Works by Karttunen, Mikko

Results: 53

Citrate Modulates Calcium Oxalate Crystal Growth by Face-Specific Interactions.

Published in:

Cells Tissues Organs, 2011, v. 194, n. 2-4, p. 176, doi. 10.1159/000324338

By:

Grohe, Bernd;
O'Young, Jason;
Langdon, Aaron;
Karttunen, Mikko;
Goldberg, Harvey A.;
Hunter, Graeme K.

Publication type:

Article

Phosphorylation of Osteopontin Peptides Mediates Adsorption to and Incorporation into Calcium Oxalate Crystals.

Published in:

Cells Tissues Organs, 2008, v. 189, n. 1-4, p. 51, doi. 10.1159/000151724

By:

O'Young, Jason;
Chirico, Sara;
Al Tarhuni, Nehal;
Grohe, Bernd;
Karttunen, Mikko;
Goldberg, Harvey A.;
Hunter, Graeme K.

Publication type:

Article

Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep02991

By:

Titantah, John Tatini;
Karttunen, Mikko

Publication type:

Article

Water dynamics: Relation between hydrogen bond bifurcations, molecular jumps, local density & hydrophobicity.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep02991

By:

Titantah, John Tatini;
Karttunen, Mikko

Publication type:

Article

α-Helical Structures Drive Early Stages of Self-Assembly of Amyloidogenic Amyloid Polypeptide Aggregate Formation in Membranes.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep02781

By:

Pannuzzo, Martina;
Raudino, Antonio;
Milardi, Danilo;
Rosa, Carmelo La;
Karttunen, Mikko

Publication type:

Article

Binding of disordered proteins to a protein hub.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep02305

By:

Cino, Elio A.;
Killoran, Ryan C.;
Karttunen, Mikko;
Wing-Yiu Choy

Publication type:

Article

SymPhas—General Purpose Software for Phase‐Field, Phase‐Field Crystal, and Reaction‐Diffusion Simulations.

Published in:

Advanced Theory & Simulations, 2022, v. 5, n. 1, p. 1, doi. 10.1002/adts.202100351

By:

Silber, Steven A.;
Karttunen, Mikko

Publication type:

Article

Thermoplasmonic Response of Semiconductor Nanoparticles: A Comparison with Metals.

Published in:

Advanced Theory & Simulations, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1002/adts.201800100

By:

Thakore, Vaibhav;
Tang, Janika;
Conley, Kevin;
Ala‐Nissila, Tapio;
Karttunen, Mikko

Publication type:

Article

Nonpolar interactions between trans-membrane helical EGF peptide and phosphatidylcholines, sphingomyelins and cholesterol. Molecular dynamics simulation studies.

Published in:

Journal of Peptide Science, 2008, v. 14, n. 4, p. 374, doi. 10.1002/psc.936

By:

Róg, Tomasz;
Murzyn, Krzysztof;
Karttunen, Mikko;
Pasenkiewicz-Gierula, Marta

Publication type:

Article

Collective interactions among organometallics are exotic bonds hidden on lab shelves.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29504-0

By:

Sowlati-Hashjin, Shahin;
Šadek, Vojtěch;
Sadjadi, SeyedAbdolreza;
Karttunen, Mikko;
Martín-Pendás, Angel;
Foroutan-Nejad, Cina

Publication type:

Article

Experimental and Computational Observations of Immunogenic Cobalt Porphyrin Lipid Bilayers: Nanodomain-Enhanced Antigen Association.

Published in:

Pharmaceutics, 2021, v. 13, n. 1, p. 98, doi. 10.3390/pharmaceutics13010098

By:

Federizon, Jasmin;
Feugmo, Conrard Giresse Tetsassi;
Huang, Wei-Chiao;
He, Xuedan;
Miura, Kazutoyo;
Razi, Aida;
Ortega, Joaquin;
Karttunen, Mikko;
Lovell, Jonathan F.

Publication type:

Article

Effects of Compression and Filler Particle Coating on the Electrical Conductivity of Thermoplastic Elastomer Composites.

Published in:

Journal of Electronic Materials, 2013, v. 42, n. 10, p. 2983, doi. 10.1007/s11664-013-2689-6

By:

Albers, Willem;
Karttunen, Mikko;
Wikström, Lisa;
Vilkman, Taisto

Publication type:

Article

Electrically Conductive Metal Polymer Nanocomposites for Electronics Applications.

Published in:

Journal of Electronic Materials, 2008, v. 37, n. 7, p. 951, doi. 10.1007/s11664-008-0451-2

By:

Karttunen, Mikko;
Ruuskanen, Pekka;
Pitkänen, Ville;
Albers, Willem M.

Publication type:

Article

Temperature-resilient anapole modes associated with TE polarization in semiconductor nanowires.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-25289-w

By:

Thakore, Vaibhav;
Ala-Nissila, Tapio;
Karttunen, Mikko

Publication type:

Article

Design and Characterization of a Multifunctional pH-Triggered Peptide C8 for Selective Anticancer Activity.

Published in:

Advanced Healthcare Materials, 2015, v. 4, n. 17, p. 2709, doi. 10.1002/adhm.201500636

By:

Lu, Sheng;
Bennett, W. F. Drew;
Ding, Yong;
Zhang, Lei;
Fan, Helen Y.;
Zhao, Danyang;
Zheng, Tao;
Ouyang, Ping‐Kai;
Li, Jason;
Wu, Yan;
Xu, Wen;
Chu, Dafeng;
Yuan, Yongfang;
Heerklotz, Heiko;
Karttunen, Mikko;
Chen, P.

Publication type:

Article

Design of Hydrated Porphyrin-Phospholipid Bilayers with Enhanced Magnetic Resonance Contrast.

Published in:

Small, 2017, v. 13, n. 1, p. n/a, doi. 10.1002/smll.201602505

By:

Shao, Shuai;
Do, Trang Nhu;
Razi, Aida;
Chitgupi, Upendra;
Geng, Jumin;
Alsop, Richard J.;
Dzikovski, Boris G.;
Rheinstädter, Maikel C.;
Ortega, Joaquin;
Karttunen, Mikko;
Spernyak, Joseph A.;
Lovell, Jonathan F.

Publication type:

Article

Identification of Catechins' Binding Sites in Monomeric A β 42 through Ensemble Docking and MD Simulations.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 9, p. 8161, doi. 10.3390/ijms24098161

By:

Firouzi, Rohoullah;
Sowlati-Hashjin, Shahin;
Chávez-García, Cecilia;
Ashouri, Mitra;
Karimi-Jafari, Mohammad Hossein;
Karttunen, Mikko

Publication type:

Article

AlphaFold2: A Role for Disordered Protein/Region Prediction?

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 9, p. 4591, doi. 10.3390/ijms23094591

By:

Wilson, Carter J.;
Choy, Wing-Yiu;
Karttunen, Mikko

Publication type:

Article

Computer Simulations of Deep Eutectic Solvents: Challenges, Solutions, and Perspectives.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 2, p. 645, doi. 10.3390/ijms23020645

By:

Tolmachev, Dmitry;
Lukasheva, Natalia;
Ramazanov, Ruslan;
Nazarychev, Victor;
Borzdun, Natalia;
Volgin, Igor;
Andreeva, Maria;
Glova, Artyom;
Melnikova, Sofia;
Dobrovskiy, Alexey;
Silber, Steven A.;
Larin, Sergey;
de Souza, Rafael Maglia;
Ribeiro, Mauro Carlos Costa;
Lyulin, Sergey;
Karttunen, Mikko

Publication type:

Article

KEAP1 Cancer Mutants: A Large-Scale Molecular Dynamics Study of Protein Stability.

Published in:

International Journal of Molecular Sciences, 2021, v. 22, n. 10, p. 5408, doi. 10.3390/ijms22105408

By:

Wilson, Carter J.;
Chang, Megan;
Karttunen, Mikko;
Choy, Wing-Yiu;
Desideri, Alessandro

Publication type:

Article

Coarse-grained modeling of cell division in 3D: influence of density, medium viscosity, and inter-membrane friction on cell growth and nearest neighbor distribution.

Published in:

Soft Materials, 2020, v. 18, n. 2/3, p. 150, doi. 10.1080/1539445X.2019.1706565

By:

Madhikar, Pranav;
Åström, Jan;
Westerholm, Jan;
Baumeier, Björn;
Karttunen, Mikko

Publication type:

Article

The Internet Pilot to Physics: An Open Information System for Physics Research and Education.

Published in:

International Journal of Modern Physics C: Computational Physics & Physical Computation, 1997, v. 8, n. 1, p. 3, doi. 10.1142/S0129183197000035

By:

Karttunen, Mikko;
Holmlund, Kenneth;
Nowotny, Günther

Publication type:

Article

Structure and dielectric breakdown strength of nano calcium carbonate/polypropylene composites.

Published in:

Journal of Applied Polymer Science, 2014, v. 131, n. 1, p. n/a, doi. 10.1002/app.39504

By:

Virtanen, Suvi;
Ranta, Hannes;
Ahonen, Susanna;
Karttunen, Mikko;
Pelto, Jani;
Kannus, Kari;
Pettersson, Mika

Publication type:

Article

Assessing the Nature of Lipid Raft Membranes.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 2, p. 304, doi. 10.1371/journal.pcbi.0030034

By:

Niemelä, Perttu S.;
Ollila, Samuli;
Hyvönen, Marja T.;
Karttunen, Mikko;
Vattulainen, Ilpo

Publication type:

Article

On Coarse-Graining by the Inverse Monte Carlo Method: Dissipative Particle Dynamics Simulations Made to a Precise Tool in Soft Matter Modeling.

Published in:

Soft Materials, 2003, v. 1, n. 1, p. 121, doi. 10.1081/SMTS-120016746

By:

Lyubartsev, AlexanderP.;
Karttunen, Mikko;
Vattulainen, Ilpo;
Laaksonen, Aatto

Publication type:

Article

Combining Finite Element and Machine Learning Methods to Predict Structures of Architectured Interlocking Ceramics.

Published in:

Advanced Engineering Materials, 2023, v. 25, n. 10, p. 1, doi. 10.1002/adem.202201408

By:

Ravanbakhsh, Hossein;
Behbahani, Razyeh;
Yazdani Sarvestani, Hamidreza;
Kiyani, Elham;
Rahmat, Meysam;
Karttunen, Mikko;
Ashrafi, Behnam

Publication type:

Article

Combining Finite Element and Machine Learning Methods to Predict Structures of Architectured Interlocking Ceramics.

Published in:

Advanced Engineering Materials, 2023, v. 25, n. 10, p. 1, doi. 10.1002/adem.202201408

By:

Ravanbakhsh, Hossein;
Behbahani, Razyeh;
Yazdani Sarvestani, Hamidreza;
Kiyani, Elham;
Rahmat, Meysam;
Karttunen, Mikko;
Ashrafi, Behnam

Publication type:

Article

Reply to: On the existence of collective interactions reinforcing the metal-ligand bond in organometallic compounds.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-39504-3

By:

Šadek, Vojtech;
Sowlati-Hashjin, Shahin;
Sadjadi, SeyedAbdolreza;
Karttunen, Mikko;
Martín-Pendás, Angel;
Foroutan-Nejad, Cina

Publication type:

Article

Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: Diffusion, free energy of hydration, and structural properties.

Published in:

Journal of Computational Chemistry, 2004, v. 25, n. 5, p. 678, doi. 10.1002/jcc.10417

By:

Patra, Michael;
Karttunen, Mikko

Publication type:

Article

Static charges cannot drive a continuous flow of water molecules through a carbon nanotube.

Published in:

2010

By:

Wong-ekkabut, Jirasak;
Miettinen, Markus S.;
Dias, Cristiano;
Karttunen, Mikko

Publication type:

Letter

Dependence of fullerene aggregation on lipid saturation due to a balance between entropy and enthalpy.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-37659-4

By:

Nalakarn, Pornkamon;
Boonnoy, Phansiri;
Nisoh, Nililla;
Karttunen, Mikko;
Wong-ekkabut, Jirasak

Publication type:

Article

Fullerenes' Interactions with Plasma Membranes: Insight from the MD Simulations.

Published in:

Biomolecules (2218-273X), 2022, v. 12, n. 5, p. 639, doi. 10.3390/biom12050639

By:

Nisoh, Nililla;
Jarerattanachat, Viwan;
Karttunen, Mikko;
Wong-ekkabut, Jirasak

Publication type:

Article

Porphyrin-phospholipid liposomes permeabilized by near-infrared light.

Published in:

Nature Communications, 2014, v. 5, n. 4, p. 3546, doi. 10.1038/ncomms4546

By:

Carter, Kevin A.;
Shao, Shuai;
Hoopes, Matthew I.;
Luo, Dandan;
Ahsan, Bilal;
Grigoryants, Vladimir M.;
Song, Wentao;
Huang, Haoyuan;
Zhang, Guojian;
Pandey, Ravindra K.;
Geng, Jumin;
Pfeifer, Blaine A.;
Scholes, Charles P.;
Ortega, Joaquin;
Karttunen, Mikko;
Lovell, Jonathan F.

Publication type:

Article

Role of Lipids in Spheroidal High Density Lipoproteins.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 10, p. 1, doi. 10.1371/journal.pcbi.1000964

By:

Vuorela, Timo;
Catte, Andrea;
Niemela¨, Perttu S.;
Hall, Anette;
Hyvo¨ nen, Marja T.;
Marrink, Siewert-Jan;
Karttunen, Mikko;
Vattulainen, Iipo

Publication type:

Article

Stencils with isotropic discretization error for differential operators.

Published in:

Numerical Methods for Partial Differential Equations, 2006, v. 22, n. 4, p. 936

By:

Michael Patra;
Mikko Karttunen

Publication type:

Article

Symmetry-breaking transitions in the early steps of protein self-assembly.

Published in:

European Biophysics Journal, 2020, v. 49, n. 2, p. 175, doi. 10.1007/s00249-020-01424-1

By:

La Rosa, Carmelo;
Condorelli, Marcello;
Compagnini, Giuseppe;
Lolicato, Fabio;
Milardi, Danilo;
Do, Trang Nhu;
Karttunen, Mikko;
Pannuzzo, Martina;
Ramamoorthy, Ayyalusamy;
Fraternali, Franca;
Collu, Francesca;
Rezaei, Human;
Strodel, Birgit;
Raudino, Antonio

Publication type:

Article

Dispersion of Hydrophilic Nanoparticles in Natural Rubber with Phospholipids.

Published in:

Polymers (20734360), 2024, v. 16, n. 20, p. 2901, doi. 10.3390/polym16202901

By:

Kitjanon, Jiramate;
Nisoh, Nililla;
Phongphanphanee, Saree;
Chattham, Nattaporn;
Karttunen, Mikko;
Wong-ekkabut, Jirasak

Publication type:

Article

Changes in the Local Conformational States Caused by Simple Na + and K + Ions in Polyelectrolyte Simulations: Comparison of Seven Force Fields with and without NBFIX and ECC Corrections.

Published in:

Polymers (20734360), 2022, v. 14, n. 2, p. 252, doi. 10.3390/polym14020252

By:

Lukasheva, Natalia;
Tolmachev, Dmitry;
Martinez-Seara, Hector;
Karttunen, Mikko

Publication type:

Article

Strengthening Cellulose Nanopaper via Deep Eutectic Solvent and Ultrasound-Induced Surface Disordering of Nanofibers.

Published in:

Polymers (20734360), 2022, v. 14, n. 1, p. 78, doi. 10.3390/polym14010078

By:

Batishcheva, Elizaveta V.;
Sokolova, Darya N.;
Fedotova, Veronika S.;
Sokolova, Maria P.;
Nikolaeva, Alexandra L.;
Vakulyuk, Alexey Y.;
Shakhbazova, Christina Y.;
Ribeiro, Mauro Carlos Costa;
Karttunen, Mikko;
Smirnov, Michael A.

Publication type:

Article

Nanocomposite of Fullerenes and Natural Rubbers: MARTINI Force Field Molecular Dynamics Simulations.

Published in:

Polymers (20734360), 2021, v. 13, n. 22, p. 4044, doi. 10.3390/polym13224044

By:

Kitjanon, Jiramate;
Khuntawee, Wasinee;
Phongphanphanee, Saree;
Sutthibutpong, Thana;
Chattham, Nattaporn;
Karttunen, Mikko;
Wong-ekkabut, Jirasak

Publication type:

Article

Polymerizable Choline- and Imidazolium-Based Ionic Liquids Reinforced with Bacterial Cellulose for 3D-Printing.

Published in:

Polymers (20734360), 2021, v. 13, n. 18, p. 3044, doi. 10.3390/polym13183044

By:

Smirnov, Michael A.;
Fedotova, Veronika S.;
Sokolova, Maria P.;
Nikolaeva, Alexandra L.;
Elokhovsky, Vladimir Yu.;
Karttunen, Mikko

Publication type:

Article

Effects of Amino Acid Side-Chain Length and Chemical Structure on Anionic Polyglutamic and Polyaspartic Acid Cellulose-Based Polyelectrolyte Brushes.

Published in:

Polymers (20734360), 2021, v. 13, n. 11, p. 1789, doi. 10.3390/polym13111789

By:

Tolmachev, Dmitry;
Mamistvalov, George;
Lukasheva, Natalia;
Larin, Sergey;
Karttunen, Mikko

Publication type:

Article

Influence of Calcium Binding on Conformations and Motions of Anionic Polyamino Acids. Effect of Side Chain Length.

Published in:

Polymers (20734360), 2020, v. 12, n. 6, p. 1279, doi. 10.3390/polym12061279

By:

Tolmachev, Dmitry;
Lukasheva, Natalia;
Mamistvalov, George;
Karttunen, Mikko

Publication type:

Article

Effects of Molecular Crowding on the Dynamics of Intrinsically Disordered Proteins.

Published in:

PLoS ONE, 2012, v. 7, n. 11, p. 1, doi. 10.1371/journal.pone.0049876

By:

Cino, Elio A.;
Karttunen, Mikko;
Wing-Yiu Choy

Publication type:

Article

Microsecond Molecular Dynamics Simulations of Intrinsically Disordered Proteins Involved in the Oxidative Stress Response.

Published in:

PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027371

By:

Cino, Elio A.;
Wong-ekkabut, Jirasak;
Karttunen, Mikko;
Wing-Yiu Choy

Publication type:

Article

Cholesterol Induces Specific Spatial and Orientational Order in Cholesterol/Phospholipid Membranes.

Published in:

PLoS ONE, 2010, v. 5, n. 6, p. 1, doi. 10.1371/journal.pone.0011162

By:

Martinez-Seara, Hector;
Róg, Tomasz;
Karttunen, Mikko;
Vattulainen, Ilpo;
Reigada, Ramon

Publication type:

Article

Roles of Electrostatics and Conformation in Protein-Crystal Interactions.

Published in:

PLoS ONE, 2010, v. 5, n. 2, p. 1, doi. 10.1371/journal.pone.0009330

By:

Azzopardi, Paul V.;
O'Young, Jason;
Lajoie, Gilles;
Karttunen, Mikko;
Goldberg, Harvey A.;
Hunter, Graeme K.

Publication type:

Article

PGlu-Modified Nanocrystalline Cellulose Improves Mechanical Properties, Biocompatibility, and Mineralization of Polyester-Based Composites.

Published in:

Materials (1996-1944), 2019, v. 12, n. 20, p. 3435, doi. 10.3390/ma12203435

By:

Stepanova, Mariia;
Averianov, Ilia;
Serdobintsev, Mikhail;
Gofman, Iosif;
Blum, Natalya;
Semenova, Natalya;
Nashchekina, Yuliya;
Vinogradova, Tatiana;
Korzhikov-Vlakh, Viktor;
Karttunen, Mikko;
Korzhikova-Vlakh, Evgenia

Publication type:

Article

Molecular dynamics simulation of water permeation through the alpha-hemolysin channel.

Published in:

Journal of Biological Physics, 2016, v. 42, n. 1, p. 133, doi. 10.1007/s10867-015-9396-x

By:

Wong-ekkabut, Jirasak;
Karttunen, Mikko

Publication type:

Article

Structural Investigation of DHICA Eumelanin Using Density Functional Theory and Classical Molecular Dynamics Simulations.

Published in:

Molecules, 2022, v. 27, n. 23, p. 8417, doi. 10.3390/molecules27238417

By:

Soltani, Sepideh;
Sowlati-Hashjin, Shahin;
Tetsassi Feugmo, Conrard Giresse;
Karttunen, Mikko

Publication type:

Article