesnokova, Olga V.;
- Shirobokov, Vitaly A.;
- Polevova, Svetlana V.;
- Severova, Elena E.
Publication type:
Article
Mitochondrial Genome of Fagopyrum esculentum and the Genetic Diversity of Extranuclear Genomes in Buckwheat.
Published in:
Plants (2223-7747), 2020, v. 9, n. 5, p. 618, doi. 10.3390/plants9050618
By:
- Logacheva, Maria D.;
- Schelkunov, Mikhail I.;
- Fesenko, Aleksey N.;
- Kasianov, Artem S.;
- Penin, Aleksey A.
Publication type:
Article
Assembly and Analysis of the Complete Mitochondrial Genome of Capsella bursa-pastoris.
Published in:
Plants (2223-7747), 2020, v. 9, n. 4, p. 469, doi. 10.3390/plants9040469
By:
- Omelchenko, Denis O.;
- Makarenko, Maxim S.;
- Kasianov, Artem S.;
- Schelkunov, Mikhail I.;
- Logacheva, Maria D.;
- Penin, Aleksey A.
Publication type:
Article
Comparative Analysis of Developmental Transcriptome Maps of Arabidopsis thaliana and Solanum lycopersicum.
Published in:
Genes, 2019, v. 10, n. 1, p. 50, doi. 10.3390/genes10010050
By:
- Penin, Aleksey A.;
- Klepikova, Anna V.;
- Kasianov, Artem S.;
- Gerasimov, Evgeny S.;
- Logacheva, Maria D.
Publication type:
Article
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).
Published in:
BMC Genomics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2164-12-30
By:
- Logacheva, Maria D.;
- Kasianov, Artem S.;
- Vinogradov, Dmitriy V.;
- Samigullin, Tagir H.;
- Gelfand, Mikhail S.;
- Makeev, Vsevolod J.;
- Penin, Aleksey A.
Publication type:
Article

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