Works by Karathanasis, Nestoras

Results: 13

STATegra: Multi-Omics Data Integration – A Conceptual Scheme With a Bioinformatics Pipeline.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.620453

By:

Planell, Nuria;
Lagani, Vincenzo;
Sebastian-Leon, Patricia;
van der Kloet, Frans;
Ewing, Ewoud;
Karathanasis, Nestoras;
Urdangarin, Arantxa;
Arozarena, Imanol;
Jagodic, Maja;
Tsamardinos, Ioannis;
Tarazona, Sonia;
Conesa, Ana;
Tegner, Jesper;
Gomez-Cabrero, David

Publication type:

Article

Machine Learning Approaches Identify Genes Containing Spatial Information From Single-Cell Transcriptomics Data.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.612840

By:

Loher, Phillipe;
Karathanasis, Nestoras

Publication type:

Article

IsoMiRmap: fast, deterministic and exhaustive mining of isomiRs from short RNA-seq datasets.

Published in:

Bioinformatics, 2021, v. 37, n. 13, p. 1828, doi. 10.1093/bioinformatics/btab016

By:

Loher, Phillipe;
Karathanasis, Nestoras;
Londin, Eric;
Bray, Paul F.;
Pliatsika, Venetia;
Telonis, Aristeidis G.;
Rigoutsos, Isidore

Publication type:

Article

FAIR+E pathogen data for surveillance and research: lessons from COVID-19.

Published in:

Frontiers in Public Health, 2023, p. 1, doi. 10.3389/fpubh.2023.1289945

By:

Neves, Aitana;
Cuesta, Isabel;
Hjerde, Erik;
Klemetsen, Terje;
Salgado, David;
van Helden, Jacques;
Rahman, Nadim;
Fatima, Nazeefa;
Karathanasis, Nestoras;
Zmora, Pawel;
Åkerstr¨om, Wolmar Nyberg;
Grellscheid, Sushma Nagaraja;
Waheed, Zahra;
Blomberg, Niklas

Publication type:

Article

Finding Cancer-Associated miRNAs: Methods and Tools.

Published in:

Molecular Biotechnology, 2011, v. 49, n. 1, p. 97, doi. 10.1007/s12033-011-9416-4

By:

Oulas, Anastasis;
Karathanasis, Nestoras;
Louloupi, Annita;
Poirazi, Panayiota

Publication type:

Article

omicsNPC: Applying the Non-Parametric Combination Methodology to the Integrative Analysis of Heterogeneous Omics Data.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0165545

By:

Karathanasis, Nestoras;
Tsamardinos, Ioannis;
Lagani, Vincenzo

Publication type:

Article

Reproducibility efforts as a teaching tool: A pilot study.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 11, p. 1, doi. 10.1371/journal.pcbi.1010615

By:

Karathanasis, Nestoras;
Hwang, Daniel;
Heng, Vibol;
Abhimannyu, Rimal;
Slogoff-Sevilla, Phillip;
Buchel, Gina;
Frisbie, Victoria;
Li, Peiyao;
Kryoneriti, Dafni;
Rigoutsos, Isidore

Publication type:

Article

Don't use a cannon to kill the … miRNA mosquito.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1047, doi. 10.1093/bioinformatics/btu100

By:

Karathanasis, Nestoras;
Tsamardinos, Ioannis;
Poirazi, Panayiota

Publication type:

Article

Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-48493-7

By:

Fernandes, Sunjay Jude;
Morikawa, Hiromasa;
Ewing, Ewoud;
Ruhrmann, Sabrina;
Joshi, Rubin Narayan;
Lagani, Vincenzo;
Karathanasis, Nestoras;
Khademi, Mohsen;
Planell, Nuria;
Schmidt, Angelika;
Tsamardinos, Ioannis;
Olsson, Tomas;
Piehl, Fredrik;
Kockum, Ingrid;
Jagodic, Maja;
Tegnér, Jesper;
Gomez-Cabrero, David

Publication type:

Article

Predicting the Progression from Asymptomatic to Symptomatic Multiple Myeloma and Stage Classification Using Gene Expression Data.

Published in:

Cancers, 2025, v. 17, n. 2, p. 332, doi. 10.3390/cancers17020332

By:

Karathanasis, Nestoras;
Spyrou, George M.

Publication type:

Article

MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126151

By:

Karathanasis, Nestoras;
Tsamardinos, Ioannis;
Poirazi, Panayiota

Publication type:

Article

A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2.

Published in:

RNA Biology, 2012, v. 9, n. 9, p. 1, doi. 10.4161/rna.21725

By:

Oulas, Anastasis;
Karathanasis, Nestoras;
Louloupi, Annita;
Iliopoulos, Ioannis;
Kalantidis, Kriton;
Poirazi, Panayiota

Publication type:

Article

Ranking of cell clusters in a single-cell RNA-sequencing analysis framework using prior knowledge.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 4, p. 1, doi. 10.1371/journal.pcbi.1011550

By:

Oulas, Anastasis;
Savva, Kyriaki;
Karathanasis, Nestoras;
Spyrou, George M.

Publication type:

Article