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The HADDOCK2.4 web server for integrative modeling of biomolecular complexes.
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- Nature Protocols, 2024, v. 19, n. 11, p. 3219, doi. 10.1038/s41596-024-01011-0
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Structural snapshots of Xer recombination reveal activation by synaptic complex remodeling and DNA bending.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.19706
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Cataloging and organizing p73 interactions in cell cycle arrest and apoptosis.
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- Nucleic Acids Research, 2008, v. 36, n. 15, p. 5033, doi. 10.1093/nar/gkn481
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- Article
Understanding the Role of the Josephin Domain in the PolyUb Binding and Cleavage Properties of Ataxin-3.
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- PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012430
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Blind prediction of interfacial water positions in CAPRI.
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- Proteins, 2014, v. 82, n. 4, p. 620, doi. 10.1002/prot.24439
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Clustering biomolecular complexes by residue contacts similarity.
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- Proteins, 2012, v. 80, n. 7, p. 1810, doi. 10.1002/prot.24078
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Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions.
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- Proteins, 2010, v. 78, n. 15, p. 3242, doi. 10.1002/prot.22814
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- Article
An alternatively spliced PD-L1 isoform PD-L1∆3, and PD-L2 expression in breast cancers: implications for eligibility scoring and immunotherapy response.
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- Cancer Immunology, Immunotherapy, 2023, v. 72, n. 12, p. 4065, doi. 10.1007/s00262-023-03543-y
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- Article
VARS1 mutations associated with neurodevelopmental disorder are located on a short amino acid stretch of the anticodon-binding domain.
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- Turkish Journal of Biology, 2022, v. 46, n. 6, p. 458, doi. 10.55730/1300-0152.2631
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- Article
Enzymatic Generation of Double‐Modified AdoMet Analogues and Their Application in Cascade Reactions with Different Methyltransferases.
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- ChemBioChem, 2022, v. 23, n. 24, p. 1, doi. 10.1002/cbic.202200511
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Modeling the Dynamics of Protein–Protein Interfaces, How and Why?
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- Molecules, 2022, v. 27, n. 6, p. 1841, doi. 10.3390/molecules27061841
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- Article
INTEGRATIVE MODELING OF BIOMOLECULAR COMPLEXES.
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- Turkish Journal of Biochemistry / Turk Biyokimya Dergisi, 2019, v. 44, p. 13
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A Mechanistic View of the Role of E3 in Sumoylation.
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- PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000913
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In Silico Phylogenetic and Structural Analyses of Plant Endogenous Danger Signaling Molecules upon Stress.
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- Oxidative Medicine & Cellular Longevity, 2019, p. 1, doi. 10.1155/2019/8683054
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- Article
Next challenges in protein-protein docking: from proteome to interactome and beyond.
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- WIREs: Computational Molecular Science, 2012, v. 2, n. 4, p. 642, doi. 10.1002/wcms.91
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- Article
Differential Occupancy and Regulatory Interactions of KDM6A in Bladder Cell Lines.
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- Cells (2073-4409), 2023, v. 12, n. 6, p. 836, doi. 10.3390/cells12060836
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Defining distance restraints in HADDOCK.
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- Nature Protocols, 2018, v. 13, n. 7, p. 1503, doi. 10.1038/s41596-018-0017-6
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- Article
Benchmarking the accuracy of structure‐based binding affinity predictors on Spike–ACE2 deep mutational interaction set.
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- Proteins, 2024, v. 92, n. 4, p. 529, doi. 10.1002/prot.26645
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Cover Image, Volume 91, Issue 12.
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- Proteins, 2023, v. 91, n. 12, p. C1, doi. 10.1002/prot.26639
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The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15.
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- Proteins, 2023, v. 91, n. 12, p. 1636, doi. 10.1002/prot.26598
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Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15.
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- Proteins, 2023, v. 91, n. 12, p. 1903, doi. 10.1002/prot.26584
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A C‐term truncated EIF2Bγ protein encoded by an intronically polyadenylated isoform introduces unfavorable EIF2Bγ–EIF2γ interactions.
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- Proteins, 2022, v. 90, n. 3, p. 889, doi. 10.1002/prot.26284
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Assessment of the CASP14 assembly predictions.
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- Proteins, 2021, v. 89, n. 12, p. 1787, doi. 10.1002/prot.26199
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Dynamic proximity interaction profiling suggests that YPEL2 is involved in cellular stress surveillance.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 2, p. 1, doi. 10.1002/pro.4859
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